Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011975

Physical Location & Seq

Genomic Coordinates Reverse (-)

24515617 .. 24518169

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1191600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCAGGCTATGGAAATGTTGTCCCATATAGATCAAGGAAGGGTCTTAACCCAAGACCAGCGGCTAACATGGACGAAATCCAATTGAGGATTGATCCAATGTATGCTGACTTGGATGAAGACATCAAAGGCCTCCACAACCAAGTAGCTCAAGTTATAGGTACGGAAGCAAAATTCCAGAATGAATTTCTGGATCAGCTGAACAATGTCAGGAGATTGAACCGAAGCATCGTCCGGAGTGGATCAAACCATGTTGTCCACGTGGTGGCTTTTGGACTACTTTTTTTCTTCGTGGTATACTTTTGGTCCAAACTGTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0019725 GO:0030003 GO:0030004 GO:0042592 GO:0043181 GO:0043182 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0055065 GO:0055067 GO:0055078 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0080134 GO:0098771 GO:1901000 GO:1901002

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.34

Weight (kDa)

9.52

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29060 AT1G29060 AT4G14600
fragaria_vesca	FvH4_5g35960
malus_domestica	MD08G1191600.v1.1 MD15G1380400.v1.1
prunus_persica	Prupe.1G526600_v2.0.a1
pyrus_communis	pycom08g16510 pycom15g34070
rosa_chinensis	RchiOBHm_Chr7g0237701
rosa_multiflora	Rmu_ssc0000067.1_g000046
rosa_roxburghii	Rroxscaffold_3G00223860
rosa_rugosa	Rorug07G0306500
rosa_samantha	Rh2AG620100 Rh7AG463200 Rh7BG433400 Rh7CG480100 Rh7DG449100
rosa_wichuraiana	Rw7G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	297
AccIII	TCCGGA	1 cut(s)	234
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	3 cut(s)	89, 201, 250
AcsI	RAATTY	2 cut(s)	173, 185
AcvI	CACGTG	1 cut(s)	262
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	220
AluBI	AGCT	2 cut(s)	149, 199
AluI	AGCT	2 cut(s)	149, 199
AlwI	GGATC	3 cut(s)	89, 201, 250
Aor13HI	TCCGGA	1 cut(s)	234
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	173, 185
AspS9I	GGNCC	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	306
BbrPI	CACGTG	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	126
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	306
BmsI	GCATC	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	234
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	32, 94, 193, 242
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	234
BspPI	GGATC	3 cut(s)	89, 201, 250
BssMI	GATC	4 cut(s)	32, 94, 193, 242
BssNAI	GTATAC	1 cut(s)	298
Bst1107I	GTATAC	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	315
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	4 cut(s)	35, 97, 196, 245
BstMBI	GATC	4 cut(s)	32, 94, 193, 242
BstV2I	GAAGAC	1 cut(s)	126
BstZ17I	GTATAC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	2 cut(s)	70, 251
CviJI	RGCY	6 cut(s)	9, 65, 132, 149, 199, 269
CviKI_1	RGCY	6 cut(s)	9, 65, 132, 149, 199, 269
CviQI	GTAC	1 cut(s)	162
DpnI	GATC	4 cut(s)	34, 96, 195, 244
DpnII	GATC	4 cut(s)	32, 94, 193, 242
DraIII	CACNNNGTG	1 cut(s)	265
Eco147I	AGGCCT	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	306
Eco72I	CACGTG	1 cut(s)	262
FaeI	CATG	2 cut(s)	73, 254
FaiI	YATR	8 cut(s)	12, 28, 30, 71, 105, 158, 252, 298
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	2 cut(s)	69, 250
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	235
Hin1II	CATG	2 cut(s)	73, 254
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	259, 298
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	4 cut(s)	178, 191, 211, 235
Hpy8I	GTNNAC	2 cut(s)	259, 298
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4IV	ACGT	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	73, 254
Kpn2I	TCCGGA	1 cut(s)	234
Kzo9I	GATC	4 cut(s)	32, 94, 193, 242
LpnPI	CCDG	5 cut(s)	72, 176, 191, 196, 248
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	1 cut(s)	261
MalI	GATC	4 cut(s)	34, 96, 195, 244
MboI	GATC	4 cut(s)	32, 94, 193, 242
MboII	GAAGA	2 cut(s)	131, 280
MfeI	CAATTG	1 cut(s)	83
MluCI	AATT	3 cut(s)	83, 173, 185
MnlI	CCTC	2 cut(s)	81, 143
MroI	TCCGGA	1 cut(s)	234
MseI	TTAA	1 cut(s)	48
MspA1I	CMGCKG	2 cut(s)	62, 199
MspI	CCGG	1 cut(s)	235
MunI	CAATTG	1 cut(s)	83
NdeII	GATC	4 cut(s)	32, 94, 193, 242
NlaIII	CATG	2 cut(s)	73, 254
PceI	AGGCCT	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	64
PmaCI	CACGTG	1 cut(s)	262
PmlI	CACGTG	1 cut(s)	262
Ppu21I	YACGTR	1 cut(s)	262
PspCI	CACGTG	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	32, 94, 193, 242
Sau96I	GGNCC	1 cut(s)	306
SetI	ASST	4 cut(s)	151, 163, 201, 264
SfaNI	GCATC	1 cut(s)	237
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	3 cut(s)	83, 173, 185
SseBI	AGGCCT	1 cut(s)	132
SsiI	CCGC	1 cut(s)	62
StuI	AGGCCT	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	315
TaiI	ACGT	1 cut(s)	264
TasI	AATT	3 cut(s)	83, 173, 185
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	132, 198
TspGWI	ACGGA	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	2 cut(s)	173, 185
XmiI	GTMKAC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.