AT5G45880

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009996
Physical Location & Seq
Reverse (-)
18609628 .. 18611166
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45880.1

Sequence Viewer

Length: 525 bp
ATGGCTTCCAAAGCTATCTTCTTCTCTTTCTTTGTCGTCTCCGCCGTGTGTTTGTCTTCTCTGGCAGGTTTCGCCGCCGCTGATGCTGACGACTTCGATCGTTTCCAGATTCAAGGATCAGTTTACTGTGACACTTGCCGTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAGGCGCGAAAGTGAAGTTGGAGTGCAGGAGCAGAACAAACGGAACCATAACATTGACCAAAGAAGCTGTTACCGACAAAACAGGAAGCTACAAAATGGAAGTAACCGGTGACCACGAGGAAGAAGTTTGCGAGCTTGTTTTGGTCCAATCACCAGACAGTGGTTGCAGTGATGTCAGCACAGAGGCTTACTTACGTAACGCCGCTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCCCACGAGACACGTATTGTTAACCCTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGTCCTGCTGCTTTCAAGGAGCTTGGTATTGTCCCTGACGTAACATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

174

Amino Acids

18.84

Weight (kDa)

4.81

Isoelectric Point (pI)

23.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 37 - 122 3.7e-21 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29140 AT4G18596 AT4G18596 AT5G45880
fragaria_vesca FvH4_3g07791
malus_domestica MD05G1301300.v1.1 MD10G1280200.v1.1
prunus_persica Prupe.4G061100_v2.0.a1
pyrus_communis pycom05g27910
rosa_chinensis RchiOBHm_Chr5g0010771
rosa_laevigata RLG00000031778
rosa_multiflora Rmu_sc0000109.1_g000021
rosa_roxburghii Rroxscaffold_1G00065610
rosa_rugosa Rorug04G0452100
rosa_samantha Rh5AG084000 Rh5AG084400 Rh5BG079200 Rh5CG092000 Rh5DG079400
rosa_wichuraiana Rw0G000580 Rw0G022280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 335
AccII CGCG 1 cut(s) 182
AciI CCGC 4 cut(s) 42, 75, 78, 378
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 335
AflIII ACRYGT 1 cut(s) 425
AgeI ACCGGT 1 cut(s) 281
AgsI TTSAA 2 cut(s) 113, 490
AjuI GAANNNNNNNTTGG 3 cut(s) 34, 176, 208
AluBI AGCT 5 cut(s) 14, 242, 264, 310, 496
AluI AGCT 5 cut(s) 14, 242, 264, 310, 496
Alw26I GTCTC 4 cut(s) 43, 164, 416, 418
AlwI GGATC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 482
ApoI RAATTY 1 cut(s) 167
AsiGI ACCGGT 1 cut(s) 281
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 296, 318
AvaII GGWCC 1 cut(s) 319
BauI CACGAG 2 cut(s) 290, 419
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 469
BceAI ACGGC 3 cut(s) 29, 123, 411
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BcoDI GTCTC 4 cut(s) 43, 164, 416, 418
BfuAI ACCTGC 1 cut(s) 56
BisI GCNGC 4 cut(s) 75, 78, 378, 483
BlsI GCNGC 4 cut(s) 76, 79, 379, 484
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 220
BmsI GCATC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 48
BsaAI YACGTR 2 cut(s) 371, 428
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse118I RCCGGY 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 469
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 100
BshTI ACCGGT 1 cut(s) 281
BsiEI CGRYCG 1 cut(s) 100
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 4 cut(s) 43, 164, 416, 418
BsmBI CGTCTC 3 cut(s) 43, 164, 418
BsmFI GGGAC 1 cut(s) 491
Bsp143I GATC 3 cut(s) 97, 116, 384
BspACI CCGC 4 cut(s) 42, 75, 78, 378
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssMI GATC 3 cut(s) 97, 116, 384
BssSI CACGAG 2 cut(s) 290, 419
Bst2BI CACGAG 2 cut(s) 290, 419
Bst4CI ACNGT 2 cut(s) 128, 335
BstBAI YACGTR 2 cut(s) 371, 428
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 2 cut(s) 161, 381
BstEII GGTNACC 1 cut(s) 284
BstFNI CGCG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 3 cut(s) 100, 119, 387
BstMAI GTCTC 4 cut(s) 43, 164, 416, 418
BstMBI GATC 3 cut(s) 97, 116, 384
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 11, 71, 83
BstPI GGTNACC 1 cut(s) 284
