Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000067.1

Orthogroup ID

OG0011975

Physical Location & Seq

Genomic Coordinates Reverse (-)

174737 .. 177688

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000067.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggctaagtctcgctctttgctcaaaataacagcctctaccctttcttctcgtctaagccccaagaatcccaaccctacatttctctcgcttcttcctcttctctccgactcttacgtcagcaccgtcaccgttaccgttactgttaccgtcgctcggagataccgtattctgatcgccggcgaagcctctaccctttcttctcgtctaagccccaagaatcccaaccctacatttctctcgcttcttcctcttctctccgactcttacgtcagcaccgtcaccgttaccgttactgttaccgtcgctcggagataccgtattctgatcgccggcgaaggtagtgaagaaaagtttgaatctttgatagatgaaatccaattgaggattgatccaatccacgccgacgtcgatgaggagatcaccggtcttcgatcccaagtcagaagattgagaaacgtggctcaagagattgaggttgaagccaaatctcagaatgctatgctcaatcagctggacatgacagtgatgaaagctcaagcatggttgaagaataatgtcaggagattgaacaagagcaccatccagagtggttcaaaccatgttgtccatgtggtgtgttttgcgctcatttgtttctttttggtgtacttttggtcaaagatatccagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0019725 GO:0030003 GO:0030004 GO:0042592 GO:0043181 GO:0043182 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0055065 GO:0055067 GO:0055078 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0080134 GO:0098771 GO:1901000 GO:1901002

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

25.05

Weight (kDa)

