Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015234

Physical Location & Seq

Genomic Coordinates Reverse (-)

6032115 .. 6032534

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG069500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCAAGCAATTCCATACGGATCCTGGGCGCCGGACGTGTCGACACGGGAGGAGATTTCGCTATCTTCTCCCGTGTCGACGGTCGCAGCTACCGTTCAAAAGCTGGTATCGGAGAATGCGGTTATAGTCGTTGGGAGGCGCGGCTGCTGCATGAGCCACGTGGTGACGCGGTTGTTACTCGGCCACGGCGTGAATCCCGCGGTTTTCGACGTGGACGAGGACGACGAGGCCGCTGTTGTCGTTGAGCTACGTAAGAGGATGACGATCGTTGGAGATGAGAGTGTTATTAACAATTGGCCGCAGTTTCCGGTGGTTTTTGTCGGCGGGAAGTTGTTTGGTGGGTTGGAGAGGGTTATGGCGACGCATATTTCCGGCGAGCTAGTTCCGGTGTTAAAAGAAGCTGGAGCTCTCTGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009987 GO:0010033 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

139

Amino Acids

14.94

Weight (kDa)

5.1

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	41 - 111	2.8e-11	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28480
fragaria_vesca	FvH4_3g08470
malus_domestica	MD05G1309500.v1.1 MD10G1288100.v1.1
prunus_persica	Prupe.4G053500_v2.0.a1
pyrus_communis	pycom10g24110
rosa_chinensis	RchiOBHm_Chr5g0009361
rosa_laevigata	RLG00000031655
rosa_multiflora	Rmu_sc0002711.1_g000021
rosa_roxburghii	Rroxscaffold_1G00066730 Rroxscaffold_1G00067430
rosa_rugosa	Rorug04G0442000
rosa_samantha	Rh5AG072900 Rh5BG069300 Rh5DG069500
rosa_wichuraiana	Rw5G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccI	GTMKAC	2 cut(s)	41, 77
AccII	CGCG	3 cut(s)	141, 169, 200
AciI	CCGC	8 cut(s)	119, 141, 169, 198, 200, 231, 299, 324
AclWI	GGATC	2 cut(s)	15, 28
AcoI	YGGCCR	2 cut(s)	181, 296
AcvI	CACGTG	1 cut(s)	160
AcyI	GRCGYC	1 cut(s)	29
AdeI	CACNNNGTG	2 cut(s)	163, 190
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	98
AjiI	CACGTC	2 cut(s)	37, 211
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	6 cut(s)	89, 103, 247, 379, 401, 407
AluI	AGCT	6 cut(s)	89, 103, 247, 379, 401, 407
Alw21I	GWGCWC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	15, 28
AoxI	GGCC	3 cut(s)	181, 228, 296
ApeKI	GCWGC	3 cut(s)	86, 144, 147
AspLEI	GCGC	2 cut(s)	31, 141
AsuHPI	GGTGA	1 cut(s)	175
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	409
BbrPI	CACGTG	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	3 cut(s)	98, 131, 134
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	25
BfaI	CTAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	6 cut(s)	87, 142, 145, 148, 231, 299
BlsI	GCNGC	6 cut(s)	88, 143, 146, 149, 232, 300
Bme1390I	CCNGG	1 cut(s)	25
BmgBI	CACGTC	2 cut(s)	37, 211
BmiI	GGNNCC	2 cut(s)	22, 30
BmrFI	CCNGG	1 cut(s)	25
BsaAI	YACGTR	2 cut(s)	160, 251
BsaBI	GATNNNNATC	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	24, 184, 198
BsaWI	WCCGGW	2 cut(s)	307, 385
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	3 cut(s)	24, 184, 198
BseGI	GGATG	1 cut(s)	264
BseJI	GATNNNNATC	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	98, 131, 134
Bsh1236I	CGCG	3 cut(s)	141, 169, 200
Bsh1285I	CGRYCG	2 cut(s)	84, 267
BshFI	GGCC	3 cut(s)	183, 230, 298
BshNI	GGYRCC	1 cut(s)	28
BsiEI	CGRYCG	2 cut(s)	84, 267
BsiHKAI	GWGCWC	1 cut(s)	409
BsiSI	CCGG	4 cut(s)	32, 308, 372, 386
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	3 cut(s)	183, 230, 298
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	20, 264
BspACI	CCGC	8 cut(s)	119, 141, 169, 198, 200, 231, 299, 324
BspANI	GGCC	3 cut(s)	183, 230, 298
BspFNI	CGCG	3 cut(s)	141, 169, 200
BspLI	GGNNCC	2 cut(s)	22, 30
BspPI	GGATC	2 cut(s)	15, 28
BspT107I	GGYRCC	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	24, 184, 198
BssMI	GATC	2 cut(s)	20, 264
BssNI	GRCGYC	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	82, 94
BstACI	GRCGYC	1 cut(s)	29
BstBAI	YACGTR	2 cut(s)	160, 251
BstC8I	GCNNGC	2 cut(s)	6, 377
BstDSI	CCRYGG	2 cut(s)	184, 198
BstF5I	GGATG	1 cut(s)	264
BstFNI	CGCG	3 cut(s)	141, 169, 200
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	31, 141
BstKTI	GATC	2 cut(s)	23, 267
BstMBI	GATC	2 cut(s)	20, 264
BstMCI	CGRYCG	2 cut(s)	84, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 153
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	23
BstSNI	TACGTA	1 cut(s)	251
BstUI	CGCG	3 cut(s)	141, 169, 200
BstV1I	GCAGC	3 cut(s)	98, 131, 134
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	183, 230, 298
BtgI	CCRYGG	2 cut(s)	184, 198
BtrI	CACGTC	2 cut(s)	37, 211
