AT1G30190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014072
Physical Location & Seq
Forward (+)
10618893 .. 10620067
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30190.1

Sequence Viewer

Length: 837 bp
ATGACAGAAATGCCCTCGTACATGATCGAGAACCCAAAGTTCGAGCCAAAGAAACGACGTTATTACTCTTCTTCGATGCTTACCATCTTCTTACCGATCTTCACATACATTATGATCTTTCACGTTTTCGAAGTATCACTATCTTCGGTCTTTAAAGACACAAAGGTCTTGTTCTTCATCTCCAATACTCTCATCCTCATAATAGCCGCCGATTATGGTTCCTTCTCTGATAAAGAGAGTCAAGACTTTTACGGTGAATACACTGTCGCAGCGGCAACGATGCGAAACCGAGCTGATAACTACTCTCCGATTCCCGTCTTGACATACCGAGAAAACACTAAAGATGGAGAAATCAAGAACCCTAAAGATGTCGAATTCAGGAACCCTGAAGAAGAAGACGAACCGATGGTGAAAGATATCATTTGCGTTTCTCCTCCCGAGAAAATAGTACGAGTGGTGAGTGAGAAGAAACAGAGAGATGATGTAGCTATGGAAGAATACAAACCAGTTACAGAACAAACTCTTGCTAGCGAAGAAGCTTGCAACACAAGAAACCATGTGAACCCTAATAAACCGTACGGGCGAAGTAAATCAGATAAGCCACGGAGAAAGAGGCTCAGCGTAGATACAGAGACGACCAAACGTAAAAGTTATGGTCGAAAGAAATCAGATTGCTCGAGATGGATGGTTATTCCGGAGAAGTGGGAATATGTTAAAGAAGAATCTGAAGAGTTTTCAAAGTTGTCCAACGAGGAGTTGAACAAACGAGTCGAAGAATTCATCCAACGGTTCAATAGACAGATCAGATCACAATCACCGCGAGTTTCGTCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

278

Amino Acids

32.71

Weight (kDa)

