Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015234

Physical Location & Seq

Genomic Coordinates Reverse (-)

7130507 .. 7131300

Gene Structure 794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031655

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATTCCAAAGCGCCGGAAGCCGGCTATTCCATACGGATCGTGGGCGCCAGACGTGTCGACGCGGGAGGAGATTTCGGTATCTCCTCCCGTGTCGACGGTCGCAGCTACCGTCCAAAAGCTGGTATCGGAGAATGCGGTTATAGTCGTTGGGAGGCGCGGCTGCTGCATGAGCCACGTGGTGACGCGGTTGTTACTCGGCCACGGCGTGAATCCCGCGGTTTTCGATGTGGACGAGGACGACGAGGCCGCTGTTGTCGTTGAGCTACGTAAGAGGATCACGATCATCGGAGATGAGAGTGTTATTAACAACTGGCCGCAGTTTCCGGTGGTTTTCGTCGGCGGGAAGTTGTTTGGTGGGTTGGAGAGGGTTATGGCGACGCATATTTCCGGCGAGCTAGTACCGGTGTTAAAAGAAGCCGGAGCTCTCTGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009987 GO:0010033 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

146

Amino Acids

15.68

Weight (kDa)

6.29

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	47 - 117	7.9e-11	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28480
fragaria_vesca	FvH4_3g08470
malus_domestica	MD05G1309500.v1.1 MD10G1288100.v1.1
prunus_persica	Prupe.4G053500_v2.0.a1
pyrus_communis	pycom10g24110
rosa_chinensis	RchiOBHm_Chr5g0009361
rosa_laevigata	RLG00000031655
rosa_multiflora	Rmu_sc0002711.1_g000021
rosa_roxburghii	Rroxscaffold_1G00066730 Rroxscaffold_1G00067430
rosa_rugosa	Rorug04G0442000
rosa_samantha	Rh5AG072900 Rh5BG069300 Rh5DG069500
rosa_wichuraiana	Rw5G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AccB7I	CCANNNNNTGG	1 cut(s)	121
AccI	GTMKAC	2 cut(s)	59, 95
AccII	CGCG	4 cut(s)	64, 159, 187, 218
AciI	CCGC	9 cut(s)	64, 137, 159, 187, 216, 218, 249, 317, 342
AclWI	GGATC	2 cut(s)	46, 284
AcoI	YGGCCR	2 cut(s)	199, 314
AcvI	CACGTG	1 cut(s)	178
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	2 cut(s)	181, 208
AfaI	GTAC	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	22, 121
AflIII	ACRYGT	1 cut(s)	54
AgeI	ACCGGT	1 cut(s)	403
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	5 cut(s)	107, 121, 265, 397, 425
AluI	AGCT	5 cut(s)	107, 121, 265, 397, 425
Alw21I	GWGCWC	1 cut(s)	427
AlwI	GGATC	2 cut(s)	46, 284
AoxI	GGCC	3 cut(s)	199, 246, 314
ApeKI	GCWGC	3 cut(s)	104, 162, 165
AsiGI	ACCGGT	1 cut(s)	403
AspLEI	GCGC	3 cut(s)	15, 49, 159
AsuHPI	GGTGA	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	427
BbrPI	CACGTG	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	3 cut(s)	116, 149, 152
BceAI	ACGGC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	398
BfoI	RGCGCY	2 cut(s)	16, 50
BisI	GCNGC	6 cut(s)	105, 160, 163, 166, 249, 317
BlsI	GCNGC	6 cut(s)	106, 161, 164, 167, 250, 318
BmgBI	CACGTC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	48
BsaAI	YACGTR	2 cut(s)	178, 269
BsaBI	GATNNNNATC	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	202, 216
BsaWI	WCCGGW	2 cut(s)	325, 403
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 121
Bse118I	RCCGGY	2 cut(s)	22, 403
Bse1I	ACTGG	1 cut(s)	317
Bse8I	GATNNNNATC	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	202, 216
