FvH4_3g07791

Olee1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009996
Physical Location & Seq
Reverse (-)
4595443 .. 4596467
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07791.t1

Sequence Viewer

Length: 510 bp
ATGGCCAAGTATAGTACTATCATCCTTGCTTCAGCCCTTTGCCTGTTGTCTCTCATCGACAGCGCTTACAGCGAAGAAAAGGCAAAACTCCAGGTTGAAGGCGTAGTCTTTTGTGACAGCTGCCGCATCCAGTTCATCACCAGAATCGACAAGCTTATTCAAGGGGCAAAGGTGAAGTTGGAATGCAAGGACCTGGACAGTGGTAGCATAACATACAGCAAGGAGGCCGAGACTAACGAGCAAGGAAGGTACTCAATTGAGGTGGATAGTGACCATGAGGAGGAGGAGTGCGAGGTGGTGCTGGTGAGCAGCCCCGACGAGGACTGCAACCAGATTAGCCACGAGTTACACCAACAGATCAGCGCGAGGATTAGTCTCACACAGCACAATGGAATCGCCGGACCGGTGCGCATTCCCAACCCTCTTGGCTTCATGAAGAAGGAACCTGCTCCTGAGTGCCCTCAGGTGCTCAAGGAGCTCGGACTCACTCCCGATGGCAACGTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

170

Amino Acids

18.59

Weight (kDa)

