Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014072

Physical Location & Seq

Genomic Coordinates Reverse (-)

29319276 .. 29320362

Gene Structure 1087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37202.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCCTCTATAAACTTATTCCGACATCCTTGATTGCCTTCTTCTTCTCTATAGTAATGTACACTTCCATCTTCTATATTTTCAACCTCTCTCCCTCCACTCTCTTCTACCAAAACTTGGGGTTGTTTGCGATGTTAAACACCCTGTTGTTTATCATTACAGTCGACTACTCTTCTTATTCCAAAGACAAAAAGCACGTCCAAAATAATCACCAAGAAGTGTATATGATGGATATGCATGCTGAAACTACTTCCCCATTTGTTTCGGAATTCCCTCGTGAAGTAATCAAGCACACCATTACTGATCACCAGGTTGCGGATCAAAATATAGAAAACCGAGAAAACAGTCCAACTGTGCTTGAAGACGAGCATGAAGAAAACCCTAGTGTTGATGAAATTGTTGTCCAAGAAAAGAGGAAAGTTGAGGTACAGTCAAAAGGTGGTAACACAAACATATGTATTCAAGCAGAAGCTTACAAGTCGGAGGTGATGAAAAGAATGGCTATCGACGAGAGCAAGAGCAATATTATGAGGTTGGAGACAGTACTGGAGAAGCACGAAGAAACTCAAGTACGTACTCCGAAAAAAAACGAATTGTCAGATGAAGAACTGGGTAGGAGAATTCAACTTTTAAGGAACAAATCAGGCATACCCTGGAAGAAGATCGAGGTAACGAATTCCCAACCATGTCAGAAGAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

235

Amino Acids

27.21

Weight (kDa)