9.84

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29060 AT1G29060 AT4G14600
fragaria_vesca	FvH4_5g35960
malus_domestica	MD08G1191600.v1.1 MD15G1380400.v1.1
prunus_persica	Prupe.1G526600_v2.0.a1
pyrus_communis	pycom08g16510 pycom15g34070
rosa_chinensis	RchiOBHm_Chr7g0237701
rosa_multiflora	Rmu_ssc0000067.1_g000046
rosa_roxburghii	Rroxscaffold_3G00223860
rosa_rugosa	Rorug07G0306500
rosa_samantha	Rh2AG620100 Rh7AG463200 Rh7BG433400 Rh7CG480100 Rh7DG449100
rosa_wichuraiana	Rw7G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	116, 269
AatII	GACGTC	1 cut(s)	411
AclWI	GGATC	2 cut(s)	386, 429
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	1 cut(s)	650
AfiI	CCNNNNNNNGG	2 cut(s)	156, 309
AgeI	ACCGGT	1 cut(s)	425
AgsI	TTSAA	5 cut(s)	359, 482, 550, 571, 597
AluBI	AGCT	2 cut(s)	514, 536
AluI	AGCT	2 cut(s)	514, 536
Alw21I	GWGCWC	1 cut(s)	581
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	2 cut(s)	386, 429
AsiGI	ACCGGT	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	628
AsuHPI	GGTGA	3 cut(s)	121, 274, 415
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	581
BccI	CCATC	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	422
BpuEI	CTTGAG	2 cut(s)	450, 522
BsaHI	GRCGYC	1 cut(s)	408
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	4 cut(s)	151, 181, 304, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 309
Bse118I	RCCGGY	3 cut(s)	179, 332, 425
BseGI	GGATG	1 cut(s)	582
BseLI	CCNNNNNNNGG	2 cut(s)	156, 309
BseMII	CTCAG	1 cut(s)	506
BseRI	GAGGAG	1 cut(s)	431
BshTI	ACCGGT	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	581
BsiSI	CCGG	3 cut(s)	180, 333, 426
BslI	CCNNNNNNNGG	2 cut(s)	156, 309
BsmAI	GTCTC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	581
Bsp143I	GATC	5 cut(s)	174, 327, 391, 420, 434
BspCNI	CTCAG	1 cut(s)	505
BspPI	GGATC	2 cut(s)	386, 429
BsrFI	RCCGGY	3 cut(s)	179, 332, 425
BssAI	RCCGGY	3 cut(s)	179, 332, 425
BssMI	GATC	5 cut(s)	174, 327, 391, 420, 434
BssNI	GRCGYC	1 cut(s)	408
Bst6I	CTCTTC	2 cut(s)	105, 258
BstACI	GRCGYC	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	181, 334
BstDEI	CTNAG	4 cut(s)	6, 56, 209, 492
BstF5I	GGATG	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	628
BstKTI	GATC	5 cut(s)	177, 330, 394, 423, 437
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	5 cut(s)	174, 327, 391, 420, 434
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 511
BstV2I	GAAGAC	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	2 cut(s)	181, 334
CfoI	GCGC	1 cut(s)	628
Cfr10I	RCCGGY	3 cut(s)	179, 332, 425
Csp6I	GTAC	1 cut(s)	649
CspAI	ACCGGT	1 cut(s)	425
CviAII	CATG	4 cut(s)	520, 543, 602, 611
CviJI	RGCY	9 cut(s)	5, 35, 60, 188, 213, 464, 485, 514, 536
CviKI_1	RGCY	9 cut(s)	5, 35, 60, 188, 213, 464, 485, 514, 536
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	4 cut(s)	6, 56, 209, 492
DpnI	GATC	5 cut(s)	176, 329, 393, 422, 436
DpnII	GATC	5 cut(s)	174, 327, 391, 420, 434
DrdI	GACNNNNNNGTC	2 cut(s)	116, 269
DseDI	GACNNNNNNGTC	2 cut(s)	116, 269
Eam1104I	CTCTTC	2 cut(s)	105, 258
EarI	CTCTTC	2 cut(s)	105, 258
Eco32I	GATATC	1 cut(s)	666
EcoRV	GATATC	1 cut(s)	666
FaeI	CATG	4 cut(s)	523, 546, 605, 614
FaiI	YATR	5 cut(s)	503, 521, 544, 603, 612
FatI	CATG	4 cut(s)	519, 542, 601, 610
FokI	GGATG	1 cut(s)	569
GlaI	GCGC	1 cut(s)	627
HapII	CCGG	3 cut(s)	180, 333, 426
HhaI	GCGC	1 cut(s)	628
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	4 cut(s)	523, 546, 605, 614
Hin6I	GCGC	1 cut(s)	626
HinP1I	GCGC	1 cut(s)	626
HinfI	GANTC	5 cut(s)	67, 110, 220, 263, 359
HpaII	CCGG	3 cut(s)	180, 333, 426
HphI	GGTGA	3 cut(s)	121, 274, 415
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	8 cut(s)	109, 159, 174, 262, 312, 327, 446, 495
Hpy188III	TCNNGA	4 cut(s)	467, 562, 586, 669
Hpy8I	GTNNAC	1 cut(s)	649
Hpy99I	CGWCG	4 cut(s)	155, 308, 410, 413
HpyAV	CCTTC	1 cut(s)	332
HpyCH4IV	ACGT	4 cut(s)	117, 270, 408, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 511
HpyF3I	CTNAG	4 cut(s)	6, 56, 209, 492
HpySE526I	ACGT	4 cut(s)	117, 270, 408, 459
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	4 cut(s)	523, 546, 605, 614
HspAI	GCGC	1 cut(s)	626
KroI	GCCGGC	2 cut(s)	179, 332
KroNI	GCCGGC	2 cut(s)	181, 334
Kzo9I	GATC	5 cut(s)	174, 327, 391, 420, 434
LpnPI	CCDG	6 cut(s)	193, 346, 439, 500, 547, 599
MaeII	ACGT	4 cut(s)	117, 270, 408, 459
MaeIII	GTNAC	8 cut(s)	127, 133, 139, 145, 280, 286, 292, 298
MalI	GATC	5 cut(s)	176, 329, 393, 422, 436
MboI	GATC	5 cut(s)	174, 327, 391, 420, 434
MfeI	CAATTG	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	581
MluCI	AATT	1 cut(s)	380
MlyI	GAGTC	2 cut(s)	104, 257
MmeI	TCCRAC	2 cut(s)	132, 285
MnlI	CCTC	7 cut(s)	46, 108, 199, 261, 378, 409, 469
MreI	CGCCGGCG	2 cut(s)	179, 332
MroNI	GCCGGC	2 cut(s)	179, 332
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	514
MspI	CCGG	3 cut(s)	180, 333, 426
MunI	CAATTG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	502
MwoI	GCNNNNNNNGC	2 cut(s)	185, 511
NaeI	GCCGGC	2 cut(s)	181, 334
NdeII	GATC	5 cut(s)	174, 327, 391, 420, 434
NgoMIV	GCCGGC	2 cut(s)	179, 332
NlaIII	CATG	4 cut(s)	523, 546, 605, 614
NmuCI	GTSAC	2 cut(s)	127, 280
PcsI	WCGNNNNNNNCGW	5 cut(s)	123, 163, 276, 316, 408
PctI	GAATGC	1 cut(s)	502
PdiI	GCCGGC	2 cut(s)	181, 334
PfeI	GAWTC	3 cut(s)	67, 220, 359
PinAI	ACCGGT	1 cut(s)	425
PleI	GAGTC	2 cut(s)	104, 257
PpsI	GAGTC	2 cut(s)	104, 257
PvuII	CAGCTG	1 cut(s)	514
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	1 cut(s)	524
Sau3AI	GATC	5 cut(s)	174, 327, 391, 420, 434
SchI	GAGTC	2 cut(s)	104, 257
SduI	GDGCHC	1 cut(s)	581
SetI	ASST	8 cut(s)	120, 273, 343, 411, 462, 480, 516, 538
SgrAI	CRCCGGYG	2 cut(s)	179, 332
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	2 cut(s)	465, 537
SmoI	CTYRAG	2 cut(s)	465, 537
Sse9I	AATT	1 cut(s)	380
TaiI	ACGT	4 cut(s)	120, 273, 411, 462
TaqI	TCGA	2 cut(s)	411, 433
TasI	AATT	1 cut(s)	380
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	3 cut(s)	67, 220, 359
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	2 cut(s)	127, 280
Tsp45I	GTSAC	2 cut(s)	127, 280
TspDTI	ATGAA	2 cut(s)	387, 545
TspRI	CASTG	1 cut(s)	531
ZraI	GACGTC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.