Rorug05G0018200

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014072
Physical Location & Seq
Reverse (-)
1214967 .. 1217214
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0018200.1

Sequence Viewer

Length: 744 bp
ATGTCCAGCTCCGCCGCAGTCTTCGACGGCGTCGCAGCCACCGCGCTCCGCTCAGTTCTCCACCGCGTCCAGCTGGCAGCCGAAAAGTCCGGCCGCCGCGCCGACGAGATCCGAGTGGTGGCGGTGAGCAAGACGAAGCCGGCGGCCGTCCTCCGCCAAGTCTACGACGCCGGCCACCGCTGCTTCGGCGAGAACTACGTCCAGGAAATCGTCGAGAAAGCTCCTCAGCTTCCTGAAGATATAGAGTGGCATTTTATTGGGAATTTGCAGAGCAATAAAGTAAAGCCTCTTCTAAGTGCTGTTCCCAACCTTGCAATGGTAGAGAGTGTGGATGATGAGAAGATTGCAAATCGTCTTAATACTGTTGTTTCTAGCATTGGGAGAAAGCCTTTGAAGGTCTTGCTCCAAGTGAATACTAGTGGAGAAGAATCAAAATCTGGTGTTGAGCCCTCTGGATGTGTGGAGCTCGCAAAGCATGTGAGTTTGGATTGTCCAAACCTTGAGTTTTGTGGTCTAATGACCATTGGTATGTTGGATTATTCATCTACACCAGAAAACTTTAAGACATTAGCCAACTGCAGAGCGGAGGTCTGCAAGGCACTTGGAATTCCAGAAGAGAAATGTGAGCTATCAATGGGCATGTCTGCGGACTTTCAGCTAGCTATCGAAATGGGAAGCACAAATGTGAGAATTGGATCGACAATTTTTGGGCCAAGAGAATATCCAAAGAAACAATCGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

247

Amino Acids

26.8

Weight (kDa)

