Rw5G009800

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0014072
Physical Location & Seq
Forward (+)
10600970 .. 10601770
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009800.1

Sequence Viewer

Length: 801 bp
ATGGCCAAAACACCACCAACTGCAGTCCAAGATTCGACGAAAGCCTACAAATTCGAAGATCATTACAAATCTAGTGCAAGATCCTTGATTGCCTTCTTCTTCTCTATACTAATTTACACTTCCATCTTCTATATTTTCAACCTCTCTCCTTCCACTCTCTTCTACAACACCAAGTTTTGGTTTGCGATATCCAACACCCTGATTCTTATCATTGCAGCCGACTACTCTTCTTCTAAAGACAAGCACGACCAGATTAATTACCAAGAAGAGTATATGATGCCTAGGCAAGCTCAAACTACTTCCTCATTTGTTTTGGAATACCCTCGTGAAATAGTCAAGGAAACCATTATTGATCACCAAGTTGCACGTCAAAATATACGAAACCCAGAAAACAGGCAAATTGTGCTTAAAGACGAGCATGATGAAAAGCCTAGTGTTGATGATATTGATGTCCAAGAAAAGAAAATAGTCCACGTACAGTCAAAAGGAAGTAAGAAAGAAAATATTCAAGCAAAAACTTACAAACGAAGTAAGTCGGAGGAGGTGAAAAGAGTGTTGATCGACGAATGCAAGAGCAATATTATAAGGAGGTCGGAGACAATGGAGAAGCACGAAGAAACTCAAGTAAGTACTCCGGAAGAAGTTATTGATGAATTCCCAACCATGCCAGATGAAGAATTGATTCAACTGAACAGAAGATGTGAAGAGTTTATTCAAAGGTTTAGTCAACAAATTAGGCATCAATCAGTTGCAGACAGAAGGCCCAAAAAACCTACCATCATGTCTAAAGTTCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

266

Amino Acids

31.34

Weight (kDa)

6.68

Isoelectric Point (pI)

