MD10G1260500.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0014072
Physical Location & Seq
Reverse (-)
35404047 .. 35404805
759 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1260500.v1.1.491

Sequence Viewer

Length: 759 bp
ATGGCCAAACTTCAACAAAATCTAGTGCAAGATTTAGCGAAACCCTACAAATCCAGAGAATATTATCCTCACAAAGCTAAAGGGATATCCATCTTGGCCTTTTTCTTCTCTATACTAATTTACATTTGCATCTTCCATATCTTCAACATCTCCCTCTCAACTGTCTTCAACAACTCCAAGTTCTGGTTTGCCATATCCAACACCCTCATCCTCATTATCGCTGTCGACTGTGGCGCATTCTCTTCGGCCTCCAAAGACCAACAAGACTATTTTTACCAAGAGTACATGATGCATAGCCAAGCAGCTCGTAGTGCTTCCTCATTTGTTTCTCAATACCCTCAAATTGTCAACAAAAGCAGTCCTAAGCAATTAGAGGCGGGAAACAATAGGAAAACAAAGAATGAAGAAGTACTCCTCGTACCTCAAAATACAGAAATCGTCCAAGAAAAGAGGGTAGTCCACGTGTTGAAAGGCGATAATGATCAGAATAAAAGTTGTAGCGCTGGAAGAGAAAATGTTCGGGAAAAAACTTATCGGCGAAGTAAGTCTGAGAAAGCGAAAAGAGGAGTGATCAACAATGAGAGGAAGAACACTCTAAGGAGGTCAGAGACGACTTATCAGAAGCACAAACCAACTGCTGATGAAGACAATGAATTTTCGACCATGTCTAACGAAGAACTAAACAAAAGAGCCGAAGAGTTTATTCAGAGGTTTAACAGACAAATTAGGCTTCAATCAACAGCTACAACCTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

253

Amino Acids

29.22

Weight (kDa)

9.56

Isoelectric Point (pI)