BseJI	GATNNNNATC	1 cut(s)	281
BseLI	CCNNNNNNNGG	2 cut(s)	22, 121
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	2 cut(s)	75, 83
BseXI	GCAGC	3 cut(s)	116, 149, 152
Bsh1236I	CGCG	4 cut(s)	64, 159, 187, 218
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	201, 248, 316
BshNI	GGYRCC	1 cut(s)	46
BshTI	ACCGGT	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	6 cut(s)	16, 23, 326, 390, 404, 420
BslI	CCNNNNNNNGG	2 cut(s)	22, 121
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	3 cut(s)	201, 248, 316
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	38, 276, 282
BspACI	CCGC	9 cut(s)	64, 137, 159, 187, 216, 218, 249, 317, 342
BspANI	GGCC	3 cut(s)	201, 248, 316
BspFNI	CGCG	4 cut(s)	64, 159, 187, 218
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	46, 284
BspT107I	GGYRCC	1 cut(s)	46
BsrFI	RCCGGY	2 cut(s)	22, 403
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	2 cut(s)	22, 403
BssECI	CCNNGG	2 cut(s)	202, 216
BssMI	GATC	3 cut(s)	38, 276, 282
BssNI	GRCGYC	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	100, 112
BstACI	GRCGYC	1 cut(s)	47
BstBAI	YACGTR	2 cut(s)	178, 269
BstC8I	GCNNGC	2 cut(s)	24, 395
BstDSI	CCRYGG	2 cut(s)	202, 216
BstFNI	CGCG	4 cut(s)	64, 159, 187, 218
BstH2I	RGCGCY	2 cut(s)	16, 50
BstHHI	GCGC	3 cut(s)	15, 49, 159
BstKTI	GATC	3 cut(s)	41, 279, 285
BstMBI	GATC	3 cut(s)	38, 276, 282
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 165, 171
BstSNI	TACGTA	1 cut(s)	269
BstUI	CGCG	4 cut(s)	64, 159, 187, 218
BstV1I	GCAGC	3 cut(s)	116, 149, 152
BsuRI	GGCC	3 cut(s)	201, 248, 316
BtgI	CCRYGG	2 cut(s)	202, 216
BtrI	CACGTC	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	24, 395
CfoI	GCGC	3 cut(s)	15, 49, 159
Cfr10I	RCCGGY	2 cut(s)	22, 403
Cfr42I	CCGCGG	1 cut(s)	219
CseI	GACGC	3 cut(s)	70, 193, 388
Csp6I	GTAC	1 cut(s)	401
CspAI	ACCGGT	1 cut(s)	403
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	1 cut(s)	401
DinI	GGCGCC	1 cut(s)	48
DpnI	GATC	3 cut(s)	40, 278, 284
DpnII	GATC	3 cut(s)	38, 276, 282
DraIII	CACNNNGTG	2 cut(s)	181, 208
EaeI	YGGCCR	2 cut(s)	199, 314
Ecl136II	GAGCTC	1 cut(s)	425
Eco105I	TACGTA	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	425
Eco72I	CACGTG	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	427
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
FaeI	CATG	1 cut(s)	172
FaiI	YATR	5 cut(s)	34, 143, 170, 374, 384
FatI	CATG	1 cut(s)	168
FauI	CCCGC	3 cut(s)	57, 223, 335
FblI	GTMKAC	2 cut(s)	59, 95
Fnu4HI	GCNGC	6 cut(s)	105, 160, 163, 166, 249, 317
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	6 cut(s)	105, 160, 163, 166, 249, 317
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	3 cut(s)	14, 48, 158
GluI	GCNGC	6 cut(s)	105, 160, 163, 166, 249, 317
HaeII	RGCGCY	2 cut(s)	16, 50
HaeIII	GGCC	3 cut(s)	201, 248, 316
HapII	CCGG	6 cut(s)	16, 23, 326, 390, 404, 420
HgaI	GACGC	3 cut(s)	70, 193, 388
HhaI	GCGC	3 cut(s)	15, 49, 159
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	3 cut(s)	13, 47, 157
HinP1I	GCGC	3 cut(s)	13, 47, 157
HincII	GTYRAC	2 cut(s)	60, 96