5.85

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30190 AT2G34610
fragaria_vesca	FvH4_3g05300 FvH4_6g37202
malus_domestica	MD05G1281700.v1.1 MD10G1260500.v1.1
prunus_persica	Prupe.4G082900_v2.0.a1
pyrus_communis	pycom10g21640
rosa_laevigata	RLG00000032108
rosa_multiflora	Rmu_ssc0000422.1_g000035
rosa_roxburghii	Rroxscaffold_1G00062150
rosa_rugosa	Rorug05G0018200
rosa_samantha	Rh5AG113000 Rh5BG109700 Rh5CG121500 Rh5DG108800
rosa_wichuraiana	Rw5G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	3 cut(s)	269, 621, 676
AfaI	GTAC	5 cut(s)	62, 429, 546, 573, 577
AfiI	CCNNNNNNNGG	2 cut(s)	118, 316
AgsI	TTSAA	4 cut(s)	85, 362, 464, 626
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	309, 653
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	3 cut(s)	269, 621, 676
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	203, 299, 499
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	369
BccI	CCATC	2 cut(s)	77, 223
BciT130I	CCWGG	2 cut(s)	311, 655
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	51
BmcAI	AGTACT	1 cut(s)	546
Bme1390I	CCNGG	2 cut(s)	311, 655
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	311, 655
BmrI	ACTGGG	1 cut(s)	620
BmuI	ACTGGG	1 cut(s)	620
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 316
Bse1I	ACTGG	2 cut(s)	552, 615
BseBI	CCWGG	2 cut(s)	311, 655
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	118, 316
BseNI	ACTGG	2 cut(s)	552, 615
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	118, 316
BsmAI	GTCTC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	304, 319, 663
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	327
BsrGI	TGTACA	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	552, 615
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	3 cut(s)	304, 319, 663
BssSI	CACGAG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	311, 655
Bst4CI	ACNGT	5 cut(s)	163, 347, 355, 432, 544
Bst6I	CTCTTC	2 cut(s)	110, 178
BstAUI	TGTACA	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	26
BstKTI	GATC	3 cut(s)	307, 322, 666
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	3 cut(s)	304, 319, 663
BstNI	CCWGG	2 cut(s)	311, 655
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	309, 653
BstSFI	CTRYAG	1 cut(s)	51
BstSNI	TACGTA	1 cut(s)	575
BstV2I	GAAGAC	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	309
Csp6I	GTAC	5 cut(s)	61, 428, 545, 572, 576
CviAII	CATG	3 cut(s)	239, 371, 687
CviJI	RGCY	3 cut(s)	5, 473, 503
CviKI_1	RGCY	3 cut(s)	5, 473, 503
CviQI	GTAC	5 cut(s)	61, 428, 545, 572, 576
DpnI	GATC	3 cut(s)	306, 321, 665
DpnII	GATC	3 cut(s)	304, 319, 663
Eam1104I	CTCTTC	2 cut(s)	110, 178
EarI	CTCTTC	2 cut(s)	110, 178
Eco105I	TACGTA	1 cut(s)	575
EcoRI	GAATTC	3 cut(s)	269, 621, 676
EcoRII	CCWGG	2 cut(s)	309, 653
EcoT22I	ATGCAT	1 cut(s)	240
FaeI	CATG	3 cut(s)	242, 374, 690
FatI	CATG	3 cut(s)	238, 370, 686
FauNDI	CATATG	1 cut(s)	455
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	1 cut(s)	13
FspBI	CTAG	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	569
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	242, 374, 690
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	471
HphI	GGTGA	3 cut(s)	203, 299, 499
Hpy166II	GTNNAC	2 cut(s)	63, 166
Hpy188I	TCNGA	6 cut(s)	24, 268, 484, 582, 601, 693
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	2 cut(s)	63, 166
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	5 cut(s)	163, 347, 355, 432, 544
HpyCH4IV	ACGT	2 cut(s)	198, 574
HpyCH4V	TGCA	1 cut(s)	238
HpySE526I	ACGT	2 cut(s)	198, 574
Hsp92II	CATG	3 cut(s)	242, 374, 690
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	304, 319, 663
LpnPI	CCDG	8 cut(s)	158, 296, 323, 533, 596, 630, 640, 667
MabI	ACCWGGT	1 cut(s)	309
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	2 cut(s)	198, 574
MaeIII	GTNAC	2 cut(s)	443, 670
MalI	GATC	3 cut(s)	306, 321, 665
MboI	GATC	3 cut(s)	304, 319, 663
MluCI	AATT	5 cut(s)	269, 396, 593, 621, 676
MmeI	TCCRAC	4 cut(s)	47, 374, 462, 516
MnlI	CCTC	9 cut(s)	17, 98, 106, 285, 408, 418, 478, 525, 661
Mph1103I	ATGCAT	1 cut(s)	240
MseI	TTAA	2 cut(s)	137, 632
MspR9I	CCNGG	2 cut(s)	311, 655
MvaI	CCWGG	2 cut(s)	311, 655
NdeI	CATATG	1 cut(s)	455
NdeII	GATC	3 cut(s)	304, 319, 663
NlaIII	CATG	3 cut(s)	242, 374, 690
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	309, 653
PspGI	CCWGG	2 cut(s)	309, 653
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	5 cut(s)	62, 429, 546, 573, 577
RsaNI	GTAC	5 cut(s)	61, 428, 545, 572, 576
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	137, 632
Sau3AI	GATC	3 cut(s)	304, 319, 663
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	546
ScrFI	CCNGG	2 cut(s)	311, 655
SexAI	ACCWGGT	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
SnaBI	TACGTA	1 cut(s)	575
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	5 cut(s)	269, 396, 593, 621, 676
SsiI	CCGC	1 cut(s)	317
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	309, 653
TaaI	ACNGT	5 cut(s)	163, 347, 355, 432, 544
TaiI	ACGT	2 cut(s)	201, 577
TaqI	TCGA	3 cut(s)	165, 507, 666
TasI	AATT	5 cut(s)	269, 396, 593, 621, 676
TatI	WGTACW	2 cut(s)	60, 544
Tru1I	TTAA	2 cut(s)	137, 632
Tru9I	TTAA	2 cut(s)	137, 632
TspDTI	ATGAA	4 cut(s)	387, 408, 506, 618
Van91I	CCANNNNNTGG	1 cut(s)	118
XapI	RAATTY	3 cut(s)	269, 621, 676
XceI	RCATGY	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	384
ZrmI	AGTACT	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.