AT1G29140

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009996
Physical Location & Seq
Forward (+)
10178902 .. 10180225
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29140.1

Sequence Viewer

Length: 516 bp
ATGGCCAAATTCTTCATTGTCTTCCTTGCCTCTGCCCTATGTTTCACCACCCTCGTTCACTTCACCGCAGCTGATGCCGACGACTTTGACAAATTCCACATCAAGGGCTCCGTCTACTGCGACACATGCCGTGTCCAATTCATCACCCGTATCAGCAAATTTCTCGAGGGGGCAAAGGTAAAGCTTGAGTGCAAGGGTCGTGAGAACCAGACAGTGACCCTAACCAAAGAAGCCGTGACCGACAACGCCGGTAACTACCAGATGGAAGTAATGGGTGACCACGAAGAGGAAGTGTGCGAGATCGTCCTCCTCCAATCACCTGACCCAGAGTGTGGAGACGTGAACAACCAAGAATTCCTAAGAAACGCAGCCAGAATCAGTCTCACGGCCAATGATGGCATTGTCTCCAACGAGACTCGAACCATTAACCCACTTGGGTTCATGAGGAAGACTCCTCTCGCTGAATGCCCTCAAGTTTTCAAGGAGCTTGGAATCGTCCCTGACGTCACCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

171

Amino Acids

19.09

Weight (kDa)

4.88

Isoelectric Point (pI)

