FvH4_3g08470

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015234
Physical Location & Seq
Forward (+)
4947318 .. 4949157
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08470.t1

Sequence Viewer

Length: 432 bp
ATGCAAGCTATTCCATACGGATCGTGGGCGTCCGGCGCCCACTTGTCGACGACACGGGAGCAGCATGACGTTTCGGTTTCTGCTCCGACGACGGTGGCAGCAAGCGTACAGAAACTGGTGTCGGAGAATGCCGTTATAGTCGTTGGGAGGCGCGGCTGCTGCATGAGCCACGTGGTGACGAGGCTGTTACTCGGCCACGGCGTGAACCCAACTGTTTTCGACGTGGACGAGGACGACGAGGCCGCTGTTGTCGTTGAGCTACGTAAGATGATGACGATCGTCGGAGATGAGAGTGTTATTGACAATTGGCCGCAGTTTCCGGTGGTTTTCGTCGGCGGGAAGTTGTTTGGTGGTTTGGAGAAGGTTATGGCGACGCATATTTCCGGCGAGTTAGTTCCGGTGTTAAAAGAAGCTGGAGCTCTCTGGCTTTGA

Protein Analysis

144

Amino Acids

15.28

Weight (kDa)

5.22

Isoelectric Point (pI)

29.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 45 - 115 4.9e-11 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28480
fragaria_vesca FvH4_3g08470
malus_domestica MD05G1309500.v1.1 MD10G1288100.v1.1
prunus_persica Prupe.4G053500_v2.0.a1
pyrus_communis pycom10g24110
rosa_chinensis RchiOBHm_Chr5g0009361
rosa_laevigata RLG00000031655
rosa_multiflora Rmu_sc0002711.1_g000021
rosa_roxburghii Rroxscaffold_1G00066730 Rroxscaffold_1G00067430
rosa_rugosa Rorug04G0442000
rosa_samantha Rh5AG072900 Rh5BG069300 Rh5DG069500
rosa_wichuraiana Rw5G006810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AccI GTMKAC 1 cut(s) 47
AccII CGCG 1 cut(s) 153
AciI CCGC 4 cut(s) 153, 243, 311, 336
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 2 cut(s) 193, 308
AcvI CACGTG 1 cut(s) 172
AcyI GRCGYC 2 cut(s) 29, 36
AdeI CACNNNGTG 2 cut(s) 175, 202
AfaI GTAC 1 cut(s) 108
AjiI CACGTC 1 cut(s) 223
AluBI AGCT 4 cut(s) 8, 259, 413, 419
AluI AGCT 4 cut(s) 8, 259, 413, 419
Alw21I GWGCWC 1 cut(s) 421
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 115
AoxI GGCC 3 cut(s) 193, 240, 308
ApeKI GCWGC 4 cut(s) 61, 98, 156, 159
AspLEI GCGC 2 cut(s) 38, 153
AsuHPI GGTGA 1 cut(s) 187
BanI GGYRCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 421
BbrPI CACGTG 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 4 cut(s) 73, 110, 143, 146
BceAI ACGGC 2 cut(s) 116, 214
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 7 cut(s) 62, 99, 154, 157, 160, 243, 311
BlsI GCNGC 7 cut(s) 63, 100, 155, 158, 161, 244, 312
BmgBI CACGTC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 37
BoxI GACNNNNGTC 1 cut(s) 278
BsaAI YACGTR 2 cut(s) 172, 263
BsaBI GATNNNNATC 1 cut(s) 275
BsaHI GRCGYC 2 cut(s) 29, 36
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 2 cut(s) 319, 397
Bse1I ACTGG 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 275
BseNI ACTGG 1 cut(s) 120
BseXI GCAGC 4 cut(s) 73, 110, 143, 146
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 3 cut(s) 195, 242, 310
BshNI GGYRCC 1 cut(s) 35
BsiEI CGRYCG 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 4 cut(s) 33, 320, 384, 398
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 3 cut(s) 195, 242, 310
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 2 cut(s) 20, 276
BspACI CCGC 4 cut(s) 153, 243, 311, 336
BspANI GGCC 3 cut(s) 195, 242, 310
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 20, 276
BssNI GRCGYC 2 cut(s) 29, 36
Bst4CI ACNGT 2 cut(s) 94, 214
BstACI GRCGYC 2 cut(s) 29, 36
BstBAI YACGTR 2 cut(s) 172, 263
BstC8I GCNNGC 2 cut(s) 6, 103
BstDSI CCRYGG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 153
BstKTI GATC 2 cut(s) 23, 279
BstMBI GATC 2 cut(s) 20, 276
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 3 cut(s) 35, 159, 165
BstPAI GACNNNNGTC 1 cut(s) 278
BstSNI TACGTA 1 cut(s) 263
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 4 cut(s) 73, 110, 143, 146
BsuRI GGCC 3 cut(s) 195, 242, 310
BtgI CCRYGG 1 cut(s) 196
BtrI CACGTC 1 cut(s) 223
Cac8I GCNNGC 2 cut(s) 6, 103
CaiI CAGNNNCTG 1 cut(s) 115
CfoI GCGC 2 cut(s) 38, 153
