Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015234

Physical Location & Seq

Genomic Coordinates Forward (+)

37735299 .. 37735718

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1288100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCAATCAGAAACGATCCCACTGGGAACATGGATTCCGGGCACTCGGCCCAGCCACGCCGCGTCCTCACGTGACATCCCACGTGAGCAACATGTCGCGGCGGCCAGCGTACAAAAACTAGTGTCAGAGAATGCCGTCACGGTTGTCGGGCGACGTGGCTGCTGCATGTGTCACGTCGTTAAACGGCTGCTCCTCGGCCACGGTGTCAACCCTACTGTTTTCGAGGTGGACGAGGACGACGAGACCGGCGTTGTCATTGAATTGCGGAAACTGACCGGAGAAGGCCAGGAGGATTGGCAGCAGTTTCCTGTGGTGTTTGTTGGCGGGAAGTTGTTTGGTGGTTTGGAGAGGGTTATGGCTACTCATATCACAGGTGAACTTGTGCCTGTATTAAAACAAGCTGGAGCTTTGTGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009987 GO:0010033 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

140

Amino Acids

15.09

Weight (kDa)

5.93

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	46 - 111	5e-13	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28480
fragaria_vesca	FvH4_3g08470
malus_domestica	MD05G1309500.v1.1 MD10G1288100.v1.1
prunus_persica	Prupe.4G053500_v2.0.a1
pyrus_communis	pycom10g24110
rosa_chinensis	RchiOBHm_Chr5g0009361
rosa_laevigata	RLG00000031655
rosa_multiflora	Rmu_sc0002711.1_g000021
rosa_roxburghii	Rroxscaffold_1G00066730 Rroxscaffold_1G00067430
rosa_rugosa	Rorug04G0442000
rosa_samantha	Rh5AG072900 Rh5BG069300 Rh5DG069500
rosa_wichuraiana	Rw5G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	62, 98
AciI	CCGC	5 cut(s)	60, 98, 101, 265, 324
AclWI	GGATC	1 cut(s)	10
AcoI	YGGCCR	2 cut(s)	102, 196
AcvI	CACGTG	2 cut(s)	71, 83
AfaI	GTAC	1 cut(s)	111
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	260
AhlI	ACTAGT	1 cut(s)	118
AjiI	CACGTC	2 cut(s)	155, 175
AjnI	CCWGG	1 cut(s)	285
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
AluBI	AGCT	2 cut(s)	401, 407
AluI	AGCT	2 cut(s)	401, 407
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	10
AoxI	GGCC	4 cut(s)	47, 102, 196, 283
ApeKI	GCWGC	4 cut(s)	159, 162, 187, 298
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	44
BbrPI	CACGTG	2 cut(s)	71, 83
BbvI	GCAGC	4 cut(s)	146, 149, 174, 310
BceAI	ACGGC	2 cut(s)	119, 200
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BciT130I	CCWGG	1 cut(s)	287
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	1 cut(s)	119
BisI	GCNGC	7 cut(s)	60, 99, 102, 160, 163, 188, 299
BlsI	GCNGC	7 cut(s)	61, 100, 103, 161, 164, 189, 300
Bme1390I	CCNGG	2 cut(s)	39, 287
BmgBI	CACGTC	2 cut(s)	155, 175
BmgT120I	GGNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	39, 287
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	39
BsaAI	YACGTR	2 cut(s)	71, 83
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	193, 199
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	193, 199
BseGI	GGATG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	4 cut(s)	146, 149, 174, 310
BseYI	CCCAGC	1 cut(s)	50
Bsh1236I	CGCG	2 cut(s)	62, 98
BshFI	GGCC	4 cut(s)	49, 104, 198, 285
BsiSI	CCGG	3 cut(s)	38, 246, 276
BsmAI	GTCTC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	4 cut(s)	49, 104, 198, 285
Bso31I	GGTCTC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	5 cut(s)	60, 98, 101, 265, 324
BspANI	GGCC	4 cut(s)	49, 104, 198, 285
BspFNI	CGCG	2 cut(s)	62, 98
BspPI	GGATC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	193, 199
BssMI	GATC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	3 cut(s)	142, 203, 217
BstBAI	YACGTR	2 cut(s)	71, 83
BstC8I	GCNNGC	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	2 cut(s)	62, 98
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	2 cut(s)	95, 169
BstSCI	CCNGG	2 cut(s)	37, 285