65.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 225 - 246 2.1e-07 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30190 AT2G34610
fragaria_vesca FvH4_3g05300 FvH4_6g37202
malus_domestica MD05G1281700.v1.1 MD10G1260500.v1.1
prunus_persica Prupe.4G082900_v2.0.a1
pyrus_communis pycom10g21640
rosa_laevigata RLG00000032108
rosa_multiflora Rmu_ssc0000422.1_g000035
rosa_roxburghii Rroxscaffold_1G00062150
rosa_rugosa Rorug05G0018200
rosa_samantha Rh5AG113000 Rh5BG109700 Rh5CG121500 Rh5DG108800
rosa_wichuraiana Rw5G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 183
AccI GTMKAC 1 cut(s) 225
AciI CCGC 1 cut(s) 377
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 653
AcvI CACGTG 1 cut(s) 463
AfaI GTAC 3 cut(s) 284, 411, 420
AfeI AGCGCT 1 cut(s) 502
AfiI CCNNNNNNNGG 1 cut(s) 183
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 5 cut(s) 14, 145, 169, 469, 734
AluBI AGCT 3 cut(s) 77, 305, 743
AluI AGCT 3 cut(s) 77, 305, 743
Alw26I GTCTC 1 cut(s) 602
Aor51HI AGCGCT 1 cut(s) 502
AoxI GGCC 3 cut(s) 3, 96, 246
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 653
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 2 cut(s) 236, 503
BalI TGGCCA 1 cut(s) 5
BbrPI CACGTG 1 cut(s) 463
BbsI GAAGAC 2 cut(s) 157, 651
BbvI GCAGC 1 cut(s) 314
BccI CCATC 1 cut(s) 98
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BclI TGATCA 2 cut(s) 481, 570
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 1 cut(s) 23
BfoI RGCGCY 1 cut(s) 504
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
BmcAI AGTACT 1 cut(s) 411
BmsI GCATC 2 cut(s) 138, 279
BpiI GAAGAC 2 cut(s) 157, 651
Bpu10I CCTNAGC 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 463
BsaBI GATNNNNATC 2 cut(s) 89, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse8I GATNNNNATC 2 cut(s) 89, 480
BseGI GGATG 1 cut(s) 207
BseJI GATNNNNATC 2 cut(s) 89, 480
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 540
BseRI GAGGAG 2 cut(s) 404, 579
BseXI GCAGC 1 cut(s) 314
BshFI GGCC 3 cut(s) 5, 98, 248
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 602
BsmBI CGTCTC 1 cut(s) 602
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 3 cut(s) 5, 98, 248
Bsp143I GATC 2 cut(s) 481, 570
BspACI CCGC 1 cut(s) 377
BspANI GGCC 3 cut(s) 5, 98, 248
BspCNI CTCAG 1 cut(s) 541
BssMI GATC 2 cut(s) 481, 570
Bst4CI ACNGT 2 cut(s) 163, 230
Bst6I CTCTTC 3 cut(s) 247, 502, 690
BstBAI YACGTR 1 cut(s) 463
BstDEI CTNAG 3 cut(s) 363, 549, 596
BstF5I GGATG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 504
BstHHI GCGC 2 cut(s) 236, 503
BstKTI GATC 2 cut(s) 484, 573
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 2 cut(s) 481, 570
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 314
BstV2I GAAGAC 2 cut(s) 157, 651
BsuRI GGCC 3 cut(s) 5, 98, 248
BtsCI GGATG 1 cut(s) 207
CfoI GCGC 2 cut(s) 236, 503
Csp6I GTAC 3 cut(s) 283, 410, 419
CviAII CATG 2 cut(s) 286, 664
CviJI RGCY 9 cut(s) 5, 77, 98, 248, 297, 305, 692, 730, 743
CviKI_1 RGCY 9 cut(s) 5, 77, 98, 248, 297, 305, 692, 730, 743
CviQI GTAC 3 cut(s) 283, 410, 419
DdeI CTNAG 3 cut(s) 363, 549, 596
DpnI GATC 2 cut(s) 483, 572
DpnII GATC 2 cut(s) 481, 570
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 247, 502, 690
EarI CTCTTC 3 cut(s) 247, 502, 690
Eco32I GATATC 1 cut(s) 87
Eco47III AGCGCT 1 cut(s) 502
Eco72I CACGTG 1 cut(s) 463
EcoRV GATATC 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 602
FaeI CATG 2 cut(s) 289, 667
FaiI YATR 6 cut(s) 113, 138, 194, 287, 294, 665
FatI CATG 2 cut(s) 285, 663
FauI CCCGC 1 cut(s) 370
FbaI TGATCA 2 cut(s) 481, 570
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 1 cut(s) 23
GlaI GCGC 2 cut(s) 235, 502
GluI GCNGC 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 504
HaeIII GGCC 3 cut(s) 5, 98, 248
HhaI GCGC 2 cut(s) 236, 503
Hin1II CATG 2 cut(s) 289, 667
Hin6I GCGC 2 cut(s) 234, 501
HinP1I GCGC 2 cut(s) 234, 501
HincII GTYRAC 2 cut(s) 226, 349
HindII GTYRAC 2 cut(s) 226, 349
Hpy166II GTNNAC 3 cut(s) 226, 349, 460
Hpy188I TCNGA 5 cut(s) 486, 550, 607, 621, 708
Hpy188III TCNNGA 2 cut(s) 54, 521
Hpy8I GTNNAC 3 cut(s) 226, 349, 460
HpyCH4III ACNGT 2 cut(s) 163, 230
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 3 cut(s) 28, 129, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 3 cut(s) 363, 549, 596
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 2 cut(s) 289, 667
HspAI GCGC 2 cut(s) 234, 501
Ksp22I TGATCA 2 cut(s) 481, 570
Kzo9I GATC 2 cut(s) 481, 570
LpnPI CCDG 3 cut(s) 67, 169, 489
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 2 cut(s) 138, 279
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 462
MalI GATC 2 cut(s) 483, 572
MboI GATC 2 cut(s) 481, 570
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 117, 342, 368, 653, 723
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 222
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 516
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 714, 757
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 2 cut(s) 481, 570
NlaIII CATG 2 cut(s) 289, 667
NsiI ATGCAT 1 cut(s) 294
PctI GAATGC 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 516
PflFI GACNNNGTC 1 cut(s) 664
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 1 cut(s) 304
PmaCI CACGTG 1 cut(s) 463
PmlI CACGTG 1 cut(s) 463
Ppu21I YACGTR 1 cut(s) 463
PspCI CACGTG 1 cut(s) 463
PsyI GACNNNGTC 1 cut(s) 664
RsaI GTAC 3 cut(s) 284, 411, 420
RsaNI GTAC 3 cut(s) 283, 410, 419
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 714, 757
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 481, 570
ScaI AGTACT 1 cut(s) 411
SetI ASST 8 cut(s) 79, 307, 424, 465, 605, 713, 745, 752
SfaNI GCATC 2 cut(s) 138, 279
Sse9I AATT 5 cut(s) 117, 342, 368, 653, 723
SsiI CCGC 1 cut(s) 377
SspI AATATT 1 cut(s) 62
SspMI CTAG 1 cut(s) 23
TaaI ACNGT 2 cut(s) 163, 230
TaiI ACGT 1 cut(s) 465
TaqI TCGA 2 cut(s) 225, 659
TasI AATT 5 cut(s) 117, 342, 368, 653, 723
TatI WGTACW 2 cut(s) 282, 409
Tru1I TTAA 2 cut(s) 714, 757
Tru9I TTAA 2 cut(s) 714, 757
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 417, 657, 666
Tth111I GACNNNGTC 1 cut(s) 664
Van91I CCANNNNNTGG 1 cut(s) 183
XapI RAATTY 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 411
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.