Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015234

Physical Location & Seq

Genomic Coordinates Forward (+)

44018871 .. 44019293

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1309500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCAATCACAAACTATCCCATATGGAACATGGATTCCGGGCACCCGAGCCGGCCACGCGACGCCGTCCTCACGCGACGCCTCACGTGAGCAACACCTAGCGGCGGCCAGCGTACAAAAAATGGTGTCGGAGAATGCTGTCACGGTTGTCGGACGACGTGGCTGCTGCATGTGCCACGTCGTCAAGCGGCTGCTCCTCGGTCACGGGGTCAACCCTACGGTTTTCGAGGTGGACGAGGAAGACGAGATCGGGGTTGTCGTTGAACTGCGGAGACTGATCGGAGCAGACCAGGAGGATTGGCCGCAGTTTCCGGTGGTGTTTGTTGGCGGGAAGTTGTTTGGTGGTTTGGAGAGGGTTATGGCTACTCATATTACAGGTGAACTTGTGCCTGTGTTAAAACAAGCCGGAGCTTTGTGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009987 GO:0010033 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

141

Amino Acids

15.21

Weight (kDa)

6.19

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	47 - 112	3.4e-12	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28480
fragaria_vesca	FvH4_3g08470
malus_domestica	MD05G1309500.v1.1 MD10G1288100.v1.1
prunus_persica	Prupe.4G053500_v2.0.a1
pyrus_communis	pycom10g24110
rosa_chinensis	RchiOBHm_Chr5g0009361
rosa_laevigata	RLG00000031655
rosa_multiflora	Rmu_sc0002711.1_g000021
rosa_roxburghii	Rroxscaffold_1G00066730 Rroxscaffold_1G00067430
rosa_rugosa	Rorug04G0442000
rosa_samantha	Rh5AG072900 Rh5BG069300 Rh5DG069500
rosa_wichuraiana	Rw5G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccII	CGCG	2 cut(s)	59, 75
AciI	CCGC	6 cut(s)	101, 104, 187, 268, 302, 327
AcoI	YGGCCR	3 cut(s)	52, 105, 299
AcvI	CACGTG	1 cut(s)	86
AcyI	GRCGYC	2 cut(s)	62, 78
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	263
AjiI	CACGTC	2 cut(s)	158, 178
AjnI	CCWGG	1 cut(s)	288
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
Alw26I	GTCTC	1 cut(s)	265
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	3 cut(s)	52, 105, 299
ApeKI	GCWGC	3 cut(s)	162, 165, 190
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	41
BbrPI	CACGTG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	149, 152, 177
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BciT130I	CCWGG	1 cut(s)	290
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	7 cut(s)	102, 105, 163, 166, 188, 191, 302
BlsI	GCNGC	7 cut(s)	103, 106, 164, 167, 189, 192, 303
Bme1390I	CCNGG	2 cut(s)	39, 290
BmeT110I	CYCGRG	1 cut(s)	45
BmgBI	CACGTC	2 cut(s)	158, 178
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	39, 290
BpiI	GAAGAC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	86
BsaHI	GRCGYC	2 cut(s)	62, 78
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	149, 152, 177
Bsh1236I	CGCG	2 cut(s)	59, 75
BshFI	GGCC	3 cut(s)	54, 107, 301
BshNI	GGYRCC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	4 cut(s)	38, 51, 311, 405
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	3 cut(s)	54, 107, 301
BsoBI	CYCGRG	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	246, 276
BspACI	CCGC	6 cut(s)	101, 104, 187, 268, 302, 327
BspANI	GGCC	3 cut(s)	54, 107, 301
BspFNI	CGCG	2 cut(s)	59, 75
BspLI	GGNNCC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	246, 276
BssNI	GRCGYC	2 cut(s)	62, 78
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	145, 220
BstACI	GRCGYC	2 cut(s)	62, 78
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	52, 109
BstFNI	CGCG	2 cut(s)	59, 75
BstKTI	GATC	2 cut(s)	249, 279
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	2 cut(s)	246, 276
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 171
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	37, 288
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	2 cut(s)	59, 75
BstV1I	GCAGC	3 cut(s)	149, 152, 177