8.22

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30190 AT2G34610
fragaria_vesca FvH4_3g05300 FvH4_6g37202
malus_domestica MD05G1281700.v1.1 MD10G1260500.v1.1
prunus_persica Prupe.4G082900_v2.0.a1
pyrus_communis pycom10g21640
rosa_laevigata RLG00000032108
rosa_multiflora Rmu_ssc0000422.1_g000035
rosa_roxburghii Rroxscaffold_1G00062150
rosa_rugosa Rorug05G0018200
rosa_samantha Rh5AG113000 Rh5BG109700 Rh5CG121500 Rh5DG108800
rosa_wichuraiana Rw5G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AccI GTMKAC 1 cut(s) 830
AccII CGCG 1 cut(s) 820
AccIII TCCGGA 1 cut(s) 694
AciI CCGC 3 cut(s) 207, 272, 818
AcsI RAATTY 2 cut(s) 374, 776
AcuI CTGAAG 2 cut(s) 408, 747
AfaI GTAC 3 cut(s) 20, 450, 578
AgsI TTSAA 3 cut(s) 738, 760, 793
AluBI AGCT 3 cut(s) 293, 488, 539
AluI AGCT 3 cut(s) 293, 488, 539
Alw26I GTCTC 1 cut(s) 626
Ama87I CYCGRG 2 cut(s) 437, 676
Aor13HI TCCGGA 1 cut(s) 694
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 2 cut(s) 374, 776
AsuHPI GGTGA 4 cut(s) 266, 421, 469, 807
AsuII TTCGAA 1 cut(s) 129
AsuNHI GCTAGC 1 cut(s) 527
AvaI CYCGRG 2 cut(s) 437, 676
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 281
BccI CCATC 5 cut(s) 92, 338, 400, 675, 679
BcoDI GTCTC 1 cut(s) 626
BfaI CTAG 1 cut(s) 528
BisI GCNGC 3 cut(s) 207, 270, 273
BlpI GCTNAGC 1 cut(s) 617
BlsI GCNGC 3 cut(s) 208, 271, 274
BmeT110I CYCGRG 2 cut(s) 437, 676
BmiI GGNNCC 2 cut(s) 220, 383
BmsI GCATC 2 cut(s) 66, 270
BmtI GCTAGC 1 cut(s) 531
BpiI GAAGAC 1 cut(s) 402
Bpu1102I GCTNAGC 1 cut(s) 617
Bpu14I TTCGAA 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 811
BsaJI CCNNGG 1 cut(s) 602
BsaWI WCCGGW 1 cut(s) 694
Bse1I ACTGG 1 cut(s) 506
Bse8I GATNNNNATC 1 cut(s) 811
BseAI TCCGGA 1 cut(s) 694
BseDI CCNNGG 1 cut(s) 602
BseGI GGATG 3 cut(s) 192, 690, 780
BseJI GATNNNNATC 1 cut(s) 811
BseMII CTCAG 1 cut(s) 631
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 2 cut(s) 423, 767
BseXI GCAGC 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 820
BsiHKCI CYCGRG 2 cut(s) 437, 676
BsiSI CCGG 1 cut(s) 695
BsiWI CGTACG 1 cut(s) 576
BsmAI GTCTC 1 cut(s) 626
BsmBI CGTCTC 1 cut(s) 626
BsoBI CYCGRG 2 cut(s) 437, 676
Bsp119I TTCGAA 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 694
Bsp143I GATC 5 cut(s) 24, 96, 114, 801, 806
Bsp1720I GCTNAGC 1 cut(s) 617
BspACI CCGC 3 cut(s) 207, 272, 818
BspCNI CTCAG 1 cut(s) 630
BspEI TCCGGA 1 cut(s) 694
BspFNI CGCG 1 cut(s) 820
BspLI GGNNCC 2 cut(s) 220, 383
BspOI GCTAGC 1 cut(s) 531
BspT104I TTCGAA 1 cut(s) 129
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 602
BssMI GATC 5 cut(s) 24, 96, 114, 801, 806
Bst4CI ACNGT 4 cut(s) 254, 265, 576, 789
Bst6I CTCTTC 2 cut(s) 73, 723
BstBI TTCGAA 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 529, 541
BstDEI CTNAG 1 cut(s) 617
BstDSI CCRYGG 1 cut(s) 602
BstF5I GGATG 3 cut(s) 192, 690, 780
BstFNI CGCG 1 cut(s) 820
BstKTI GATC 5 cut(s) 27, 99, 117, 804, 809
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 5 cut(s) 24, 96, 114, 801, 806
BstUI CGCG 1 cut(s) 820
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 402
BtgI CCRYGG 1 cut(s) 602
BtsCI GGATG 3 cut(s) 192, 690, 780
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 2 cut(s) 529, 541
Csp6I GTAC 3 cut(s) 19, 449, 577
CviAII CATG 2 cut(s) 22, 557
CviJI RGCY 7 cut(s) 46, 206, 293, 488, 539, 601, 616
CviKI_1 RGCY 7 cut(s) 46, 206, 293, 488, 539, 601, 616
CviQI GTAC 3 cut(s) 19, 449, 577
