AT1G29060

Bet1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011975
Physical Location & Seq
Forward (+)
10147605 .. 10149780
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29060.1

Sequence Viewer

Length: 405 bp
ATGGCGTCCAATCGCGGTGCGGGTGGTTCTCTATACGGCGGAGCTGATCCGTATAGATCTAGAGAAGGGCTAAGCACTAGAAATGCTTCAGGTTCAGAGGAAATTCAGCTGAGGATTGATCCTATGCACTCTGACCTGGATGATGAGATTCTAGGTCTCCATGGCCAAGTCAGGCAATTGAAAAATATTGCTCAAGAAATTGGGTCAGAAGCAAAGTCTCAGAGGGACTTCTTAGATGAACTGCAAATGACATTGATCAGAGCGCAAGCAGGGGTGAAGAACAACATAAGGAAACTGAACCTAAGCATAATCCGTAGTGGTAACAACCACATAATGCACGTAGTTCTTTTCGCGCTCCTCCTCTTCTTTATCCTCTACATGTGGTCCAAGATGTTCAAAAGATAG

Protein Analysis

134

Amino Acids

15.1

Weight (kDa)

9.45

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011975)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29060 AT1G29060 AT4G14600
fragaria_vesca FvH4_5g35960
malus_domestica MD08G1191600.v1.1 MD15G1380400.v1.1
prunus_persica Prupe.1G526600_v2.0.a1
pyrus_communis pycom08g16510 pycom15g34070
rosa_chinensis RchiOBHm_Chr7g0237701
rosa_multiflora Rmu_ssc0000067.1_g000046
rosa_roxburghii Rroxscaffold_3G00223860
rosa_rugosa Rorug07G0306500
rosa_samantha Rh2AG620100 Rh7AG463200 Rh7BG433400 Rh7CG480100 Rh7DG449100
rosa_wichuraiana Rw7G038320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 15, 353
AciI CCGC 3 cut(s) 15, 20, 39
AclWI GGATC 2 cut(s) 41, 113
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 2 cut(s) 181, 397
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 2 cut(s) 44, 109
AluI AGCT 2 cut(s) 44, 109
Alw26I GTCTC 2 cut(s) 161, 222
AlwI GGATC 2 cut(s) 41, 113
AoxI GGCC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 102
Asp700I GAANNNNTTC 1 cut(s) 85
AspLEI GCGC 2 cut(s) 265, 355
AspS9I GGNCC 1 cut(s) 384
AsuHPI GGTGA 1 cut(s) 286
AvaII GGWCC 1 cut(s) 384
BalI TGGCCA 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 137
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 161, 222
BfaI CTAG 3 cut(s) 60, 78, 152
BglII AGATCT 1 cut(s) 56
BlpI GCTNAGC 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 137
Bpu10I CCTNAGC 2 cut(s) 110, 302
Bpu1102I GCTNAGC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 340
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 101, 233
BseRI GAGGAG 2 cut(s) 347, 350
Bsh1236I CGCG 2 cut(s) 15, 353
BshFI GGCC 1 cut(s) 165
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 2 cut(s) 161, 222
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 161
Bsp143I GATC 4 cut(s) 46, 56, 118, 255
Bsp1720I GCTNAGC 1 cut(s) 71
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 3 cut(s) 15, 20, 39
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 102, 232
BspFNI CGCG 2 cut(s) 15, 353
BspPI GGATC 2 cut(s) 41, 113
BspTNI GGTCTC 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 4 cut(s) 46, 56, 118, 255
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 368
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 5 cut(s) 71, 110, 219, 232, 302
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 2 cut(s) 15, 353
BstHHI GCGC 2 cut(s) 265, 355
BstKTI GATC 4 cut(s) 49, 59, 121, 258
BstMAI GTCTC 2 cut(s) 161, 222
BstMBI GATC 4 cut(s) 46, 56, 118, 255
BstNI CCWGG 1 cut(s) 137