26.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 34 - 118 7.2e-21 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29140 AT4G18596 AT4G18596 AT5G45880
fragaria_vesca FvH4_3g07791
malus_domestica MD05G1301300.v1.1 MD10G1280200.v1.1
prunus_persica Prupe.4G061100_v2.0.a1
pyrus_communis pycom05g27910
rosa_chinensis RchiOBHm_Chr5g0010771
rosa_laevigata RLG00000031778
rosa_multiflora Rmu_sc0000109.1_g000021
rosa_roxburghii Rroxscaffold_1G00065610
rosa_rugosa Rorug04G0452100
rosa_samantha Rh5AG084000 Rh5AG084400 Rh5BG079200 Rh5CG092000 Rh5DG079400
rosa_wichuraiana Rw0G000580 Rw0G022280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 507
AccB7I CCANNNNNTGG 1 cut(s) 332
AccI GTMKAC 1 cut(s) 114
AciI CCGC 1 cut(s) 66
AcoI YGGCCR 2 cut(s) 3, 387
AcsI RAATTY 4 cut(s) 8, 92, 158, 353
AcyI GRCGYC 1 cut(s) 504
AfiI CCNNNNNNNGG 3 cut(s) 103, 286, 332
AgsI TTSAA 1 cut(s) 481
AjiI CACGTC 1 cut(s) 340
AluBI AGCT 3 cut(s) 71, 184, 487
AluI AGCT 3 cut(s) 71, 184, 487
Alw26I GTCTC 4 cut(s) 330, 386, 407, 409
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 3, 387
ApeKI GCWGC 2 cut(s) 68, 368
ApoI RAATTY 4 cut(s) 8, 92, 158, 353
AsuHPI GGTGA 6 cut(s) 37, 55, 136, 287, 309, 499
AvaI CYCGRG 1 cut(s) 164
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 110
BbsI GAAGAC 2 cut(s) 13, 455
BbvI GCAGC 2 cut(s) 80, 380
BccI CCATC 2 cut(s) 256, 389
BceAI ACGGC 3 cut(s) 114, 218, 402
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BcoDI GTCTC 4 cut(s) 330, 386, 407, 409
BisI GCNGC 2 cut(s) 69, 369
BlsI GCNGC 2 cut(s) 70, 370
BmeT110I CYCGRG 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 2 cut(s) 13, 455
BplI GAGNNNNNCTC 2 cut(s) 436, 468
BpuEI CTTGAG 2 cut(s) 206, 456
BsaHI GRCGYC 1 cut(s) 504
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 286, 332
Bse118I RCCGGY 1 cut(s) 248
BseLI CCNNNNNNNGG 3 cut(s) 103, 286, 332
BseRI GAGGAG 2 cut(s) 299, 444
BseXI GCAGC 2 cut(s) 80, 380
BshFI GGCC 2 cut(s) 5, 389
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 3 cut(s) 103, 286, 332
BsmAI GTCTC 4 cut(s) 330, 386, 407, 409
BsmBI CGTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 2 cut(s) 5, 389
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 300
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 5, 389
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 248
BssMI GATC 1 cut(s) 300
BssNI GRCGYC 1 cut(s) 504
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 504
BstAPI GCANNNNNTGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 359
BstEII GGTNACC 1 cut(s) 275
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 4 cut(s) 330, 386, 407, 409
BstMBI GATC 1 cut(s) 300
BstMWI GCNNNNNNNGC 2 cut(s) 74, 126
BstNSI RCATGY 1 cut(s) 129
BstPI GGTNACC 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 80, 380
BstV2I GAAGAC 2 cut(s) 13, 455
BsuRI GGCC 2 cut(s) 5, 389
BtrI CACGTC 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 219
CciI TCATGA 1 cut(s) 441
Cfr10I RCCGGY 1 cut(s) 248
CviAII CATG 2 cut(s) 126, 442
CviJI RGCY 8 cut(s) 5, 71, 108, 184, 233, 371, 389, 487
CviKI_1 RGCY 8 cut(s) 5, 71, 108, 184, 233, 371, 389, 487
DdeI CTNAG 1 cut(s) 359
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
EaeI YGGCCR 2 cut(s) 3, 387
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 164
Eco91I GGTNACC 1 cut(s) 275
EcoO65I GGTNACC 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 2 cut(s) 129, 445
FaiI YATR 3 cut(s) 40, 127, 443
FaqI GGGAC 1 cut(s) 482
FatI CATG 2 cut(s) 125, 441
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 69, 369
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 2 cut(s) 69, 369
GluI GCNGC 2 cut(s) 69, 369
HaeIII GGCC 2 cut(s) 5, 389
HapII CCGG 1 cut(s) 249
Hin1I GRCGYC 1 cut(s) 504
Hin1II CATG 2 cut(s) 129, 445
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 4 cut(s) 375, 415, 451, 492
HpaII CCGG 1 cut(s) 249
HphI GGTGA 6 cut(s) 37, 55, 136, 287, 309, 499
Hpy166II GTNNAC 3 cut(s) 58, 115, 343
Hpy188III TCNNGA 3 cut(s) 164, 200, 442
Hpy8I GTNNAC 3 cut(s) 58, 115, 343
Hpy99I CGWCG 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 2 cut(s) 339, 504
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 126
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 2 cut(s) 339, 504
Hsp92I GRCGYC 1 cut(s) 504
Hsp92II CATG 2 cut(s) 129, 445
Kzo9I GATC 1 cut(s) 300
LmnI GCTCC 2 cut(s) 113, 484
LpnPI CCDG 6 cut(s) 221, 262, 272, 333, 339, 385
Lsp1109I GCAGC 2 cut(s) 80, 380
LweI GCATC 1 cut(s) 64
MaeII ACGT 2 cut(s) 339, 504
MaeIII GTNAC 5 cut(s) 214, 235, 251, 275, 505
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 4 cut(s) 4, 13, 296, 460
MhlI GDGCHC 1 cut(s) 110
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 8, 92, 137, 158, 353
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 409, 445
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 9 cut(s) 40, 62, 160, 280, 317, 320, 438, 465, 480
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 426
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 470
MwoI GCNNNNNNNGC 2 cut(s) 74, 126
NdeII GATC 1 cut(s) 300
NlaIII CATG 2 cut(s) 129, 445
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 4 cut(s) 214, 235, 275, 505
NspI RCATGY 1 cut(s) 129
PaeR7I CTCGAG 1 cut(s) 164
PagI TCATGA 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PctI GAATGC 1 cut(s) 470
PfeI GAWTC 2 cut(s) 375, 492
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 2 cut(s) 70, 370
PleI GAGTC 2 cut(s) 409, 445
PpsI GAGTC 2 cut(s) 409, 445
PspEI GGTNACC 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 2 cut(s) 69, 369
Sau3AI GATC 1 cut(s) 300
SchI GAGTC 2 cut(s) 409, 445
SduI GDGCHC 1 cut(s) 110
SetI ASST 8 cut(s) 73, 180, 186, 322, 342, 489, 507, 512
SfaNI GCATC 1 cut(s) 64
Sfr274I CTCGAG 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 3 cut(s) 164, 185, 471
SmoI CTYRAG 3 cut(s) 164, 185, 471
Sse9I AATT 5 cut(s) 8, 92, 137, 158, 353
SsiI CCGC 1 cut(s) 66
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 2 cut(s) 342, 507
TaqI TCGA 2 cut(s) 165, 418
TaqII GACCGA 1 cut(s) 254
TasI AATT 5 cut(s) 8, 92, 137, 158, 353
TfiI GAWTC 2 cut(s) 375, 492
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 4 cut(s) 214, 235, 275, 505
TseI GCWGC 2 cut(s) 68, 368
Tsp45I GTSAC 4 cut(s) 214, 235, 275, 505
TspDTI ATGAA 3 cut(s) 4, 130, 430
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 332
XapI RAATTY 4 cut(s) 8, 92, 158, 353
XceI RCATGY 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 114
ZraI GACGTC 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.