Prupe.4G061100_v2.0.a1

Olee1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0009996
Physical Location & Seq
Forward (+)
2908106 .. 2909054
949 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G061100.1

Sequence Viewer

Length: 507 bp
ATGGCAACGAAGTCTAGTGGTATTGTCCTTGCCTCTGCCCTTTGCTTCTTGTCCCTCCTCGGCTTCGCTTACTGCGCCGATAACCTGAGTGTGGATGGCCTTGTTTACTGTGACAACTGCCGTATCCAGTTTATGACCAGGATCAGTGAGCCACTTCAAGGTGCAACGGTGAAGTTGGAATGCAGAGACCGGGAAGGCGGTACCGTAACCCTGAGCAGCGAGACGGACACTGATGAGCAAGGAAGGTACCAAATTCCGGTGGAAGGAGACCACGAAGAGGAGGTTTGTGAGGTGTTATTGGTGAAGAGCCCCAGAGATGACTGCAGCGAGGTTAGCACTGACTCTCATGCAAAGTTGAGCGCGAGGATCAGCCTCACAAACAACAATGGCATCGCCGGACCCCATCGCATTCCAAACCCTCTTGGTTTCCTCAAGACAGAACCCGACGCTAAGTGCGCTGAGGTCCTCAAGGAGCTTGGCCTAACCCCAGAAGGCGACCTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

169

Amino Acids

18.11

Weight (kDa)

4.59

Isoelectric Point (pI)