BstSNI TACGTA 1 cut(s) 371
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 340, 349
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 308
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 319
CspAI ACCGGT 1 cut(s) 281
CviAII CATG 1 cut(s) 451
CviJI RGCY 8 cut(s) 5, 14, 242, 264, 310, 362, 470, 496
CviKI_1 RGCY 8 cut(s) 5, 14, 242, 264, 310, 362, 470, 496
DdeI CTNAG 2 cut(s) 161, 381
DpnI GATC 3 cut(s) 99, 118, 386
DpnII GATC 3 cut(s) 97, 116, 384
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
EciI GGCGGA 1 cut(s) 31
Eco105I TACGTA 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 319
Eco91I GGTNACC 1 cut(s) 284
EcoO65I GGTNACC 1 cut(s) 284
Esp3I CGTCTC 3 cut(s) 43, 164, 418
FaeI CATG 1 cut(s) 454
FaiI YATR 2 cut(s) 224, 452
FaqI GGGAC 1 cut(s) 491
FatI CATG 1 cut(s) 450
Fnu4HI GCNGC 4 cut(s) 75, 78, 378, 483
Fsp4HI GCNGC 4 cut(s) 75, 78, 378, 483
GlaI GCGC 1 cut(s) 181
GluI GCNGC 4 cut(s) 75, 78, 378, 483
HapII CCGG 1 cut(s) 282
HhaI GCGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 454
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 3 cut(s) 109, 408, 460
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 1 cut(s) 282
HphI GGTGA 2 cut(s) 296, 318
Hpy166II GTNNAC 2 cut(s) 124, 436
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 2 cut(s) 124, 436
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 128, 335
HpyCH4IV ACGT 3 cut(s) 370, 427, 513
HpyCH4V TGCA 2 cut(s) 201, 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 71, 83
HpyF3I CTNAG 2 cut(s) 161, 381
HpySE526I ACGT 3 cut(s) 370, 427, 513
Hsp92II CATG 1 cut(s) 454
HspAI GCGC 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 436
Kzo9I GATC 3 cut(s) 97, 116, 384
LmnI GCTCC 2 cut(s) 204, 493
LpnPI CCDG 8 cut(s) 47, 51, 119, 187, 243, 295, 342, 492
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 1 cut(s) 73
MaeII ACGT 3 cut(s) 370, 427, 513
MaeIII GTNAC 7 cut(s) 128, 151, 244, 277, 284, 371, 514
MalI GATC 3 cut(s) 99, 118, 386
MboI GATC 3 cut(s) 97, 116, 384
MboII GAAGA 4 cut(s) 10, 13, 48, 308
MluCI AATT 2 cut(s) 146, 167
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 4 cut(s) 182, 286, 352, 450
MseI TTAA 2 cut(s) 392, 435
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 11, 71, 83
NdeII GATC 3 cut(s) 97, 116, 384
NlaIII CATG 1 cut(s) 454
NlaIV GGNNCC 1 cut(s) 220
NmuCI GTSAC 2 cut(s) 128, 284
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 417
PfeI GAWTC 2 cut(s) 109, 408
PflMI CCANNNNNTGG 1 cut(s) 335
PinAI ACCGGT 1 cut(s) 281
PkrI GCNGC 4 cut(s) 76, 79, 379, 484
Ple19I CGATCG 1 cut(s) 100
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Ppu21I YACGTR 2 cut(s) 371, 428
PspEI GGTNACC 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 319
PvuI CGATCG 1 cut(s) 100
SaqAI TTAA 2 cut(s) 392, 435
SatI GCNGC 4 cut(s) 75, 78, 378, 483
Sau3AI GATC 3 cut(s) 97, 116, 384
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 1 cut(s) 454
SetI ASST 9 cut(s) 16, 70, 244, 266, 312, 373, 430, 498, 516
SfaNI GCATC 1 cut(s) 73
SinI GGWCC 1 cut(s) 319
SnaBI TACGTA 1 cut(s) 371
Sse9I AATT 2 cut(s) 146, 167
SsiI CCGC 4 cut(s) 42, 75, 78, 378
TaaI ACNGT 2 cut(s) 128, 335
TaiI ACGT 3 cut(s) 373, 430, 516
TaqI TCGA 2 cut(s) 96, 174
TasI AATT 2 cut(s) 146, 167
TauI GCSGC 3 cut(s) 77, 80, 380
TfiI GAWTC 2 cut(s) 109, 408
Tru1I TTAA 2 cut(s) 392, 435
Tru9I TTAA 2 cut(s) 392, 435
TscAI CASTG 2 cut(s) 340, 349
TseFI GTSAC 2 cut(s) 128, 284
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 2 cut(s) 128, 284
TspDTI ATGAA 1 cut(s) 439
TspGWI ACGGA 2 cut(s) 231, 420
TspRI CASTG 2 cut(s) 340, 349
Van91I CCANNNNNTGG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.