4.71

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 32 - 115 2.4e-21 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29140 AT4G18596 AT4G18596 AT5G45880
fragaria_vesca FvH4_3g07791
malus_domestica MD05G1301300.v1.1 MD10G1280200.v1.1
prunus_persica Prupe.4G061100_v2.0.a1
pyrus_communis pycom05g27910
rosa_chinensis RchiOBHm_Chr5g0010771
rosa_laevigata RLG00000031778
rosa_multiflora Rmu_sc0000109.1_g000021
rosa_roxburghii Rroxscaffold_1G00065610
rosa_rugosa Rorug04G0452100
rosa_samantha Rh5AG084000 Rh5AG084400 Rh5BG079200 Rh5CG092000 Rh5DG079400
rosa_wichuraiana Rw0G000580 Rw0G022280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 454
AccII CGCG 1 cut(s) 365
AciI CCGC 1 cut(s) 124
AclI AACGTT 1 cut(s) 501
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 15
AfaI GTAC 2 cut(s) 16, 251
AfeI AGCGCT 1 cut(s) 64
AfiI CCNNNNNNNGG 2 cut(s) 280, 319
AgeI ACCGGT 1 cut(s) 403
AgsI TTSAA 2 cut(s) 98, 161
AjnI CCWGG 2 cut(s) 90, 192
AluBI AGCT 3 cut(s) 120, 154, 478
AluI AGCT 3 cut(s) 120, 154, 478
Alw21I GWGCWC 2 cut(s) 471, 480
Alw26I GTCTC 3 cut(s) 54, 224, 380
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 2 cut(s) 3, 225
ApeKI GCWGC 2 cut(s) 120, 309
AsiGI ACCGGT 1 cut(s) 403
AspLEI GCGC 3 cut(s) 65, 365, 411
AspS9I GGNCC 2 cut(s) 190, 401
AsuHPI GGTGA 3 cut(s) 130, 184, 316
AvaII GGWCC 2 cut(s) 190, 401
AxyI CCTNAGG 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 461
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 480
BauI CACGAG 1 cut(s) 341
Bbv12I GWGCWC 2 cut(s) 471, 480
BbvI GCAGC 2 cut(s) 107, 321
BccI CCATC 1 cut(s) 488
BciT130I CCWGG 2 cut(s) 92, 194
BcoDI GTCTC 3 cut(s) 54, 224, 380
BfoI RGCGCY 1 cut(s) 66
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 3 cut(s) 121, 124, 310
BlsI GCNGC 3 cut(s) 122, 125, 311
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 92, 194
Bme18I GGWCC 2 cut(s) 190, 401
BmgT120I GGNCC 2 cut(s) 190, 401
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 2 cut(s) 92, 194
BmsI GCATC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 455
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 319
Bse118I RCCGGY 1 cut(s) 403
Bse1I ACTGG 1 cut(s) 130
Bse21I CCTNAGG 1 cut(s) 462
BseBI CCWGG 2 cut(s) 92, 194
BseGI GGATG 2 cut(s) 21, 126
BseLI CCNNNNNNNGG 2 cut(s) 280, 319
BseMII CTCAG 2 cut(s) 444, 476
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 3 cut(s) 293, 296, 299
BseSI GKGCMC 1 cut(s) 461
BseXI GCAGC 2 cut(s) 107, 321
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 2 cut(s) 5, 227
BshTI ACCGGT 1 cut(s) 403
BsiHKAI GWGCWC 2 cut(s) 471, 480
BsiSI CCGG 2 cut(s) 399, 404
BslI CCNNNNNNNGG 2 cut(s) 280, 319
BsmAI GTCTC 3 cut(s) 54, 224, 380
BsmI GAATGC 2 cut(s) 188, 411
BsnI GGCC 2 cut(s) 5, 227
Bsp1286I GDGCHC 3 cut(s) 461, 471, 480
Bsp143I GATC 1 cut(s) 357
BspACI CCGC 1 cut(s) 124
BspANI GGCC 2 cut(s) 5, 227
BspCNI CTCAG 2 cut(s) 445, 475
BspFNI CGCG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 444
BspMI ACCTGC 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 403
BsrI ACTGG 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 403
BssMI GATC 1 cut(s) 357
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 92, 194
Bst4CI ACNGT 1 cut(s) 200
BstDEI CTNAG 2 cut(s) 453, 462
BstF5I GGATG 2 cut(s) 21, 126
BstFNI CGCG 1 cut(s) 365
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 3 cut(s) 65, 365, 411
BstKTI GATC 1 cut(s) 360
BstMAI GTCTC 3 cut(s) 54, 224, 380
BstMBI GATC 1 cut(s) 357
BstMWI GCNNNNNNNGC 2 cut(s) 69, 475
BstNI CCWGG 2 cut(s) 92, 194
BstSCI CCNGG 2 cut(s) 90, 192
BstSLI GKGCMC 1 cut(s) 461
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 2 cut(s) 107, 321
Bsu36I CCTNAGG 1 cut(s) 462
BsuRI GGCC 2 cut(s) 5, 227
BtsCI GGATG 2 cut(s) 21, 126
BtsIMutI CAGTG 1 cut(s) 205
BveI ACCTGC 1 cut(s) 454
CciI TCATGA 1 cut(s) 432
CfoI GCGC 3 cut(s) 65, 365, 411
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 2 cut(s) 190, 401
CpoI CGGWCCG 1 cut(s) 401
Csp6I GTAC 2 cut(s) 15, 250
CspAI ACCGGT 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CspI CGGWCCG 1 cut(s) 401
CviAII CATG 3 cut(s) 275, 433, 507
CviJI RGCY 9 cut(s) 5, 35, 120, 154, 227, 312, 339, 429, 478
CviKI_1 RGCY 9 cut(s) 5, 35, 120, 154, 227, 312, 339, 429, 478
CviQI GTAC 2 cut(s) 15, 250
DdeI CTNAG 2 cut(s) 453, 462
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 190, 401
Eco47III AGCGCT 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 15
Eco81I CCTNAGG 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 90, 192
EcoT38I GRGCYC 1 cut(s) 480
FaeI CATG 3 cut(s) 278, 436, 510
FaiI YATR 6 cut(s) 12, 209, 214, 276, 434, 508
FatI CATG 3 cut(s) 274, 432, 506
Fnu4HI GCNGC 3 cut(s) 121, 124, 310
FokI GGATG 2 cut(s) 8, 113
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 3 cut(s) 121, 124, 310
FspAI RTGCGCAY 1 cut(s) 410
FspI TGCGCA 1 cut(s) 410
GlaI GCGC 3 cut(s) 64, 364, 410
GluI GCNGC 3 cut(s) 121, 124, 310
GsuI CTGGAG 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 5, 227
HapII CCGG 2 cut(s) 399, 404
HhaI GCGC 3 cut(s) 65, 365, 411
Hin1II CATG 3 cut(s) 278, 436, 510
Hin6I GCGC 3 cut(s) 63, 363, 409
HinP1I GCGC 3 cut(s) 63, 363, 409
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 3 cut(s) 144, 393, 483
HpaII CCGG 2 cut(s) 399, 404
HphI GGTGA 3 cut(s) 130, 184, 316
Hpy188I TCNGA 1 cut(s) 482
Hpy188III TCNNGA 3 cut(s) 433, 452, 491
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 3 cut(s) 92, 240, 433
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 3 cut(s) 186, 327, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 475
HpyF3I CTNAG 2 cut(s) 453, 462
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 3 cut(s) 278, 436, 510
HspAI GCGC 3 cut(s) 63, 363, 409
Kzo9I GATC 1 cut(s) 357
LmnI GCTCC 2 cut(s) 454, 475
Lsp1109I GCAGC 2 cut(s) 107, 321
LweI GCATC 1 cut(s) 135
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 3 cut(s) 113, 269, 345
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 2 cut(s) 86, 448
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 3 cut(s) 461, 471, 480
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 255
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 1 cut(s) 159
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 2 cut(s) 399, 404
MspR9I CCNGG 2 cut(s) 92, 194
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 2 cut(s) 188, 411
MvaI CCWGG 2 cut(s) 92, 194
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 69, 475
NdeII GATC 1 cut(s) 357
NlaIII CATG 3 cut(s) 278, 436, 510
NlaIV GGNNCC 1 cut(s) 444
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 113, 269
NsbI TGCGCA 1 cut(s) 410
PagI TCATGA 1 cut(s) 432
PctI GAATGC 2 cut(s) 188, 411
PfeI GAWTC 2 cut(s) 144, 393
PinAI ACCGGT 1 cut(s) 403
PkrI GCNGC 3 cut(s) 122, 125, 311
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
PpuMI RGGWCCY 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 480
Psp1406I AACGTT 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 90, 192
PspGI CCWGG 2 cut(s) 90, 192
PspN4I GGNNCC 1 cut(s) 444
PspPI GGNCC 2 cut(s) 190, 401
PspPPI RGGWCCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 120
RsaI GTAC 2 cut(s) 16, 251
RsaNI GTAC 2 cut(s) 15, 250
Rsr2I CGGWCCG 1 cut(s) 401
RsrII CGGWCCG 1 cut(s) 401
SacI GAGCTC 1 cut(s) 480
SatI GCNGC 3 cut(s) 121, 124, 310
Sau3AI GATC 1 cut(s) 357
Sau96I GGNCC 2 cut(s) 190, 401
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 2 cut(s) 92, 194
SduI GDGCHC 3 cut(s) 461, 471, 480
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 2 cut(s) 190, 401
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 1 cut(s) 255
SsiI CCGC 1 cut(s) 124
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 2 cut(s) 90, 192
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 504
TaqI TCGA 2 cut(s) 57, 147
TasI AATT 1 cut(s) 255
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 2 cut(s) 144, 393
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 2 cut(s) 113, 269
TseI GCWGC 2 cut(s) 120, 309
Tsp45I GTSAC 2 cut(s) 113, 269
TspDTI ATGAA 3 cut(s) 124, 421, 449
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 190, 401
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.