AT4G18596

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009996
Physical Location & Seq
Forward (+)
10238976 .. 10241975
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18596.2

Sequence Viewer

Length: 519 bp
ATGGCGTCCAAAGCCATCTTCTTCTTCTTTGTCTCTGCCGTGTGCCTGTCCTCTCTCGCCGGTGTGGCCATCGCTGATGCCGATGACTTTGACCGTTTCCAAATTCAGGGATCGGTTTATTGTGACACATGCCGTGTCCAATTCGTTACCCGTCTCAGCAAGTTCCTTGAAGGCGCGAAAGTGAAGCTAGAATGCAGGAGCAGAACAAACGGAACCGTAACATTGACAAAAGAAGCCGTAACGGACAAAACAGGGAGCTACAGAATGGAAGTGACCGGTGACCATGAGGAGGAAGTTTGCGAGCTTGTGCTCGTCGAATCACCAGACAGTGGTTGCAGTGACGTTAGCAAAGAGGCTTACCTACGTAACGCCGCTAAGATCAGCCTGACCGCGAATGACGGAATCGTCTCTCACGAGACACGTATCGTTAACCCTCTCGGTTTCATGGTTCAAACTCCGTCAGCTGAATGTCCCGCTGCTTTCAAGGAGCTCGGGATCGTTCCTGATGTCACCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

172

Amino Acids

18.68

Weight (kDa)

4.86

Isoelectric Point (pI)

