Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011975

Physical Location & Seq

Genomic Coordinates Reverse (-)

46776477 .. 46779485

Gene Structure 3009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1380400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCAGGCTATGGAAATGTGGCTCCATATAGGTCAAGGGAGGGTCTTAACCCAAGACCAGCGGCTAACATGGATGAAATCCAGTTGAGGATTGATCCGATGCATGCTGACTTGGATGAAGATATCAATGGTCTCCACAACCAAGTGAGAAGATTGAAAAATGTAGCTCAAGTTATAGGTACGGAAGCAAAATTCCAGAATGAATTTCTGGATCAGCTGCATATGACGCTGTTGAAAGGTCAAGCAGGGTTGAAGAACAATGTCAGGAGATTGAACAGAAGCATCATCCGGAGTGGATCAAACCATGTCGTCCACGTGGTGGCTTTTGGACTAGTTTGTTTCTTCGTGGTATACTTTTGGTCCAAACTGTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0019725 GO:0030003 GO:0030004 GO:0042592 GO:0043181 GO:0043182 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0055065 GO:0055067 GO:0055078 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0080134 GO:0098771 GO:1901000 GO:1901002

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.28

Weight (kDa)

9.79

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29060 AT1G29060 AT4G14600
fragaria_vesca	FvH4_5g35960
malus_domestica	MD08G1191600.v1.1 MD15G1380400.v1.1
prunus_persica	Prupe.1G526600_v2.0.a1
pyrus_communis	pycom08g16510 pycom15g34070
rosa_chinensis	RchiOBHm_Chr7g0237701
rosa_multiflora	Rmu_ssc0000067.1_g000046
rosa_roxburghii	Rroxscaffold_3G00223860
rosa_rugosa	Rorug07G0306500
rosa_samantha	Rh2AG620100 Rh7AG463200 Rh7BG433400 Rh7CG480100 Rh7DG449100
rosa_wichuraiana	Rw7G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	319
AccI	GTMKAC	1 cut(s)	351
AccIII	TCCGGA	1 cut(s)	288
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	3 cut(s)	89, 219, 304
AcsI	RAATTY	2 cut(s)	191, 203
AcvI	CACGTG	1 cut(s)	316
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	157, 235, 253, 274
AhlI	ACTAGT	1 cut(s)	331
AluBI	AGCT	2 cut(s)	167, 217
AluI	AGCT	2 cut(s)	167, 217
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	3 cut(s)	89, 219, 304
Aor13HI	TCCGGA	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	2 cut(s)	191, 203
AspS9I	GGNCC	1 cut(s)	360
AvaII	GGWCC	1 cut(s)	360
BbrPI	CACGTG	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	137
BcuI	ACTAGT	1 cut(s)	331
BfaI	CTAG	1 cut(s)	332
BisI	GCNGC	2 cut(s)	63, 218
BlsI	GCNGC	2 cut(s)	64, 219
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	2 cut(s)	90, 291
BpuEI	CTTGAG	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	82
BseAI	TCCGGA	1 cut(s)	288
BseGI	GGATG	3 cut(s)	79, 121, 285
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	94, 211, 296
BspACI	CCGC	1 cut(s)	62
BspEI	TCCGGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	24
BspPI	GGATC	3 cut(s)	89, 219, 304
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	3 cut(s)	94, 211, 296
BssNAI	GTATAC	1 cut(s)	352
Bst1107I	GTATAC	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	369
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	7, 105
BstF5I	GGATG	3 cut(s)	79, 121, 285
BstKTI	GATC	3 cut(s)	97, 214, 299
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	94, 211, 296
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	204
BstZ17I	GTATAC	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	79, 121, 285
Cac8I	GCNNGC	2 cut(s)	7, 105
Cfr13I	GGNCC	1 cut(s)	360
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	3 cut(s)	70, 104, 305
CviJI	RGCY	6 cut(s)	9, 23, 65, 167, 217, 323
CviKI_1	RGCY	6 cut(s)	9, 23, 65, 167, 217, 323
CviQI	GTAC	1 cut(s)	180
DpnI	GATC	3 cut(s)	96, 213, 298
DpnII	GATC	3 cut(s)	94, 211, 296
DraIII	CACNNNGTG	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	360
Eco72I	CACGTG	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	105
FaeI	CATG	3 cut(s)	73, 107, 308
FatI	CATG	3 cut(s)	69, 103, 304
FauNDI	CATATG	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	63, 218
FokI	GGATG	3 cut(s)	86, 128, 272
Fsp4HI	GCNGC	2 cut(s)	63, 218
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	2 cut(s)	63, 218
HapII	CCGG	1 cut(s)	289
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	3 cut(s)	73, 107, 308
HpaII	CCGG	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	313, 352
Hpy188I	TCNGA	2 cut(s)	99, 374
Hpy188III	TCNNGA	4 cut(s)	196, 209, 265, 289
Hpy8I	GTNNAC	2 cut(s)	313, 352
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	103, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	73, 107, 308
Kpn2I	TCCGGA	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	94, 211, 296
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	72, 95, 194, 209, 231, 250, 302
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	2 cut(s)	90, 291
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	315
MalI	GATC	3 cut(s)	96, 213, 298
MboI	GATC	3 cut(s)	94, 211, 296
MboII	GAAGA	4 cut(s)	131, 162, 265, 334
MluCI	AATT	2 cut(s)	191, 203
MnlI	CCTC	2 cut(s)	34, 81
Mph1103I	ATGCAT	1 cut(s)	105
MroI	TCCGGA	1 cut(s)	288
MseI	TTAA	1 cut(s)	48
MspA1I	CMGCKG	2 cut(s)	62, 217
MspI	CCGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	226
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	3 cut(s)	94, 211, 296
NlaIII	CATG	3 cut(s)	73, 107, 308
NlaIV	GGNNCC	1 cut(s)	24
NsiI	ATGCAT	1 cut(s)	105
NspI	RCATGY	1 cut(s)	107
PaeI	GCATGC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	64, 219
PmaCI	CACGTG	1 cut(s)	316
PmlI	CACGTG	1 cut(s)	316
Ppu21I	YACGTR	1 cut(s)	316
PspCI	CACGTG	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	63, 218
Sau3AI	GATC	3 cut(s)	94, 211, 296
Sau96I	GGNCC	1 cut(s)	360
SetI	ASST	6 cut(s)	35, 169, 181, 219, 241, 318
SfaNI	GCATC	2 cut(s)	90, 291
SinI	GGWCC	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
SpeI	ACTAGT	1 cut(s)	331
SphI	GCATGC	1 cut(s)	107
Sse9I	AATT	2 cut(s)	191, 203
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	1 cut(s)	318
TasI	AATT	2 cut(s)	191, 203
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	90, 132, 216
TspGWI	ACGGA	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	2 cut(s)	191, 203
XceI	RCATGY	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.