6.14

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ala_racemase_N PF01168 20 - 238 1e-16 Alanine racemase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30190 AT2G34610
fragaria_vesca FvH4_3g05300 FvH4_6g37202
malus_domestica MD05G1281700.v1.1 MD10G1260500.v1.1
prunus_persica Prupe.4G082900_v2.0.a1
pyrus_communis pycom10g21640
rosa_laevigata RLG00000032108
rosa_multiflora Rmu_ssc0000422.1_g000035
rosa_roxburghii Rroxscaffold_1G00062150
rosa_rugosa Rorug05G0018200
rosa_samantha Rh5AG113000 Rh5BG109700 Rh5CG121500 Rh5DG108800
rosa_wichuraiana Rw5G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 51, 584
AccI GTMKAC 1 cut(s) 162
AccII CGCG 3 cut(s) 44, 66, 99
AclWI GGATC 2 cut(s) 103, 703
AcoI YGGCCR 3 cut(s) 91, 144, 172
AcsI RAATTY 2 cut(s) 262, 606
AcuI CTGAAG 1 cut(s) 255
AcyI GRCGYC 2 cut(s) 30, 168
AfiI CCNNNNNNNGG 2 cut(s) 118, 316
AgsI TTSAA 1 cut(s) 394
AhlI ACTAGT 1 cut(s) 416
AjnI CCWGG 1 cut(s) 201
AleI CACNNNNGTG 1 cut(s) 683
AluBI AGCT 8 cut(s) 9, 73, 221, 229, 466, 628, 658, 662
AluI AGCT 8 cut(s) 9, 73, 221, 229, 466, 628, 658, 662
Alw21I GWGCWC 1 cut(s) 468
AlwI GGATC 2 cut(s) 103, 703
AoxI GGCC 4 cut(s) 91, 144, 172, 710
ApeKI GCWGC 3 cut(s) 35, 77, 180
ApoI RAATTY 2 cut(s) 262, 606
AspLEI GCGC 2 cut(s) 46, 101
AspS9I GGNCC 1 cut(s) 710
AsuHPI GGTGA 1 cut(s) 136
AsuNHI GCTAGC 1 cut(s) 658
BanII GRGCYC 2 cut(s) 450, 468
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BbsI GAAGAC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 468
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 47, 89, 167
BceAI ACGGC 2 cut(s) 43, 131
BciT130I CCWGG 1 cut(s) 203
BcuI ACTAGT 1 cut(s) 416
BfaI CTAG 3 cut(s) 372, 417, 659
BfmI CTRYAG 1 cut(s) 577
BisI GCNGC 7 cut(s) 15, 36, 78, 94, 97, 144, 181
BlsI GCNGC 7 cut(s) 16, 37, 79, 95, 98, 145, 182
Bme1390I CCNGG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 710
BmrFI CCNGG 1 cut(s) 203
BmtI GCTAGC 1 cut(s) 662
BpiI GAAGAC 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 521
BsaHI GRCGYC 2 cut(s) 30, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 316
Bse118I RCCGGY 2 cut(s) 139, 170
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 203
BseGI GGATG 2 cut(s) 337, 461
BseLI CCNNNNNNNGG 2 cut(s) 118, 316
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 66, 239
BseRI GAGGAG 1 cut(s) 213
BseX3I CGGCCG 2 cut(s) 91, 144
BseXI GCAGC 3 cut(s) 47, 89, 167
Bsh1236I CGCG 3 cut(s) 44, 66, 99
Bsh1285I CGRYCG 2 cut(s) 94, 147
BshFI GGCC 4 cut(s) 93, 146, 174, 712
BsiEI CGRYCG 2 cut(s) 94, 147
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 3 cut(s) 90, 140, 171
BslI CCNNNNNNNGG 2 cut(s) 118, 316
BsnI GGCC 4 cut(s) 93, 146, 174, 712
Bsp1286I GDGCHC 2 cut(s) 450, 468
Bsp143I GATC 2 cut(s) 108, 695
BspANI GGCC 4 cut(s) 93, 146, 174, 712
BspCNI CTCAG 2 cut(s) 65, 238
BspFNI CGCG 3 cut(s) 44, 66, 99
BspMAI CTGCAG 1 cut(s) 581
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 2 cut(s) 103, 703
BsrBI CCGCTC 2 cut(s) 51, 584
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 2 cut(s) 139, 170
BssAI RCCGGY 2 cut(s) 139, 170
BssMI GATC 2 cut(s) 108, 695
BssNI GRCGYC 2 cut(s) 30, 168
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 2 cut(s) 294, 609
BstACI GRCGYC 2 cut(s) 30, 168
BstC8I GCNNGC 5 cut(s) 75, 141, 172, 468, 660
BstDEI CTNAG 4 cut(s) 52, 225, 293, 741
BstF5I GGATG 2 cut(s) 337, 461
BstFNI CGCG 3 cut(s) 44, 66, 99
BstHHI GCGC 2 cut(s) 46, 101
BstKTI GATC 2 cut(s) 111, 698
BstMBI GATC 2 cut(s) 108, 695
BstMCI CGRYCG 2 cut(s) 94, 147
BstMWI GCNNNNNNNGC 4 cut(s) 41, 180, 186, 472
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 2 cut(s) 479, 643
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 577
BstUI CGCG 3 cut(s) 44, 66, 99
BstV1I GCAGC 3 cut(s) 47, 89, 167
BstV2I GAAGAC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BstZI CGGCCG 2 cut(s) 91, 144
BsuRI GGCC 4 cut(s) 93, 146, 174, 712
BtsCI GGATG 2 cut(s) 337, 461
Cac8I GCNNGC 5 cut(s) 75, 141, 172, 468, 660
CfoI GCGC 2 cut(s) 46, 101
Cfr10I RCCGGY 2 cut(s) 139, 170
Cfr13I GGNCC 1 cut(s) 710
CseI GACGC 3 cut(s) 19, 55, 176
CviAII CATG 2 cut(s) 476, 640
DdeI CTNAG 4 cut(s) 52, 225, 293, 741
DpnI GATC 2 cut(s) 110, 697
DpnII GATC 2 cut(s) 108, 695
EaeI YGGCCR 3 cut(s) 91, 144, 172