21.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 81 - 166 7.2e-21 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29140 AT4G18596 AT4G18596 AT5G45880
fragaria_vesca FvH4_3g07791
malus_domestica MD05G1301300.v1.1 MD10G1280200.v1.1
prunus_persica Prupe.4G061100_v2.0.a1
pyrus_communis pycom05g27910
rosa_chinensis RchiOBHm_Chr5g0010771
rosa_laevigata RLG00000031778
rosa_multiflora Rmu_sc0000109.1_g000021
rosa_roxburghii Rroxscaffold_1G00065610
rosa_rugosa Rorug04G0452100
rosa_samantha Rh5AG084000 Rh5AG084400 Rh5BG079200 Rh5CG092000 Rh5DG079400
rosa_wichuraiana Rw0G000580 Rw0G022280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
AccB7I CCANNNNNTGG 1 cut(s) 329
AccII CGCG 2 cut(s) 176, 392
AciI CCGC 3 cut(s) 372, 390, 474
AclWI GGATC 2 cut(s) 118, 503
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 106, 289, 329
AflIII ACRYGT 1 cut(s) 419
AgeI ACCGGT 1 cut(s) 275
AgsI TTSAA 3 cut(s) 170, 452, 484
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 5 cut(s) 187, 258, 304, 464, 490
AluI AGCT 5 cut(s) 187, 258, 304, 464, 490
Alw21I GWGCWC 2 cut(s) 312, 492
Alw26I GTCTC 4 cut(s) 37, 158, 410, 412
AlwI GGATC 2 cut(s) 118, 503
Ama87I CYCGRG 1 cut(s) 491
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 1 cut(s) 102
AsiGI ACCGGT 1 cut(s) 275
AspLEI GCGC 1 cut(s) 176
AsuHPI GGTGA 3 cut(s) 290, 312, 502
AvaI CYCGRG 1 cut(s) 491
BalI TGGCCA 1 cut(s) 68
BanII GRGCYC 1 cut(s) 492
BauI CACGAG 1 cut(s) 413
Bbv12I GWGCWC 2 cut(s) 312, 492
BbvI GCAGC 1 cut(s) 463
BccI CCATC 2 cut(s) 23, 77
BceAI ACGGC 3 cut(s) 23, 117, 221
BcoDI GTCTC 4 cut(s) 37, 158, 410, 412
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 259
BglI GCCNNNNNGGC 1 cut(s) 65
BisI GCNGC 2 cut(s) 372, 477
BlsI GCNGC 2 cut(s) 373, 478
BmeT110I CYCGRG 1 cut(s) 491
BmiI GGNNCC 1 cut(s) 214
BmsI GCATC 1 cut(s) 67
BsaAI YACGTR 2 cut(s) 365, 422
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 289, 329
Bse118I RCCGGY 2 cut(s) 59, 275
BseLI CCNNNNNNNGG 3 cut(s) 106, 289, 329
BseMII CTCAG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 463
Bsh1236I CGCG 2 cut(s) 176, 392
BshFI GGCC 1 cut(s) 68
BshTI ACCGGT 1 cut(s) 275
BsiHKAI GWGCWC 2 cut(s) 312, 492
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 2 cut(s) 60, 276
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 3 cut(s) 106, 289, 329
BsmAI GTCTC 4 cut(s) 37, 158, 410, 412
BsmBI CGTCTC 2 cut(s) 158, 412
BsmFI GGGAC 1 cut(s) 456
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 491
Bsp1286I GDGCHC 2 cut(s) 312, 492
Bsp143I GATC 3 cut(s) 110, 378, 495
BspACI CCGC 3 cut(s) 372, 390, 474
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 168
BspFNI CGCG 2 cut(s) 176, 392
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 2 cut(s) 118, 503
BsrFI RCCGGY 2 cut(s) 59, 275
BssAI RCCGGY 2 cut(s) 59, 275
BssMI GATC 3 cut(s) 110, 378, 495
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 95, 217, 329
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 2 cut(s) 365, 422
BstC8I GCNNGC 1 cut(s) 302
BstDEI CTNAG 2 cut(s) 155, 375
BstEII GGTNACC 1 cut(s) 278
BstFNI CGCG 2 cut(s) 176, 392
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 3 cut(s) 113, 381, 498
BstMAI GTCTC 4 cut(s) 37, 158, 410, 412
BstMBI GATC 3 cut(s) 110, 378, 495
BstMWI GCNNNNNNNGC 2 cut(s) 11, 65
BstNSI RCATGY 1 cut(s) 132
BstPI GGTNACC 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 259
BstSNI TACGTA 1 cut(s) 365
BstUI CGCG 2 cut(s) 176, 392
BstV1I GCAGC 1 cut(s) 463
BsuRI GGCC 1 cut(s) 68
BtgZI GCGATG 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 334, 343
Cac8I GCNNGC 1 cut(s) 302
CfoI GCGC 1 cut(s) 176
Cfr10I RCCGGY 2 cut(s) 59, 275
CspAI ACCGGT 1 cut(s) 275
CviAII CATG 3 cut(s) 129, 284, 445
DdeI CTNAG 2 cut(s) 155, 375
DpnI GATC 3 cut(s) 112, 380, 497
DpnII GATC 3 cut(s) 110, 378, 495
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
EaeI YGGCCR 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 490
Eco105I TACGTA 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 492
Eco53kI GAGCTC 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 491
Eco91I GGTNACC 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 490
EcoO65I GGTNACC 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 492
Esp3I CGTCTC 2 cut(s) 158, 412
FaeI CATG 3 cut(s) 132, 287, 448
FaiI YATR 3 cut(s) 130, 285, 446
FaqI GGGAC 1 cut(s) 456
FatI CATG 3 cut(s) 128, 283, 444
FauI CCCGC 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 372, 477
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 2 cut(s) 372, 477
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 175
GluI GCNGC 2 cut(s) 372, 477
HaeIII GGCC 1 cut(s) 68
HapII CCGG 2 cut(s) 60, 276
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 132, 287, 448
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 2 cut(s) 317, 402
HpaI GTTAAC 1 cut(s) 430
HpaII CCGG 2 cut(s) 60, 276
HphI GGTGA 3 cut(s) 290, 312, 502
Hpy166II GTNNAC 1 cut(s) 430
Hpy188III TCNNGA 3 cut(s) 413, 493, 503
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 3 cut(s) 95, 217, 329
HpyCH4IV ACGT 3 cut(s) 342, 364, 421
HpyCH4V TGCA 2 cut(s) 195, 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 65
HpyF3I CTNAG 2 cut(s) 155, 375
HpySE526I ACGT 3 cut(s) 342, 364, 421
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 132, 287, 448
HspAI GCGC 1 cut(s) 174
KspAI GTTAAC 1 cut(s) 430
Kzo9I GATC 3 cut(s) 110, 378, 495
LmnI GCTCC 3 cut(s) 198, 255, 487
LpnPI CCDG 8 cut(s) 59, 73, 92, 181, 237, 289, 336, 398
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 188
MaeII ACGT 3 cut(s) 342, 364, 421
MaeIII GTNAC 9 cut(s) 122, 145, 217, 238, 271, 278, 338, 365, 508
MalI GATC 3 cut(s) 112, 380, 497
MboI GATC 3 cut(s) 110, 378, 495
MboII GAAGA 3 cut(s) 10, 13, 16
MhlI GDGCHC 2 cut(s) 312, 492
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 2 cut(s) 102, 140
MluNI TGGCCA 1 cut(s) 68
MnlI CCTC 5 cut(s) 61, 280, 283, 346, 444
Mox20I TGGCCA 1 cut(s) 68
MscI TGGCCA 1 cut(s) 68
MseI TTAA 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 68
MspA1I CMGCKG 2 cut(s) 464, 476
MspI CCGG 2 cut(s) 60, 276
Mva1269I GAATGC 1 cut(s) 197
MvnI CGCG 2 cut(s) 176, 392
MwoI GCNNNNNNNGC 2 cut(s) 11, 65
NdeII GATC 3 cut(s) 110, 378, 495
NlaIII CATG 3 cut(s) 132, 287, 448
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 5 cut(s) 122, 271, 278, 338, 508
NspI RCATGY 1 cut(s) 132
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 411
PctI GAATGC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 317, 402
PflMI CCANNNNNTGG 1 cut(s) 329
PinAI ACCGGT 1 cut(s) 275
PkrI GCNGC 2 cut(s) 373, 478
Ppu21I YACGTR 2 cut(s) 365, 422
Psp124BI GAGCTC 1 cut(s) 492
PspEI GGTNACC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 2 cut(s) 372, 477
Sau3AI GATC 3 cut(s) 110, 378, 495
SduI GDGCHC 2 cut(s) 312, 492
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 259
SgrAI CRCCGGYG 1 cut(s) 59
SnaBI TACGTA 1 cut(s) 365
Sse9I AATT 2 cut(s) 102, 140
SsiI CCGC 3 cut(s) 372, 390, 474
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 492
TaaI ACNGT 3 cut(s) 95, 217, 329
TaiI ACGT 3 cut(s) 345, 367, 424
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 102, 140
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 317, 402
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 2 cut(s) 334, 343
TseFI GTSAC 5 cut(s) 122, 271, 278, 338, 508
TseI GCWGC 1 cut(s) 476
Tsp45I GTSAC 5 cut(s) 122, 271, 278, 338, 508
TspDTI ATGAA 1 cut(s) 433
TspGWI ACGGA 4 cut(s) 225, 257, 414, 447
TspRI CASTG 2 cut(s) 334, 343
Van91I CCANNNNNTGG 1 cut(s) 329
XapI RAATTY 1 cut(s) 102
XceI RCATGY 1 cut(s) 132
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.