HindII	GTYRAC	2 cut(s)	60, 96
HinfI	GANTC	2 cut(s)	4, 211
HpaII	CCGG	6 cut(s)	16, 23, 326, 390, 404, 420
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	3 cut(s)	60, 96, 232
Hpy188I	TCNGA	2 cut(s)	130, 290
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	3 cut(s)	60, 96, 232
Hpy99I	CGWCG	5 cut(s)	64, 100, 245, 341, 382
HpyCH4III	ACNGT	2 cut(s)	100, 112
HpyCH4IV	ACGT	3 cut(s)	54, 177, 268
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 165, 171
HpySE526I	ACGT	3 cut(s)	54, 177, 268
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	3 cut(s)	13, 47, 157
KasI	GGCGCC	1 cut(s)	46
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
KspI	CCGCGG	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	38, 276, 282
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	3 cut(s)	116, 149, 152
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	3 cut(s)	54, 177, 268
MaeIII	GTNAC	2 cut(s)	181, 192
MalI	GATC	3 cut(s)	40, 278, 284
MboI	GATC	3 cut(s)	38, 276, 282
MhlI	GDGCHC	1 cut(s)	427
Mly113I	GGCGCC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	7 cut(s)	61, 96, 147, 229, 238, 267, 360
MroNI	GCCGGC	1 cut(s)	22
MseI	TTAA	2 cut(s)	306, 410
MspA1I	CMGCKG	2 cut(s)	218, 251
MspI	CCGG	6 cut(s)	16, 23, 326, 390, 404, 420
Mva1269I	GAATGC	1 cut(s)	139
MvnI	CGCG	4 cut(s)	64, 159, 187, 218
MwoI	GCNNNNNNNGC	3 cut(s)	19, 165, 171
NaeI	GCCGGC	1 cut(s)	24
NarI	GGCGCC	1 cut(s)	47
NdeII	GATC	3 cut(s)	38, 276, 282
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	48
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	4 cut(s)	108, 204, 231, 240
PctI	GAATGC	1 cut(s)	139
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	4, 211
PflMI	CCANNNNNTGG	1 cut(s)	121
PinAI	ACCGGT	1 cut(s)	403
PkrI	GCNGC	6 cut(s)	106, 161, 164, 167, 250, 318
PluTI	GGCGCC	1 cut(s)	50
PmaCI	CACGTG	1 cut(s)	178
PmlI	CACGTG	1 cut(s)	178
Ppu21I	YACGTR	2 cut(s)	178, 269
Psp124BI	GAGCTC	1 cut(s)	427
PspCI	CACGTG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	48
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
SacI	GAGCTC	1 cut(s)	427
SacII	CCGCGG	1 cut(s)	219
SalI	GTCGAC	2 cut(s)	58, 94
SaqAI	TTAA	2 cut(s)	306, 410
SatI	GCNGC	6 cut(s)	105, 160, 163, 166, 249, 317
Sau3AI	GATC	3 cut(s)	38, 276, 282
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	8 cut(s)	57, 109, 123, 180, 267, 271, 399, 427
SfoI	GGCGCC	1 cut(s)	48
Sfr303I	CCGCGG	1 cut(s)	219
SgrBI	CCGCGG	1 cut(s)	219
SnaBI	TACGTA	1 cut(s)	269
SsiI	CCGC	9 cut(s)	64, 137, 159, 187, 216, 218, 249, 317, 342
SspDI	GGCGCC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	398
SstI	GAGCTC	1 cut(s)	427
TaaI	ACNGT	2 cut(s)	100, 112
TaiI	ACGT	3 cut(s)	57, 180, 271
TaqI	TCGA	3 cut(s)	59, 95, 225
TauI	GCSGC	3 cut(s)	162, 251, 319
TfiI	GAWTC	2 cut(s)	4, 211
Tru1I	TTAA	2 cut(s)	306, 410
Tru9I	TTAA	2 cut(s)	306, 410
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	104, 162, 165
Tsp45I	GTSAC	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmiI	GTMKAC	2 cut(s)	59, 95
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.