MD05G1281700.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014072
Physical Location & Seq
Reverse (-)
41560454 .. 41561203
750 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1281700.v1.1.491

Sequence Viewer

Length: 750 bp
ATGGCCAAACTTCAAACAAATCTACAGCAAGATTTAGTGAAACCCTACAATTCCAGAGAATATTATCCTCACAAAGCCAAAGGAATATCCTTCTTAGCCTTTTTCTTCTCTATACTTATTTATATTTGCATCTTCTATATTTTTAACCTCTCCCTCTCAACTCTCTTTAAGAACTCCAAGTTTTGGTTTGCCATATCCAACACCCTCATCCTCATCATCGCCGCCGACTACGGCGCATTCTCTTCGGCTTCCAAAGACCAACAAGACCAATGTTACCAAGAGTACATGATGCATAGCCAAGCTCGAAGTGCTTCCTCATTTGTTTCTCAATACCCTCAAATTGTCAACAAAAGCAGTCCAAGGCAATTAGAGGCGGGAAACAATATGAAAACAAAGATTGAAGAAGTAATCCTCGTAGCTCAAAATACAGAAGTTATCCAAGAAAAGAGGGTAATCCACGTATCAAAAGGCGATGATCAGAATAAAGGTTGTGGAACTGGCAGAGAAAATGTTCAGGCAAAAACTTATCAGCGAAGTAAGTCTGCAAAAGCGAAAGGAGGGATGATCAATGAGAGCAAGAACACTCTAAGGAGGTCAGAGACAACTGATCAGAAGCGCAAACGAACTGCTGATGAAGACAATGAATTTTCGACCATGTCGGATGAAGAACTGAACAGAAGAGTTGAAGAGTTTATTCAGAGGTTCAATAGACAAATTAGGCTTCAATCAGCAGCTACAACCTTCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

250

Amino Acids

28.66

Weight (kDa)