DdeI CTNAG 1 cut(s) 617
DpnI GATC 5 cut(s) 26, 98, 116, 803, 808
DpnII GATC 5 cut(s) 24, 96, 114, 801, 806
DraI TTTAAA 1 cut(s) 154
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
Eam1104I CTCTTC 2 cut(s) 73, 723
EarI CTCTTC 2 cut(s) 73, 723
Eco32I GATATC 1 cut(s) 418
Eco57I CTGAAG 2 cut(s) 408, 747
Eco88I CYCGRG 2 cut(s) 437, 676
EcoRI GAATTC 2 cut(s) 374, 776
EcoRV GATATC 1 cut(s) 418
Esp3I CGTCTC 1 cut(s) 626
FaeI CATG 2 cut(s) 25, 560
FatI CATG 2 cut(s) 21, 556
FblI GTMKAC 1 cut(s) 830
Fnu4HI GCNGC 3 cut(s) 207, 270, 273
FokI GGATG 3 cut(s) 179, 697, 767
Fsp4HI GCNGC 3 cut(s) 207, 270, 273
FspBI CTAG 1 cut(s) 528
GluI GCNGC 3 cut(s) 207, 270, 273
HapII CCGG 1 cut(s) 695
Hin1II CATG 2 cut(s) 25, 560
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 4 cut(s) 238, 310, 722, 768
HpaII CCGG 1 cut(s) 695
HphI GGTGA 4 cut(s) 266, 421, 469, 807
Hpy166II GTNNAC 2 cut(s) 562, 831
Hpy188I TCNGA 6 cut(s) 229, 309, 595, 670, 727, 806
Hpy188III TCNNGA 8 cut(s) 28, 242, 319, 355, 379, 437, 678, 695
Hpy8I GTNNAC 2 cut(s) 562, 831
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 4 cut(s) 254, 265, 576, 789
HpyCH4IV ACGT 3 cut(s) 58, 123, 643
HpyCH4V TGCA 1 cut(s) 543
HpyF3I CTNAG 1 cut(s) 617
HpySE526I ACGT 3 cut(s) 58, 123, 643
Hsp92II CATG 2 cut(s) 25, 560
Kpn2I TCCGGA 1 cut(s) 694
Kzo9I GATC 5 cut(s) 24, 96, 114, 801, 806
LpnPI CCDG 4 cut(s) 364, 399, 519, 708
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 2 cut(s) 66, 270
MaeI CTAG 1 cut(s) 528
MaeII ACGT 3 cut(s) 58, 123, 643
MaeIII GTNAC 1 cut(s) 508
MalI GATC 5 cut(s) 26, 98, 116, 803, 808
MboI GATC 5 cut(s) 24, 96, 114, 801, 806
MluCI AATT 2 cut(s) 374, 776
MlyI GAGTC 2 cut(s) 247, 777
MmeI TCCRAC 2 cut(s) 771, 808
MnlI CCTC 5 cut(s) 25, 206, 444, 606, 745
MroI TCCGGA 1 cut(s) 694
MseI TTAA 2 cut(s) 153, 714
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 1 cut(s) 695
MvnI CGCG 1 cut(s) 820
NdeII GATC 5 cut(s) 24, 96, 114, 801, 806
NheI GCTAGC 1 cut(s) 527
NlaIII CATG 2 cut(s) 25, 560
NlaIV GGNNCC 2 cut(s) 220, 383
NspV TTCGAA 1 cut(s) 129
PaeR7I CTCGAG 1 cut(s) 676
PfeI GAWTC 2 cut(s) 310, 722
Pfl23II CGTACG 1 cut(s) 576
PkrI GCNGC 3 cut(s) 208, 271, 274
PleI GAGTC 2 cut(s) 246, 776
PpsI GAGTC 2 cut(s) 246, 776
PspLI CGTACG 1 cut(s) 576
PspN4I GGNNCC 2 cut(s) 220, 383
RsaI GTAC 3 cut(s) 20, 450, 578
RsaNI GTAC 3 cut(s) 19, 449, 577
SaqAI TTAA 2 cut(s) 153, 714
SatI GCNGC 3 cut(s) 207, 270, 273
Sau3AI GATC 5 cut(s) 24, 96, 114, 801, 806
SchI GAGTC 2 cut(s) 247, 777
SetI ASST 7 cut(s) 61, 126, 168, 295, 490, 541, 646
SfaNI GCATC 2 cut(s) 66, 270
Sfr274I CTCGAG 1 cut(s) 676
SfuI TTCGAA 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 676
SmlI CTYRAG 1 cut(s) 676
SmoI CTYRAG 1 cut(s) 676
Sse9I AATT 2 cut(s) 374, 776
SsiI CCGC 3 cut(s) 207, 272, 818
SspMI CTAG 1 cut(s) 528
TaaI ACNGT 4 cut(s) 254, 265, 576, 789
TaiI ACGT 3 cut(s) 61, 126, 646
TaqI TCGA 8 cut(s) 27, 42, 74, 129, 372, 658, 677, 771
TaqII GACCGA 1 cut(s) 136
TasI AATT 2 cut(s) 374, 776
TauI GCSGC 2 cut(s) 209, 275
TfiI GAWTC 2 cut(s) 310, 722
Tru1I TTAA 2 cut(s) 153, 714
Tru9I TTAA 2 cut(s) 153, 714
TscAI CASTG 1 cut(s) 268
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 166, 769
TspGWI ACGGA 1 cut(s) 619
TspRI CASTG 1 cut(s) 268
XapI RAATTY 2 cut(s) 374, 776
XhoI CTCGAG 1 cut(s) 676
XmiI GTMKAC 1 cut(s) 830
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.