FvH4_5g35960

Bet1-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
26362978 .. 26365435
2458 bp
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UTR
Exon/CDS
Intron
FvH4_5g35960.t1

Sequence Viewer

Length: 327 bp
ATGACGCACAGAAGGGCTAACCCAGATGAAATCCAATTGAGGATTGATCCGATTCACGCTGATGTTGATGAGGAGATCACCGGCCTTCGATCCCAAGTCAGAAGATTGAGAAACGTGGCTCAAGAGATTGAAGTCGAAGCCAAATCTCAGAATGCTATGCTCAATCAGCTGGACATGACTGTGATGAAAGCTCAAGCGTGGTTGAAGAACAATGTCAGGAGATTGAACAAGAGCACCATCCAGAGTGGTTCAAACCATGTTGTCCATGTGGTGTGCTTTGCGCTAGGTTTTTTCTTTCTGGTGTACTTTTGTTTAAAGTTTTTTTAG

Protein Analysis

109

Amino Acids

12.56

Weight (kDa)

9.18

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011975)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 41, 84
AfaI GTAC 1 cut(s) 305
AgsI TTSAA 4 cut(s) 131, 205, 226, 252
AluBI AGCT 2 cut(s) 169, 191
AluI AGCT 2 cut(s) 169, 191
Alw21I GWGCWC 1 cut(s) 236
AlwI GGATC 2 cut(s) 41, 84
AoxI GGCC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 236
BccI CCATC 1 cut(s) 245
BfaI CTAG 1 cut(s) 284
BpuEI CTTGAG 2 cut(s) 105, 177
Bse118I RCCGGY 1 cut(s) 80
BseGI GGATG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 81
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 3 cut(s) 46, 75, 89
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 160
BspPI GGATC 2 cut(s) 41, 84
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssMI GATC 3 cut(s) 46, 75, 89
Bst4CI ACNGT 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 3 cut(s) 49, 78, 92
BstMBI GATC 3 cut(s) 46, 75, 89
BstMWI GCNNNNNNNGC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 237
CfoI GCGC 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 80
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 304
CviAII CATG 3 cut(s) 175, 257, 266
CviJI RGCY 6 cut(s) 17, 84, 119, 140, 169, 191
CviKI_1 RGCY 6 cut(s) 17, 84, 119, 140, 169, 191
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 48, 77, 91
DpnII GATC 3 cut(s) 46, 75, 89
DraI TTTAAA 1 cut(s) 315
FaeI CATG 3 cut(s) 178, 260, 269
FaiI YATR 4 cut(s) 158, 176, 258, 267
FatI CATG 3 cut(s) 174, 256, 265
FokI GGATG 1 cut(s) 224
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 84
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 283
Hin1II CATG 3 cut(s) 178, 260, 269
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 3 cut(s) 51, 101, 150
Hpy188III TCNNGA 3 cut(s) 122, 217, 241
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 6, 95
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 3 cut(s) 178, 260, 269
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 3 cut(s) 46, 75, 89
LpnPI CCDG 6 cut(s) 36, 94, 155, 202, 254, 284
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 114
MalI GATC 3 cut(s) 48, 77, 91
MboI GATC 3 cut(s) 46, 75, 89
MboII GAAGA 2 cut(s) 114, 217
MfeI CAATTG 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 1 cut(s) 35
MnlI CCTC 2 cut(s) 33, 64
MseI TTAA 1 cut(s) 314
MslI CAYNNNNRTG 2 cut(s) 60, 179
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 81
MunI CAATTG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 3 cut(s) 46, 75, 89
NlaIII CATG 3 cut(s) 178, 260, 269
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 2 cut(s) 60, 179
SaqAI TTAA 1 cut(s) 314
Sau3AI GATC 3 cut(s) 46, 75, 89
SduI GDGCHC 1 cut(s) 236
SetI ASST 4 cut(s) 117, 171, 193, 289
SmiMI CAYNNNNRTG 2 cut(s) 60, 179
SmlI CTYRAG 2 cut(s) 120, 192
SmoI CTYRAG 2 cut(s) 120, 192
Sse9I AATT 1 cut(s) 35
SspMI CTAG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 88, 135
TasI AATT 1 cut(s) 35
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 42, 200
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.