9.38

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 221 - 243 1.6e-06 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30190 AT2G34610
fragaria_vesca FvH4_3g05300 FvH4_6g37202
malus_domestica MD05G1281700.v1.1 MD10G1260500.v1.1
prunus_persica Prupe.4G082900_v2.0.a1
pyrus_communis pycom10g21640
rosa_laevigata RLG00000032108
rosa_multiflora Rmu_ssc0000422.1_g000035
rosa_roxburghii Rroxscaffold_1G00062150
rosa_rugosa Rorug05G0018200
rosa_samantha Rh5AG113000 Rh5BG109700 Rh5CG121500 Rh5DG108800
rosa_wichuraiana Rw5G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 183
AciI CCGC 2 cut(s) 222, 374
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 644
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 183
AgsI TTSAA 5 cut(s) 14, 401, 686, 706, 725
AluBI AGCT 3 cut(s) 302, 419, 734
AluI AGCT 3 cut(s) 302, 419, 734
Alw26I GTCTC 1 cut(s) 593
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 731
ApoI RAATTY 1 cut(s) 644
Asp700I GAANNNNTTC 2 cut(s) 310, 510
AspLEI GCGC 2 cut(s) 236, 618
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 642
BbvI GCAGC 1 cut(s) 743
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BclI TGATCA 3 cut(s) 475, 564, 607
BcoDI GTCTC 1 cut(s) 593
BfmI CTRYAG 1 cut(s) 23
BisI GCNGC 2 cut(s) 222, 732
BlsI GCNGC 2 cut(s) 223, 733
BmsI GCATC 2 cut(s) 138, 279
BpiI GAAGAC 1 cut(s) 642
BsaAI YACGTR 1 cut(s) 460
BsaJI CCNNGG 1 cut(s) 359
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 502
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 3 cut(s) 207, 567, 667
BseLI CCNNNNNNNGG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 502
BseXI GCAGC 1 cut(s) 743
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 593
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 475, 564, 607
BspACI CCGC 2 cut(s) 222, 374
BspANI GGCC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 3 cut(s) 475, 564, 607
BssT1I CCWWGG 1 cut(s) 359
Bst6I CTCTTC 3 cut(s) 247, 673, 681
BstBAI YACGTR 1 cut(s) 460
BstDEI CTNAG 2 cut(s) 94, 587
BstF5I GGATG 3 cut(s) 207, 567, 667
BstHHI GCGC 2 cut(s) 236, 618
BstKTI GATC 3 cut(s) 478, 567, 610
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 3 cut(s) 475, 564, 607
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 743
BstV2I GAAGAC 1 cut(s) 642
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 2 cut(s) 202, 486
BtsCI GGATG 3 cut(s) 207, 567, 667
CfoI GCGC 2 cut(s) 236, 618
Csp6I GTAC 1 cut(s) 283
CviAII CATG 2 cut(s) 286, 655
CviJI RGCY 9 cut(s) 5, 77, 98, 248, 297, 302, 419, 721, 734
CviKI_1 RGCY 9 cut(s) 5, 77, 98, 248, 297, 302, 419, 721, 734
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 2 cut(s) 94, 587
DpnI GATC 3 cut(s) 477, 566, 609
DpnII GATC 3 cut(s) 475, 564, 607
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 247, 673, 681
EarI CTCTTC 3 cut(s) 247, 673, 681
Eco130I CCWWGG 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 359
EcoT22I ATGCAT 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 2 cut(s) 289, 658
FaiI YATR 8 cut(s) 113, 123, 138, 194, 287, 294, 386, 656
FatI CATG 2 cut(s) 285, 654
FauI CCCGC 1 cut(s) 367
FbaI TGATCA 3 cut(s) 475, 564, 607
Fnu4HI GCNGC 2 cut(s) 222, 732
FokI GGATG 3 cut(s) 194, 574, 674
Fsp4HI GCNGC 2 cut(s) 222, 732
GlaI GCGC 2 cut(s) 235, 617
GluI GCNGC 2 cut(s) 222, 732
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 2 cut(s) 236, 618
Hin1II CATG 2 cut(s) 289, 658
Hin6I GCGC 2 cut(s) 234, 616
HinP1I GCGC 2 cut(s) 234, 616
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 5 cut(s) 480, 598, 612, 661, 699
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 3 cut(s) 129, 292, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 94, 587
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 2 cut(s) 289, 658
HspAI GCGC 2 cut(s) 234, 616
Ksp22I TGATCA 3 cut(s) 475, 564, 607
Kzo9I GATC 3 cut(s) 475, 564, 607
LpnPI CCDG 3 cut(s) 67, 483, 500
Lsp1109I GCAGC 1 cut(s) 743
LweI GCATC 2 cut(s) 138, 279
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 1 cut(s) 272
MalI GATC 3 cut(s) 477, 566, 609
MboI GATC 3 cut(s) 475, 564, 607
MboII GAAGA 8 cut(s) 97, 124, 234, 413, 647, 677, 690, 698
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 49, 339, 365, 644, 714
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 222, 639
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 294
MroXI GAANNNNTTC 2 cut(s) 310, 510
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 144, 168
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 3 cut(s) 475, 564, 607
NlaIII CATG 2 cut(s) 289, 658
NsiI ATGCAT 1 cut(s) 294
PctI GAATGC 1 cut(s) 236
PdmI GAANNNNTTC 2 cut(s) 310, 510
PflFI GACNNNGTC 1 cut(s) 655
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 2 cut(s) 223, 733
Ppu21I YACGTR 1 cut(s) 460
PsyI GACNNNGTC 1 cut(s) 655
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 144, 168
SatI GCNGC 2 cut(s) 222, 732
Sau3AI GATC 3 cut(s) 475, 564, 607
SetI ASST 9 cut(s) 150, 304, 421, 462, 490, 596, 704, 736, 743
SfaNI GCATC 2 cut(s) 138, 279
SfcI CTRYAG 1 cut(s) 23
Sse9I AATT 5 cut(s) 49, 339, 365, 644, 714
SsiI CCGC 2 cut(s) 222, 374
SspI AATATT 1 cut(s) 62
StyI CCWWGG 1 cut(s) 359
TaiI ACGT 1 cut(s) 462
TaqI TCGA 2 cut(s) 304, 650
TasI AATT 5 cut(s) 49, 339, 365, 644, 714
TatI WGTACW 1 cut(s) 282
TauI GCSGC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 144, 168
Tru9I TTAA 2 cut(s) 144, 168
TseI GCWGC 1 cut(s) 731
TspDTI ATGAA 4 cut(s) 401, 648, 657, 678
Tth111I GACNNNGTC 1 cut(s) 655
Van91I CCANNNNNTGG 1 cut(s) 183
XapI RAATTY 1 cut(s) 644
XmnI GAANNNNTTC 2 cut(s) 310, 510
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.