BtsCI	GGATG	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	6, 377
CfoI	GCGC	2 cut(s)	31, 141
Cfr42I	CCGCGG	1 cut(s)	201
CseI	GACGC	2 cut(s)	175, 370
CviAII	CATG	1 cut(s)	151
DinI	GGCGCC	1 cut(s)	30
DpnI	GATC	2 cut(s)	22, 266
DpnII	GATC	2 cut(s)	20, 264
DraIII	CACNNNGTG	2 cut(s)	163, 190
EaeI	YGGCCR	2 cut(s)	181, 296
Ecl136II	GAGCTC	1 cut(s)	407
Eco105I	TACGTA	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	407
Eco72I	CACGTG	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	409
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
FaeI	CATG	1 cut(s)	154
FaiI	YATR	5 cut(s)	16, 125, 152, 356, 366
FatI	CATG	1 cut(s)	150
FauI	CCCGC	2 cut(s)	205, 317
FblI	GTMKAC	2 cut(s)	41, 77
Fnu4HI	GCNGC	6 cut(s)	87, 142, 145, 148, 231, 299
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	6 cut(s)	87, 142, 145, 148, 231, 299
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	2 cut(s)	30, 140
GluI	GCNGC	6 cut(s)	87, 142, 145, 148, 231, 299
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	3 cut(s)	183, 230, 298
HapII	CCGG	4 cut(s)	32, 308, 372, 386
HgaI	GACGC	2 cut(s)	175, 370
HhaI	GCGC	2 cut(s)	31, 141
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	2 cut(s)	29, 139
HinP1I	GCGC	2 cut(s)	29, 139
HincII	GTYRAC	2 cut(s)	42, 78
HindII	GTYRAC	2 cut(s)	42, 78
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	4 cut(s)	32, 308, 372, 386
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	3 cut(s)	42, 78, 214
Hpy188I	TCNGA	1 cut(s)	112
Hpy8I	GTNNAC	3 cut(s)	42, 78, 214
Hpy99I	CGWCG	4 cut(s)	82, 212, 227, 364
HpyCH4III	ACNGT	2 cut(s)	82, 94
HpyCH4IV	ACGT	4 cut(s)	36, 159, 210, 250
HpyCH4V	TGCA	2 cut(s)	4, 150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 153
HpySE526I	ACGT	4 cut(s)	36, 159, 210, 250
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	2 cut(s)	29, 139
KasI	GGCGCC	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	20, 264
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	9 cut(s)	10, 37, 45, 89, 321, 385, 387, 397, 399
Lsp1109I	GCAGC	3 cut(s)	98, 131, 134
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	4 cut(s)	36, 159, 210, 250
MaeIII	GTNAC	2 cut(s)	163, 174
MalI	GATC	2 cut(s)	22, 266
MboI	GATC	2 cut(s)	20, 264
MboII	GAAGA	1 cut(s)	57
MfeI	CAATTG	1 cut(s)	292
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	2 cut(s)	9, 292
Mly113I	GGCGCC	1 cut(s)	29
MmeI	TCCRAC	2 cut(s)	250, 324
MnlI	CCTC	6 cut(s)	43, 129, 211, 220, 249, 342
MseI	TTAA	2 cut(s)	288, 392
MspA1I	CMGCKG	2 cut(s)	200, 233
MspI	CCGG	4 cut(s)	32, 308, 372, 386
MspR9I	CCNGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	292
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	3 cut(s)	141, 169, 200
MwoI	GCNNNNNNNGC	2 cut(s)	147, 153
NarI	GGCGCC	1 cut(s)	29
NdeII	GATC	2 cut(s)	20, 264
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	2 cut(s)	22, 30
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	4 cut(s)	90, 186, 213, 222
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	6 cut(s)	88, 143, 146, 149, 232, 300
Ple19I	CGATCG	1 cut(s)	267
PluTI	GGCGCC	1 cut(s)	32
PmaCI	CACGTG	1 cut(s)	160
PmlI	CACGTG	1 cut(s)	160
Ppu21I	YACGTR	2 cut(s)	160, 251
Psp124BI	GAGCTC	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	23
PspCI	CACGTG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	22, 30
PsuI	RGATCY	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	409
SacII	CCGCGG	1 cut(s)	201
SalI	GTCGAC	2 cut(s)	40, 76
SaqAI	TTAA	2 cut(s)	288, 392
SatI	GCNGC	6 cut(s)	87, 142, 145, 148, 231, 299
Sau3AI	GATC	2 cut(s)	20, 264
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	409
SfoI	GGCGCC	1 cut(s)	30
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SnaBI	TACGTA	1 cut(s)	251
Sse9I	AATT	2 cut(s)	9, 292
SsiI	CCGC	8 cut(s)	119, 141, 169, 198, 200, 231, 299, 324
SspDI	GGCGCC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	82, 94
TaiI	ACGT	4 cut(s)	39, 162, 213, 253
TaqI	TCGA	3 cut(s)	41, 77, 207
TasI	AATT	2 cut(s)	9, 292
TauI	GCSGC	3 cut(s)	144, 233, 301
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	288, 392
Tru9I	TTAA	2 cut(s)	288, 392
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	3 cut(s)	86, 144, 147
Tsp45I	GTSAC	1 cut(s)	163
TspGWI	ACGGA	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XmiI	GTMKAC	2 cut(s)	41, 77
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.