EagI CGGCCG 2 cut(s) 91, 144
Eam1104I CTCTTC 2 cut(s) 294, 609
EarI CTCTTC 2 cut(s) 294, 609
EciI GGCGGA 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 466
EclXI CGGCCG 2 cut(s) 91, 144
Eco24I GRGCYC 2 cut(s) 450, 468
Eco52I CGGCCG 2 cut(s) 91, 144
Eco53kI GAGCTC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 466
EcoRI GAATTC 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 201
EcoT38I GRGCYC 2 cut(s) 450, 468
FaeI CATG 2 cut(s) 479, 643
FaiI YATR 4 cut(s) 242, 477, 530, 641
FatI CATG 2 cut(s) 475, 639
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 7 cut(s) 15, 36, 78, 94, 97, 144, 181
FokI GGATG 2 cut(s) 344, 468
FriOI GRGCYC 2 cut(s) 450, 468
Fsp4HI GCNGC 7 cut(s) 15, 36, 78, 94, 97, 144, 181
FspBI CTAG 3 cut(s) 372, 417, 659
GlaI GCGC 2 cut(s) 45, 100
GluI GCNGC 7 cut(s) 15, 36, 78, 94, 97, 144, 181
HaeIII GGCC 4 cut(s) 93, 146, 174, 712
HapII CCGG 3 cut(s) 90, 140, 171
HgaI GACGC 3 cut(s) 19, 55, 176
HhaI GCGC 2 cut(s) 46, 101
Hin1I GRCGYC 2 cut(s) 30, 168
Hin1II CATG 2 cut(s) 479, 643
Hin6I GCGC 2 cut(s) 44, 99
HinP1I GCGC 2 cut(s) 44, 99
HinfI GANTC 1 cut(s) 428
HpaII CCGG 3 cut(s) 90, 140, 171
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 4 cut(s) 214, 233, 453, 611
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 5 cut(s) 29, 35, 107, 170, 215
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 5 cut(s) 268, 314, 347, 579, 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 180, 186, 472
HpyF3I CTNAG 4 cut(s) 52, 225, 293, 741
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 2 cut(s) 30, 168
Hsp92II CATG 2 cut(s) 479, 643
HspAI GCGC 2 cut(s) 44, 99
KroI GCCGGC 2 cut(s) 139, 170
KroNI GCCGGC 2 cut(s) 141, 172
Kzo9I GATC 2 cut(s) 108, 695
LmnI GCTCC 5 cut(s) 14, 51, 226, 408, 463
Lsp1109I GCAGC 3 cut(s) 47, 89, 167
MaeI CTAG 3 cut(s) 372, 417, 659
MaeII ACGT 1 cut(s) 198
MalI GATC 2 cut(s) 110, 697
MbiI CCGCTC 2 cut(s) 51, 584
MboI GATC 2 cut(s) 108, 695
MboII GAAGA 6 cut(s) 13, 248, 281, 352, 437, 626
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 2 cut(s) 450, 468
MluCI AATT 4 cut(s) 262, 606, 690, 702
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 5 cut(s) 161, 234, 297, 460, 580
MroNI GCCGGC 2 cut(s) 139, 170
MseI TTAA 2 cut(s) 357, 561
MslI CAYNNNNRTG 2 cut(s) 527, 683
MspA1I CMGCKG 2 cut(s) 73, 180
MspI CCGG 3 cut(s) 90, 140, 171
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 3 cut(s) 44, 66, 99
MwoI GCNNNNNNNGC 4 cut(s) 41, 180, 186, 472
NaeI GCCGGC 2 cut(s) 141, 172
NdeII GATC 2 cut(s) 108, 695
NgoMIV GCCGGC 2 cut(s) 139, 170
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 2 cut(s) 479, 643
NspI RCATGY 2 cut(s) 479, 643
OliI CACNNNNGTG 1 cut(s) 683
PdiI GCCGGC 2 cut(s) 141, 172
PfeI GAWTC 1 cut(s) 428
PflFI GACNNNGTC 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 7 cut(s) 16, 37, 79, 95, 98, 145, 182
Psp124BI GAGCTC 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspPI GGNCC 1 cut(s) 710
PstI CTGCAG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 108
PsyI GACNNNGTC 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 73
RseI CAYNNNNRTG 2 cut(s) 527, 683
SacI GAGCTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 357, 561
SatI GCNGC 7 cut(s) 15, 36, 78, 94, 97, 144, 181
Sau3AI GATC 2 cut(s) 108, 695
Sau96I GGNCC 1 cut(s) 710
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 2 cut(s) 450, 468
SfcI CTRYAG 1 cut(s) 577
SmiMI CAYNNNNRTG 2 cut(s) 527, 683
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SpeI ACTAGT 1 cut(s) 416
Sse9I AATT 4 cut(s) 262, 606, 690, 702
SspMI CTAG 3 cut(s) 372, 417, 659
SstI GAGCTC 1 cut(s) 468
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 1 cut(s) 201
TaqI TCGA 5 cut(s) 24, 213, 666, 698, 737
TasI AATT 4 cut(s) 262, 606, 690, 702
TauI GCSGC 4 cut(s) 17, 96, 99, 146
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 2 cut(s) 357, 561
Tru9I TTAA 2 cut(s) 357, 561
TseI GCWGC 3 cut(s) 35, 77, 180
TspDTI ATGAA 1 cut(s) 531
Tth111I GACNNNGTC 1 cut(s) 29
XapI RAATTY 2 cut(s) 262, 606
XceI RCATGY 2 cut(s) 479, 643
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 529
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 3 cut(s) 372, 417, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.