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	3 cut(s)	54, 107, 301
BtrI	CACGTC	2 cut(s)	158, 178
Cac8I	GCNNGC	2 cut(s)	52, 109
Cfr10I	RCCGGY	1 cut(s)	50
CseI	GACGC	2 cut(s)	70, 86
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	2 cut(s)	30, 169
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	2 cut(s)	248, 278
DpnII	GATC	2 cut(s)	246, 276
EaeI	YGGCCR	3 cut(s)	52, 105, 299
Eco72I	CACGTG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	288
FaeI	CATG	2 cut(s)	33, 172
FaiI	YATR	6 cut(s)	22, 24, 31, 170, 359, 369
FatI	CATG	2 cut(s)	29, 168
FauI	CCCGC	1 cut(s)	320
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	7 cut(s)	102, 105, 163, 166, 188, 191, 302
Fsp4HI	GCNGC	7 cut(s)	102, 105, 163, 166, 188, 191, 302
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	7 cut(s)	102, 105, 163, 166, 188, 191, 302
HaeIII	GGCC	3 cut(s)	54, 107, 301
HapII	CCGG	4 cut(s)	38, 51, 311, 405
HgaI	GACGC	2 cut(s)	70, 86
Hin1I	GRCGYC	2 cut(s)	62, 78
Hin1II	CATG	2 cut(s)	33, 172
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	34
HpaII	CCGG	4 cut(s)	38, 51, 311, 405
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	3 cut(s)	211, 232, 380
Hpy188I	TCNGA	3 cut(s)	130, 152, 281
Hpy8I	GTNNAC	3 cut(s)	211, 232, 380
Hpy99I	CGWCG	4 cut(s)	64, 80, 159, 182
HpyCH4III	ACNGT	2 cut(s)	145, 220
HpyCH4IV	ACGT	3 cut(s)	85, 157, 177
HpyCH4V	TGCA	2 cut(s)	4, 168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 171
HpySE526I	ACGT	3 cut(s)	85, 157, 177
Hsp92I	GRCGYC	2 cut(s)	62, 78
Hsp92II	CATG	2 cut(s)	33, 172
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	246, 276
LmnI	GCTCC	3 cut(s)	198, 281, 407
LpnPI	CCDG	9 cut(s)	51, 64, 121, 275, 302, 324, 360, 402, 418
Lsp1109I	GCAGC	3 cut(s)	149, 152, 177
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	3 cut(s)	85, 157, 177
MaeIII	GTNAC	2 cut(s)	139, 200
MalI	GATC	2 cut(s)	248, 278
MboI	GATC	2 cut(s)	246, 276
MboII	GAAGA	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	108, 130
MnlI	CCTC	7 cut(s)	79, 91, 206, 220, 229, 286, 345
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	395
MspI	CCGG	4 cut(s)	38, 51, 311, 405
MspR9I	CCNGG	2 cut(s)	39, 290
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	290
MvnI	CGCG	2 cut(s)	59, 75
MwoI	GCNNNNNNNGC	2 cut(s)	56, 171
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	2 cut(s)	246, 276
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	33, 172
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	2 cut(s)	139, 200
NspI	RCATGY	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	3 cut(s)	231, 240, 255
PctI	GAATGC	1 cut(s)	139
PdiI	GCCGGC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	34
PflFI	GACNNNGTC	1 cut(s)	64
PkrI	GCNGC	7 cut(s)	103, 106, 164, 167, 189, 192, 303
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	288
PspCI	CACGTG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	64
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	7 cut(s)	102, 105, 163, 166, 188, 191, 302
Sau3AI	GATC	2 cut(s)	246, 276
ScrFI	CCNGG	2 cut(s)	39, 290
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	7 cut(s)	88, 99, 160, 180, 231, 379, 412
SsiI	CCGC	6 cut(s)	101, 104, 187, 268, 302, 327
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	37, 288
TaaI	ACNGT	2 cut(s)	145, 220
TaiI	ACGT	3 cut(s)	88, 160, 180
TaqI	TCGA	1 cut(s)	225
TaqII	GACCGA	1 cut(s)	188
TauI	GCSGC	4 cut(s)	104, 107, 190, 304
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TseFI	GTSAC	2 cut(s)	139, 200
TseI	GCWGC	3 cut(s)	162, 165, 190
Tsp45I	GTSAC	2 cut(s)	139, 200
Tth111I	GACNNNGTC	1 cut(s)	64
XceI	RCATGY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.