66.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30190 AT2G34610
fragaria_vesca FvH4_3g05300 FvH4_6g37202
malus_domestica MD05G1281700.v1.1 MD10G1260500.v1.1
prunus_persica Prupe.4G082900_v2.0.a1
pyrus_communis pycom10g21640
rosa_laevigata RLG00000032108
rosa_multiflora Rmu_ssc0000422.1_g000035
rosa_roxburghii Rroxscaffold_1G00062150
rosa_rugosa Rorug05G0018200
rosa_samantha Rh5AG113000 Rh5BG109700 Rh5CG121500 Rh5DG108800
rosa_wichuraiana Rw5G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AccB7I CCANNNNNTGG 1 cut(s) 177
AccIII TCCGGA 1 cut(s) 634
AclWI GGATC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 50, 653
AfaI GTAC 2 cut(s) 477, 631
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 4 cut(s) 139, 509, 686, 716
AjiI CACGTC 1 cut(s) 368
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 1 cut(s) 75
Aor13HI TCCGGA 1 cut(s) 634
AoxI GGCC 2 cut(s) 3, 761
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 50, 653
ArsI GACNNNNNNTTYG 2 cut(s) 709, 741
AseI ATTAAT 1 cut(s) 255
Asp700I GAANNNNTTC 2 cut(s) 504, 681
AspA2I CCTAGG 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 762
AsuHPI GGTGA 2 cut(s) 347, 556
AsuII TTCGAA 1 cut(s) 54
AvrII CCTAGG 1 cut(s) 281
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 324
BbvI GCAGC 1 cut(s) 227
BccI CCATC 2 cut(s) 131, 785
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 3 cut(s) 72, 282, 432
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 216
BlnI CCTAGG 1 cut(s) 281
BlsI GCNGC 1 cut(s) 217
BmcAI AGTACT 1 cut(s) 631
BmgBI CACGTC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 762
BmsI GCATC 2 cut(s) 267, 748
Bpu14I TTCGAA 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 606
BsaAI YACGTR 1 cut(s) 475
BsaBI GATNNNNATC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 634
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 206
BseAI TCCGGA 1 cut(s) 634
BseDI CCNNGG 1 cut(s) 281
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 554
BseXI GCAGC 1 cut(s) 227
BshFI GGCC 2 cut(s) 5, 763
BsiSI CCGG 1 cut(s) 635
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 590
BsmI GAATGC 1 cut(s) 572
BsnI GGCC 2 cut(s) 5, 763
Bsp119I TTCGAA 1 cut(s) 54
Bsp13I TCCGGA 1 cut(s) 634
Bsp143I GATC 4 cut(s) 58, 80, 352, 558
BspANI GGCC 2 cut(s) 5, 763
BspEI TCCGGA 1 cut(s) 634
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 4 cut(s) 58, 80, 352, 558
BssSI CACGAG 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 281
Bst2BI CACGAG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 480
Bst6I CTCTTC 4 cut(s) 164, 232, 261, 699
BstAPI GCANNNNNTGC 1 cut(s) 403
BstBAI YACGTR 1 cut(s) 475
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 288
BstKTI GATC 4 cut(s) 61, 83, 355, 561
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 4 cut(s) 58, 80, 352, 558
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 2 cut(s) 5, 763
BtrI CACGTC 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 762
Csp6I GTAC 2 cut(s) 476, 630
CviAII CATG 3 cut(s) 419, 664, 781
CviJI RGCY 6 cut(s) 5, 44, 218, 290, 430, 763
CviKI_1 RGCY 6 cut(s) 5, 44, 218, 290, 430, 763
CviQI GTAC 2 cut(s) 476, 630
DpnI GATC 4 cut(s) 60, 82, 354, 560
DpnII GATC 4 cut(s) 58, 80, 352, 558
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 164, 232, 261, 699
EarI CTCTTC 4 cut(s) 164, 232, 261, 699
Eco130I CCWWGG 1 cut(s) 281
Eco32I GATATC 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 653
EcoRV GATATC 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 3 cut(s) 422, 667, 784
FaiI YATR 9 cut(s) 107, 132, 273, 275, 377, 420, 584, 665, 782
FatI CATG 3 cut(s) 418, 663, 780
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 3 cut(s) 72, 282, 432
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 2 cut(s) 5, 763
HapII CCGG 1 cut(s) 635
Hin1II CATG 3 cut(s) 422, 667, 784
HincII GTYRAC 1 cut(s) 728
HindII GTYRAC 1 cut(s) 728
HinfI GANTC 3 cut(s) 32, 202, 682
HpaII CCGG 1 cut(s) 635
HphI GGTGA 2 cut(s) 347, 556
Hpy166II GTNNAC 2 cut(s) 472, 728
Hpy188I TCNGA 2 cut(s) 538, 595
Hpy188III TCNNGA 3 cut(s) 326, 635, 794
Hpy8I GTNNAC 2 cut(s) 472, 728
Hpy99I CGWCG 2 cut(s) 40, 566
HpyAV CCTTC 3 cut(s) 103, 159, 753
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4IV ACGT 2 cut(s) 367, 474
HpyCH4V TGCA 6 cut(s) 23, 77, 215, 365, 570, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
HpySE526I ACGT 2 cut(s) 367, 474
Hsp92II CATG 3 cut(s) 422, 667, 784
Kpn2I TCCGGA 1 cut(s) 634
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 4 cut(s) 58, 80, 352, 558
LpnPI CCDG 6 cut(s) 212, 263, 379, 399, 648, 681
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 2 cut(s) 267, 748
MaeI CTAG 3 cut(s) 72, 282, 432
MaeII ACGT 2 cut(s) 367, 474
MalI GATC 4 cut(s) 60, 82, 354, 560
MboI GATC 4 cut(s) 58, 80, 352, 558
MflI RGATCY 1 cut(s) 80
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 50, 111, 256, 399, 653, 677, 732
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 216, 516, 573
MnlI CCTC 6 cut(s) 152, 313, 333, 532, 535, 582
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 634
MroXI GAANNNNTTC 2 cut(s) 504, 681
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 255, 408
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 635
Mva1269I GAATGC 1 cut(s) 572
MwoI GCNNNNNNNGC 1 cut(s) 403
NdeII GATC 4 cut(s) 58, 80, 352, 558
NlaIII CATG 3 cut(s) 422, 667, 784
NspV TTCGAA 1 cut(s) 54
PctI GAATGC 1 cut(s) 572
PdmI GAANNNNTTC 2 cut(s) 504, 681
PfeI GAWTC 3 cut(s) 32, 202, 682
PflMI CCANNNNNTGG 1 cut(s) 177
PkrI GCNGC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 475
PshBI ATTAAT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 584
PspPI GGNCC 1 cut(s) 762
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 2 cut(s) 477, 631
RsaNI GTAC 2 cut(s) 476, 630
SaqAI TTAA 2 cut(s) 255, 408
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 4 cut(s) 58, 80, 352, 558
Sau96I GGNCC 1 cut(s) 762
ScaI AGTACT 1 cut(s) 631
SetI ASST 8 cut(s) 144, 292, 370, 477, 546, 593, 722, 775
SfaNI GCATC 2 cut(s) 267, 748
SfcI CTRYAG 1 cut(s) 21
SfuI TTCGAA 1 cut(s) 54
SmlI CTYRAG 2 cut(s) 621, 794
SmoI CTYRAG 2 cut(s) 621, 794
Sse9I AATT 7 cut(s) 50, 111, 256, 399, 653, 677, 732
SspI AATATT 2 cut(s) 505, 580
SspMI CTAG 3 cut(s) 72, 282, 432
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 480
TaiI ACGT 2 cut(s) 370, 477
TaqI TCGA 3 cut(s) 35, 54, 561
TasI AATT 7 cut(s) 50, 111, 256, 399, 653, 677, 732
TatI WGTACW 1 cut(s) 629
TfiI GAWTC 3 cut(s) 32, 202, 682
Tru1I TTAA 2 cut(s) 255, 408
Tru9I TTAA 2 cut(s) 255, 408
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 3 cut(s) 438, 666, 687
Van91I CCANNNNNTGG 1 cut(s) 177
VspI ATTAAT 1 cut(s) 255
XapI RAATTY 2 cut(s) 50, 653
XmaJI CCTAGG 1 cut(s) 281
XmnI GAANNNNTTC 2 cut(s) 504, 681
XspI CTAG 3 cut(s) 72, 282, 432
ZrmI AGTACT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.