CseI GACGC 2 cut(s) 18, 382
Csp6I GTAC 1 cut(s) 107
CviAII CATG 2 cut(s) 65, 163
CviQI GTAC 1 cut(s) 107
DinI GGCGCC 1 cut(s) 37
DpnI GATC 2 cut(s) 22, 278
DpnII GATC 2 cut(s) 20, 276
DraIII CACNNNGTG 2 cut(s) 175, 202
EaeI YGGCCR 2 cut(s) 193, 308
Ecl136II GAGCTC 1 cut(s) 419
Eco105I TACGTA 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 419
Eco72I CACGTG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 419
EcoT38I GRGCYC 1 cut(s) 421
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
FaeI CATG 2 cut(s) 68, 166
FaiI YATR 6 cut(s) 16, 66, 137, 164, 368, 378
FatI CATG 2 cut(s) 64, 162
FauI CCCGC 1 cut(s) 329
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 7 cut(s) 62, 99, 154, 157, 160, 243, 311
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 7 cut(s) 62, 99, 154, 157, 160, 243, 311
GlaI GCGC 2 cut(s) 37, 152
GluI GCNGC 7 cut(s) 62, 99, 154, 157, 160, 243, 311
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 3 cut(s) 195, 242, 310
HapII CCGG 4 cut(s) 33, 320, 384, 398
HgaI GACGC 2 cut(s) 18, 382
HhaI GCGC 2 cut(s) 38, 153
Hin1I GRCGYC 2 cut(s) 29, 36
Hin1II CATG 2 cut(s) 68, 166
Hin6I GCGC 2 cut(s) 36, 151
HinP1I GCGC 2 cut(s) 36, 151
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HpaII CCGG 4 cut(s) 33, 320, 384, 398
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 3 cut(s) 48, 205, 226
Hpy188I TCNGA 3 cut(s) 87, 124, 284
Hpy8I GTNNAC 3 cut(s) 48, 205, 226
Hpy99I CGWCG 8 cut(s) 52, 91, 94, 224, 239, 284, 335, 376
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 2 cut(s) 94, 214
HpyCH4IV ACGT 4 cut(s) 69, 171, 222, 262
HpyCH4V TGCA 2 cut(s) 4, 162
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 159, 165
HpySE526I ACGT 4 cut(s) 69, 171, 222, 262
Hsp92I GRCGYC 2 cut(s) 29, 36
Hsp92II CATG 2 cut(s) 68, 166
HspAI GCGC 2 cut(s) 36, 151
KasI GGCGCC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 20, 276
LmnI GCTCC 3 cut(s) 58, 88, 416
LpnPI CCDG 7 cut(s) 46, 101, 333, 397, 399, 409, 411
Lsp1109I GCAGC 4 cut(s) 73, 110, 143, 146
MaeII ACGT 4 cut(s) 69, 171, 222, 262
MaeIII GTNAC 2 cut(s) 175, 186
MalI GATC 2 cut(s) 22, 278
MboI GATC 2 cut(s) 20, 276
MfeI CAATTG 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 1 cut(s) 304
Mly113I GGCGCC 1 cut(s) 36
MmeI TCCRAC 3 cut(s) 102, 110, 262
MnlI CCTC 4 cut(s) 141, 174, 223, 232
MseI TTAA 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 4 cut(s) 33, 320, 384, 398
MunI CAATTG 1 cut(s) 304
Mva1269I GAATGC 1 cut(s) 133
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 35, 159, 165
NarI GGCGCC 1 cut(s) 36
NdeII GATC 2 cut(s) 20, 276
NlaIII CATG 2 cut(s) 68, 166
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 225, 234
PctI GAATGC 1 cut(s) 133
PkrI GCNGC 7 cut(s) 63, 100, 155, 158, 161, 244, 312
Ple19I CGATCG 1 cut(s) 279
PluTI GGCGCC 1 cut(s) 39
PmaCI CACGTG 1 cut(s) 172
PmlI CACGTG 1 cut(s) 172
Ppu21I YACGTR 2 cut(s) 172, 263
PshAI GACNNNNGTC 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 421
PspCI CACGTG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 115
PvuI CGATCG 1 cut(s) 279
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SacI GAGCTC 1 cut(s) 421
SalI GTCGAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 7 cut(s) 62, 99, 154, 157, 160, 243, 311
Sau3AI GATC 2 cut(s) 20, 276
SduI GDGCHC 1 cut(s) 421
SetI ASST 9 cut(s) 10, 72, 174, 225, 261, 265, 366, 415, 421
SfoI GGCGCC 1 cut(s) 37
SnaBI TACGTA 1 cut(s) 263
Sse9I AATT 1 cut(s) 304
SsiI CCGC 4 cut(s) 153, 243, 311, 336
SspDI GGCGCC 1 cut(s) 35
SstI GAGCTC 1 cut(s) 421
TaaI ACNGT 2 cut(s) 94, 214
TaiI ACGT 4 cut(s) 72, 174, 225, 265
TaqI TCGA 2 cut(s) 47, 219
TasI AATT 1 cut(s) 304
TauI GCSGC 3 cut(s) 156, 245, 313
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 4 cut(s) 61, 98, 156, 159
Tsp45I GTSAC 1 cut(s) 175
TspGWI ACGGA 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.