24.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29140 AT4G18596 AT4G18596 AT5G45880
fragaria_vesca FvH4_3g07791
malus_domestica MD05G1301300.v1.1 MD10G1280200.v1.1
prunus_persica Prupe.4G061100_v2.0.a1
pyrus_communis pycom05g27910
rosa_chinensis RchiOBHm_Chr5g0010771
rosa_laevigata RLG00000031778
rosa_multiflora Rmu_sc0000109.1_g000021
rosa_roxburghii Rroxscaffold_1G00065610
rosa_rugosa Rorug04G0452100
rosa_samantha Rh5AG084000 Rh5AG084400 Rh5BG079200 Rh5CG092000 Rh5DG079400
rosa_wichuraiana Rw0G000580 Rw0G022280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 200, 246
AccB1I GGYRCC 2 cut(s) 200, 246
AccII CGCG 1 cut(s) 362
AciI CCGC 1 cut(s) 198
AclWI GGATC 2 cut(s) 149, 374
AcsI RAATTY 1 cut(s) 252
AfaI GTAC 2 cut(s) 202, 248
AfiI CCNNNNNNNGG 5 cut(s) 91, 158, 256, 263, 277
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 1 cut(s) 475
AluI AGCT 1 cut(s) 475
Alw26I GTCTC 3 cut(s) 180, 215, 261
AlwI GGATC 2 cut(s) 149, 374
AoxI GGCC 2 cut(s) 97, 478
ApeKI GCWGC 2 cut(s) 216, 324
ApoI RAATTY 1 cut(s) 252
Asp718I GGTACC 2 cut(s) 200, 246
AspLEI GCGC 3 cut(s) 77, 362, 458
AspS9I GGNCC 2 cut(s) 398, 463
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 181, 313
AvaII GGWCC 2 cut(s) 398, 463
BaeI ACNNNNGTAYC 2 cut(s) 106, 139
BanI GGYRCC 2 cut(s) 200, 246
BanII GRGCYC 1 cut(s) 311
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 2 cut(s) 228, 336
BccI CCATC 2 cut(s) 89, 411
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 139
BciVI GTATCC 1 cut(s) 134
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 3 cut(s) 180, 215, 261
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 322
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 2 cut(s) 217, 325
BlsI GCNGC 2 cut(s) 218, 326
Bme1390I CCNGG 2 cut(s) 139, 191
Bme18I GGWCC 2 cut(s) 398, 463
BmgT120I GGNCC 2 cut(s) 398, 463
BmiI GGNNCC 3 cut(s) 202, 248, 400
BmrFI CCNGG 2 cut(s) 139, 191
BmsI GCATC 1 cut(s) 399
Bpu10I CCTNAGC 2 cut(s) 212, 459
BpuEI CTTGAG 2 cut(s) 416, 452
BpuMI CCSGG 1 cut(s) 191
BsaI GGTCTC 2 cut(s) 180, 261
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 158, 256, 263, 277
Bse1I ACTGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 5 cut(s) 91, 158, 256, 263, 277
BseMII CTCAG 3 cut(s) 77, 203, 450
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 2 cut(s) 47, 293
BseXI GCAGC 2 cut(s) 228, 336
Bsh1236I CGCG 1 cut(s) 362
BshFI GGCC 2 cut(s) 99, 480
BshNI GGYRCC 2 cut(s) 200, 246
BsiSI CCGG 3 cut(s) 190, 257, 396
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 5 cut(s) 91, 158, 256, 263, 277
BsmAI GTCTC 3 cut(s) 180, 215, 261
BsmBI CGTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 2 cut(s) 185, 408
BsnI GGCC 2 cut(s) 99, 480
Bso31I GGTCTC 2 cut(s) 180, 261
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 141, 366
BspACI CCGC 1 cut(s) 198
BspANI GGCC 2 cut(s) 99, 480
BspCNI CTCAG 3 cut(s) 78, 204, 451
BspFNI CGCG 1 cut(s) 362
BspLI GGNNCC 3 cut(s) 202, 248, 400
BspMAI CTGCAG 1 cut(s) 326
BspPI GGATC 2 cut(s) 149, 374
BspQI GCTCTTC 1 cut(s) 299
BspT107I GGYRCC 2 cut(s) 200, 246
BspTNI GGTCTC 2 cut(s) 180, 261
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 141, 366
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 3 cut(s) 110, 169, 205
Bst6I CTCTTC 2 cut(s) 270, 299
BstDEI CTNAG 4 cut(s) 86, 212, 450, 459
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 362
BstHHI GCGC 3 cut(s) 77, 362, 458
BstKTI GATC 2 cut(s) 144, 369
BstMAI GTCTC 3 cut(s) 180, 215, 261
BstMBI GATC 2 cut(s) 141, 366
BstMWI GCNNNNNNNGC 3 cut(s) 74, 333, 455
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 137, 189
BstSFI CTRYAG 1 cut(s) 322
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 228, 336
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 2 cut(s) 99, 480
BtgZI GCGATG 2 cut(s) 376, 389
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 3 cut(s) 151, 228, 336
CfoI GCGC 3 cut(s) 77, 362, 458
Cfr13I GGNCC 2 cut(s) 398, 463
CseI GACGC 1 cut(s) 455
Csp6I GTAC 2 cut(s) 201, 247
CviAII CATG 1 cut(s) 347
CviJI RGCY 7 cut(s) 63, 99, 151, 309, 372, 475, 480
CviKI_1 RGCY 7 cut(s) 63, 99, 151, 309, 372, 475, 480
CviQI GTAC 2 cut(s) 201, 247
DdeI CTNAG 4 cut(s) 86, 212, 450, 459
DpnI GATC 2 cut(s) 143, 368
DpnII GATC 2 cut(s) 141, 366
Eam1104I CTCTTC 2 cut(s) 270, 299
EarI CTCTTC 2 cut(s) 270, 299
Eco24I GRGCYC 1 cut(s) 311
Eco31I GGTCTC 2 cut(s) 180, 261
Eco47I GGWCC 2 cut(s) 398, 463
EcoO109I RGGNCCY 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 311
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 1 cut(s) 350
FaiI YATR 3 cut(s) 134, 348, 505
FalI AAGNNNNNCTT 1 cut(s) 483
FaqI GGGAC 1 cut(s) 37
FatI CATG 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 217, 325
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 2 cut(s) 217, 325
FspBI CTAG 1 cut(s) 15
GlaI GCGC 3 cut(s) 76, 361, 457
GluI GCNGC 2 cut(s) 217, 325
HaeIII GGCC 2 cut(s) 99, 480
HapII CCGG 3 cut(s) 190, 257, 396
HgaI GACGC 1 cut(s) 455
HhaI GCGC 3 cut(s) 77, 362, 458
Hin1II CATG 1 cut(s) 350
Hin6I GCGC 3 cut(s) 75, 360, 456
HinP1I GCGC 3 cut(s) 75, 360, 456
HinfI GANTC 1 cut(s) 341
HpaII CCGG 3 cut(s) 190, 257, 396
HphI GGTGA 2 cut(s) 181, 313
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 4 cut(s) 188, 237, 257, 485
HpyCH4III ACNGT 3 cut(s) 110, 169, 205
HpyCH4V TGCA 5 cut(s) 164, 183, 324, 350, 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 333, 455
HpyF3I CTNAG 4 cut(s) 86, 212, 450, 459
Hsp92II CATG 1 cut(s) 350
HspAI GCGC 3 cut(s) 75, 360, 456
KpnI GGTACC 2 cut(s) 204, 250
Kzo9I GATC 2 cut(s) 141, 366
LguI GCTCTTC 1 cut(s) 299
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 2 cut(s) 228, 336
LweI GCATC 1 cut(s) 399
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 110, 205
MalI GATC 2 cut(s) 143, 368
MboI GATC 2 cut(s) 141, 366
MboII GAAGA 2 cut(s) 287, 316
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 1 cut(s) 252
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 156
MspI CCGG 3 cut(s) 190, 257, 396
MspR9I CCNGG 2 cut(s) 139, 191
Mva1269I GAATGC 2 cut(s) 185, 408
MvaI CCWGG 1 cut(s) 139
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 3 cut(s) 74, 333, 455
NciI CCSGG 1 cut(s) 191
NdeII GATC 2 cut(s) 141, 366
NlaIII CATG 1 cut(s) 350
NlaIV GGNNCC 3 cut(s) 202, 248, 400
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 299
PctI GAATGC 2 cut(s) 185, 408
PkrI GCNGC 2 cut(s) 218, 326
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 463
Psp5II RGGWCCY 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 3 cut(s) 202, 248, 400
PspPI GGNCC 2 cut(s) 398, 463
PspPPI RGGWCCY 1 cut(s) 463
PstI CTGCAG 1 cut(s) 326
RsaI GTAC 2 cut(s) 202, 248
RsaNI GTAC 2 cut(s) 201, 247
SapI GCTCTTC 1 cut(s) 299
SatI GCNGC 2 cut(s) 217, 325
Sau3AI GATC 2 cut(s) 141, 366
Sau96I GGNCC 2 cut(s) 398, 463
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 139, 191
SduI GDGCHC 1 cut(s) 311
SetI ASST 9 cut(s) 87, 163, 248, 285, 294, 333, 465, 477, 501
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 2 cut(s) 398, 463
SmlI CTYRAG 2 cut(s) 431, 467
SmoI CTYRAG 2 cut(s) 431, 467
Sse9I AATT 1 cut(s) 252
SsiI CCGC 1 cut(s) 198
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 137, 189
TaaI ACNGT 3 cut(s) 110, 169, 205
TasI AATT 1 cut(s) 252
TscAI CASTG 3 cut(s) 151, 235, 343
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 2 cut(s) 216, 324
Tsp45I GTSAC 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 3 cut(s) 151, 235, 343
VpaK11BI GGWCC 2 cut(s) 398, 463
XapI RAATTY 1 cut(s) 252
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.