Rh5BG109700

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014072
Physical Location & Seq
Forward (+)
10268459 .. 10269557
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG109700.1

Sequence Viewer

Length: 822 bp
ATGGCCAAAACACCACCAACTGCAGTCCAAGATTCGACGAAAGCCTACAAATTCGAAGAACATTATCCTCAAGAACCCCACAAATCTAGTGCAAGATCCTTGATTGCCTTCTTCTTCTCTATACTAATTTACACTTCCATCTTCTATATTTTCAACCTCTCTCCTTCCACTCTCTTCTACAACACCAAGTTTTGGTTTGCGATATCCAACACCCTGATTCTTATCATTGCAGCCGACTACTCTTCTTCTAAAGACAAGCACGACCAGATTAATTACCAAGAAGAGTATATGATGCATAGGCAAGCTCAAACTACTTCGAATTCCTCATTTGTTTTGGAATACCCTCGTGAAATAGTCAAGGAAACCATTATTGATCACCAAGTTGCACGTCAAAATATACGAAACCCAGAAAACAGGCAAATTGTGCTTAAAGACGAGCATGATGAAAAGCCTAGTGTTGATGATATTGATGTCCAAGAAAAGAAAATAGTCCACGTACAGTCAAAAGGTGGTAAGAAAGAAAATATTCAAGCAAAAACTTACAAGCGAAGTAAGTCGGAGGAGGTGAAAAGAGTGGTGATCGACGAATGCAAGAGCAATATTATAAGGAGGTCGGAGACAATGGAGAAGCACGAAGAAACTCAAGTAAGTACTCCGGAAGAAGTTATTGATGAATTCTCAACCATGTCAGATGAAGAACTGATTCAACTGAACAGAAGATGTGAAGAGTTTATTCAAAGCTTTAATGAACAAATTAGGCATCAATCAGTTGCAGACAGAAGGCCCAAAAAACCTACCATCATGTCTAAAGTTCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

273

Amino Acids

32.08

Weight (kDa)

6.18

Isoelectric Point (pI)