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	2 cut(s)	62, 98
BstV1I	GCAGC	4 cut(s)	146, 149, 174, 310
BsuRI	GGCC	4 cut(s)	49, 104, 198, 285
BtgI	CCRYGG	1 cut(s)	199
BtrI	CACGTC	2 cut(s)	155, 175
BtsCI	GGATG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	48
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	3 cut(s)	30, 92, 166
CviQI	GTAC	1 cut(s)	110
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
EaeI	YGGCCR	2 cut(s)	102, 196
Eco31I	GGTCTC	1 cut(s)	236
Eco72I	CACGTG	2 cut(s)	71, 83
EcoRII	CCWGG	1 cut(s)	285
FaeI	CATG	3 cut(s)	33, 95, 169
FaiI	YATR	6 cut(s)	31, 93, 167, 356, 366, 418
FatI	CATG	3 cut(s)	29, 91, 165
FauI	CCCGC	1 cut(s)	317
Fnu4HI	GCNGC	7 cut(s)	60, 99, 102, 160, 163, 188, 299
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	7 cut(s)	60, 99, 102, 160, 163, 188, 299
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	7 cut(s)	60, 99, 102, 160, 163, 188, 299
GsaI	CCCAGC	1 cut(s)	54
HaeIII	GGCC	4 cut(s)	49, 104, 198, 285
HapII	CCGG	3 cut(s)	38, 246, 276
HgaI	GACGC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	33, 95, 169
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	34
HpaII	CCGG	3 cut(s)	38, 246, 276
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	3 cut(s)	208, 229, 377
Hpy188I	TCNGA	2 cut(s)	10, 127
Hpy8I	GTNNAC	3 cut(s)	208, 229, 377
Hpy99I	CGWCG	3 cut(s)	156, 179, 242
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	3 cut(s)	142, 203, 217
HpyCH4IV	ACGT	4 cut(s)	70, 82, 154, 174
HpyCH4V	TGCA	2 cut(s)	4, 165
HpySE526I	ACGT	4 cut(s)	70, 82, 154, 174
Hsp92II	CATG	3 cut(s)	33, 95, 169
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	2 cut(s)	195, 404
Lsp1109I	GCAGC	4 cut(s)	146, 149, 174, 310
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	4 cut(s)	70, 82, 154, 174
MaeIII	GTNAC	3 cut(s)	71, 136, 170
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	6 cut(s)	76, 203, 217, 226, 283, 342
MseI	TTAA	2 cut(s)	180, 392
MspI	CCGG	3 cut(s)	38, 246, 276
MspR9I	CCNGG	2 cut(s)	39, 287
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	2 cut(s)	62, 98
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	3 cut(s)	33, 95, 169
NmeAIII	GCCGAG	2 cut(s)	25, 174
NmuCI	GTSAC	3 cut(s)	71, 136, 170
NspI	RCATGY	2 cut(s)	95, 169
PciI	ACATGT	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	3 cut(s)	228, 237, 246
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	7 cut(s)	61, 100, 103, 161, 164, 189, 300
PmaCI	CACGTG	2 cut(s)	71, 83
PmlI	CACGTG	2 cut(s)	71, 83
Ppu21I	YACGTR	2 cut(s)	71, 83
PscI	ACATGT	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	285
PspCI	CACGTG	2 cut(s)	71, 83
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	48
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	180, 392
SatI	GCNGC	7 cut(s)	60, 99, 102, 160, 163, 188, 299
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	48
ScrFI	CCNGG	2 cut(s)	39, 287
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	8 cut(s)	73, 85, 157, 177, 228, 376, 403, 409
SpeI	ACTAGT	1 cut(s)	118
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	5 cut(s)	60, 98, 101, 265, 324
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	37, 285
TaaI	ACNGT	3 cut(s)	142, 203, 217
TaiI	ACGT	4 cut(s)	73, 85, 157, 177
TaqI	TCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	260
TauI	GCSGC	3 cut(s)	62, 101, 104
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	180, 392
Tru9I	TTAA	2 cut(s)	180, 392
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	3 cut(s)	71, 136, 170
TseI	GCWGC	4 cut(s)	159, 162, 187, 298
Tsp45I	GTSAC	3 cut(s)	71, 136, 170
TspRI	CASTG	1 cut(s)	27
XceI	RCATGY	2 cut(s)	95, 169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.