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 135
BstUI CGCG 2 cut(s) 15, 353
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 267
CfoI GCGC 2 cut(s) 265, 355
Cfr13I GGNCC 1 cut(s) 384
CviAII CATG 2 cut(s) 161, 379
CviJI RGCY 4 cut(s) 44, 70, 109, 165
CviKI_1 RGCY 4 cut(s) 44, 70, 109, 165
DdeI CTNAG 5 cut(s) 71, 110, 219, 232, 302
DpnI GATC 4 cut(s) 48, 58, 120, 257
DpnII GATC 4 cut(s) 46, 56, 118, 255
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
EciI GGCGGA 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 164, 382
FaiI YATR 8 cut(s) 34, 54, 125, 162, 287, 308, 332, 380
FaqI GGGAC 1 cut(s) 239
FatI CATG 2 cut(s) 160, 378
FauI CCCGC 1 cut(s) 13
FbaI TGATCA 1 cut(s) 255
FokI GGATG 1 cut(s) 152
FspBI CTAG 3 cut(s) 60, 78, 152
GlaI GCGC 2 cut(s) 264, 354
HaeIII GGCC 1 cut(s) 165
HhaI GCGC 2 cut(s) 265, 355
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 164, 382
Hin6I GCGC 2 cut(s) 263, 353
HinP1I GCGC 2 cut(s) 263, 353
HinfI GANTC 1 cut(s) 148
HphI GGTGA 1 cut(s) 286
Hpy188I TCNGA 5 cut(s) 97, 133, 208, 222, 260
Hpy188III TCNNGA 2 cut(s) 60, 194
HpyAV CCTTC 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 127, 244, 337
HpyF3I CTNAG 5 cut(s) 71, 110, 219, 232, 302
HpySE526I ACGT 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 164, 382
HspAI GCGC 2 cut(s) 263, 353
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 4 cut(s) 46, 56, 118, 255
LmnI GCTCC 2 cut(s) 41, 360
LpnPI CCDG 5 cut(s) 75, 122, 149, 157, 255
MaeI CTAG 3 cut(s) 60, 78, 152
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 320
MalI GATC 4 cut(s) 48, 58, 120, 257
MboI GATC 4 cut(s) 46, 56, 118, 255
MboII GAAGA 2 cut(s) 289, 355
MfeI CAATTG 1 cut(s) 176
MflI RGATCY 1 cut(s) 56
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 3 cut(s) 102, 176, 198
MluNI TGGCCA 1 cut(s) 165
MnlI CCTC 6 cut(s) 91, 105, 216, 368, 371, 383
Mox20I TGGCCA 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 85
MscI TGGCCA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 137
MunI CAATTG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 2 cut(s) 15, 353
NcoI CCATGG 1 cut(s) 160
NdeII GATC 4 cut(s) 46, 56, 118, 255
NlaIII CATG 2 cut(s) 164, 382
NspI RCATGY 1 cut(s) 382
PciI ACATGT 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 148
Ppu21I YACGTR 1 cut(s) 340
PscI ACATGT 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspPI GGNCC 1 cut(s) 384
PsuI RGATCY 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 109
Sau3AI GATC 4 cut(s) 46, 56, 118, 255
Sau96I GGNCC 1 cut(s) 384
ScrFI CCNGG 1 cut(s) 137
SetI ASST 7 cut(s) 46, 94, 111, 138, 157, 303, 342
SinI GGWCC 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 3 cut(s) 102, 176, 198
SsiI CCGC 3 cut(s) 15, 20, 39
SspI AATATT 1 cut(s) 187
SspMI CTAG 3 cut(s) 60, 78, 152
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 160
TaiI ACGT 1 cut(s) 342
TasI AATT 3 cut(s) 102, 176, 198
TfiI GAWTC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 2 cut(s) 39, 302
VpaK11BI GGWCC 1 cut(s) 384
XapI RAATTY 1 cut(s) 102
XbaI TCTAGA 1 cut(s) 59
XceI RCATGY 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 85
XspI CTAG 3 cut(s) 60, 78, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.