69.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30190 AT2G34610
fragaria_vesca FvH4_3g05300 FvH4_6g37202
malus_domestica MD05G1281700.v1.1 MD10G1260500.v1.1
prunus_persica Prupe.4G082900_v2.0.a1
pyrus_communis pycom10g21640
rosa_laevigata RLG00000032108
rosa_multiflora Rmu_ssc0000422.1_g000035
rosa_roxburghii Rroxscaffold_1G00062150
rosa_rugosa Rorug05G0018200
rosa_samantha Rh5AG113000 Rh5BG109700 Rh5CG121500 Rh5DG108800
rosa_wichuraiana Rw5G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
AccB7I CCANNNNNTGG 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 655
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 50, 319, 674
AfaI GTAC 2 cut(s) 498, 652
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 4 cut(s) 154, 530, 707, 737
AjiI CACGTC 1 cut(s) 389
AluBI AGCT 2 cut(s) 305, 741
AluI AGCT 2 cut(s) 305, 741
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 1 cut(s) 90
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 2 cut(s) 3, 782
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 3 cut(s) 50, 319, 674
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 2 cut(s) 525, 702
AspS9I GGNCC 1 cut(s) 783
AsuHPI GGTGA 3 cut(s) 368, 577, 589
AsuII TTCGAA 2 cut(s) 54, 317
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 345
BbvI GCAGC 1 cut(s) 242
BccI CCATC 2 cut(s) 146, 806
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 2 cut(s) 87, 453
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 652
BmgBI CACGTC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 783
BmsI GCATC 2 cut(s) 282, 769
Bpu14I TTCGAA 2 cut(s) 54, 317
BpuEI CTTGAG 2 cut(s) 54, 627
BsaAI YACGTR 1 cut(s) 496
BsaBI GATNNNNATC 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 221
BseAI TCCGGA 1 cut(s) 655
BseJI GATNNNNATC 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 575
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 2 cut(s) 5, 784
BsiSI CCGG 1 cut(s) 656
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 611
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 2 cut(s) 5, 784
Bsp119I TTCGAA 2 cut(s) 54, 317
Bsp13I TCCGGA 1 cut(s) 655
Bsp143I GATC 3 cut(s) 95, 373, 579
BspANI GGCC 2 cut(s) 5, 784
BspEI TCCGGA 1 cut(s) 655
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 90
BspT104I TTCGAA 2 cut(s) 54, 317
BsrDI GCAATG 1 cut(s) 225
BssMI GATC 3 cut(s) 95, 373, 579
BssSI CACGAG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 501
Bst6I CTCTTC 4 cut(s) 179, 247, 276, 720
BstAPI GCANNNNNTGC 1 cut(s) 424
BstBAI YACGTR 1 cut(s) 496
BstBI TTCGAA 2 cut(s) 54, 317
BstC8I GCNNGC 1 cut(s) 303
BstKTI GATC 3 cut(s) 98, 376, 582
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 3 cut(s) 95, 373, 579
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 2 cut(s) 5, 784
BtrI CACGTC 1 cut(s) 389
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 783
Csp6I GTAC 2 cut(s) 497, 651
CviAII CATG 3 cut(s) 440, 685, 802
CviJI RGCY 7 cut(s) 5, 44, 233, 305, 451, 741, 784
CviKI_1 RGCY 7 cut(s) 5, 44, 233, 305, 451, 741, 784
CviQI GTAC 2 cut(s) 497, 651
DpnI GATC 3 cut(s) 97, 375, 581
DpnII GATC 3 cut(s) 95, 373, 579
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 179, 247, 276, 720
EarI CTCTTC 4 cut(s) 179, 247, 276, 720
Eco32I GATATC 1 cut(s) 204
EcoRI GAATTC 2 cut(s) 319, 674
EcoRV GATATC 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 297
FaeI CATG 3 cut(s) 443, 688, 805
FatI CATG 3 cut(s) 439, 684, 801
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 87, 453
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 5, 784
HapII CCGG 1 cut(s) 656
Hin1II CATG 3 cut(s) 443, 688, 805
HindIII AAGCTT 1 cut(s) 739
HinfI GANTC 3 cut(s) 32, 217, 703
HpaII CCGG 1 cut(s) 656
HphI GGTGA 3 cut(s) 368, 577, 589
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 3 cut(s) 559, 616, 691
Hpy188III TCNNGA 4 cut(s) 71, 347, 656, 815
Hpy8I GTNNAC 1 cut(s) 493
Hpy99I CGWCG 2 cut(s) 40, 587
HpyAV CCTTC 3 cut(s) 118, 174, 774
HpyCH4III ACNGT 1 cut(s) 501
HpyCH4IV ACGT 2 cut(s) 388, 495
HpyCH4V TGCA 7 cut(s) 23, 92, 230, 295, 386, 591, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpySE526I ACGT 2 cut(s) 388, 495
Hsp92II CATG 3 cut(s) 443, 688, 805
Kpn2I TCCGGA 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 95, 373, 579
LpnPI CCDG 5 cut(s) 227, 278, 400, 420, 669
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 2 cut(s) 282, 769
MaeI CTAG 2 cut(s) 87, 453
MaeII ACGT 2 cut(s) 388, 495
MalI GATC 3 cut(s) 97, 375, 581
MboI GATC 3 cut(s) 95, 373, 579
MflI RGATCY 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 50, 126, 271, 319, 420, 674, 753
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 231, 537, 594
MnlI CCTC 7 cut(s) 78, 167, 334, 354, 553, 556, 603
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 297
MroI TCCGGA 1 cut(s) 655
MroXI GAANNNNTTC 2 cut(s) 525, 702
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 270, 429, 744
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 656
Mva1269I GAATGC 1 cut(s) 593
MwoI GCNNNNNNNGC 1 cut(s) 424
NdeII GATC 3 cut(s) 95, 373, 579
NlaIII CATG 3 cut(s) 443, 688, 805
NsiI ATGCAT 1 cut(s) 297
NspV TTCGAA 2 cut(s) 54, 317
PctI GAATGC 1 cut(s) 593
PdmI GAANNNNTTC 2 cut(s) 525, 702
PfeI GAWTC 3 cut(s) 32, 217, 703
PflMI CCANNNNNTGG 1 cut(s) 192
PkrI GCNGC 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 496
PshBI ATTAAT 1 cut(s) 270
PsiI TTATAA 1 cut(s) 605
PspPI GGNCC 1 cut(s) 783
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 95
RsaI GTAC 2 cut(s) 498, 652
RsaNI GTAC 2 cut(s) 497, 651
SaqAI TTAA 3 cut(s) 270, 429, 744
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 3 cut(s) 95, 373, 579
Sau96I GGNCC 1 cut(s) 783
ScaI AGTACT 1 cut(s) 652
SetI ASST 9 cut(s) 159, 307, 391, 498, 511, 567, 614, 743, 796
SfaNI GCATC 2 cut(s) 282, 769
SfcI CTRYAG 1 cut(s) 21
SfuI TTCGAA 2 cut(s) 54, 317
SmlI CTYRAG 3 cut(s) 69, 642, 815
SmoI CTYRAG 3 cut(s) 69, 642, 815
Sse9I AATT 7 cut(s) 50, 126, 271, 319, 420, 674, 753
SspI AATATT 2 cut(s) 526, 601
SspMI CTAG 2 cut(s) 87, 453
TaaI ACNGT 1 cut(s) 501
TaiI ACGT 2 cut(s) 391, 498
TaqI TCGA 4 cut(s) 35, 54, 317, 582
TasI AATT 7 cut(s) 50, 126, 271, 319, 420, 674, 753
TatI WGTACW 1 cut(s) 650
TfiI GAWTC 3 cut(s) 32, 217, 703
Tru1I TTAA 3 cut(s) 270, 429, 744
Tru9I TTAA 3 cut(s) 270, 429, 744
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 4 cut(s) 459, 687, 708, 762
Van91I CCANNNNNTGG 1 cut(s) 192
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 3 cut(s) 50, 319, 674
XmnI GAANNNNTTC 2 cut(s) 525, 702
XspI CTAG 2 cut(s) 87, 453
ZrmI AGTACT 1 cut(s) 652
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.