Rh5CG121500

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014072
Physical Location & Seq
Forward (+)
10070701 .. 10071817
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG121500.1

Sequence Viewer

Length: 810 bp
ATGGCCAAAACACCACCAACTGCAGTCCAAGATTCGACGAAAGCCTACAAATTCGAAGATCATTATCCTCAAGAACCCTACAAATCTAGTGCAAGATCCTTGATTGCCTTCTTCTTCTCTATACTAATTTACACTTCCATCTTCTATATTTTCAACCTCTCTCCTTCCGCTCTCTTCTACAACACCAAGTTTTGGTTTGCGATATCCAACACCCTGATTCTTATCATTGCAGCCGACTACTCTTCTTCTAAAGACAAGCACGACCAGATTAATTACCAAGAAGAGTATATGATGCATAGGCAAGCTCAAACTACTTCCTCATTTGTTTTGGAATACCCTCGTGAAATAGTCAAGGAAACCATTATTGATCACCAAGTTGCACGTCAAAATATACGAAACCCAGAAAACAGGCAAATTGTGCTTAAAGTCGACGAGCATGATGAAAAGCCTAGTGTTGATGATATTGATGTCCATGAAAAGAAAATAGTCCACGTACAGTCAAAAGGTAGTAAGAAAGAAAATATTCAAGCAAAAACTTACAAACGAAGTAAGTCGGAGGAGGTGAAAAGAGTGGTGATCGACGAATGCAAGAGCAATATTATAAGGAGGTCGGAGACAATGGAGAAGCACGAAGAAACTCAAGTAAGTACTCCGGAAGAAGTTATTGATGAATTCTCAACCATGTCAGATGAAGAATTGATTCAACTGAACAGAAGATGTGAAGAGTTTATTCAAAGGTTTAATCAACAAATTAGGCATCAATCAGTTGCAGACAGATCGAAGGCCCAAAAAACCTACCATCATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

269

Amino Acids

31.73

Weight (kDa)

6.43

Isoelectric Point (pI)

64.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30190 AT2G34610
fragaria_vesca FvH4_3g05300 FvH4_6g37202
malus_domestica MD05G1281700.v1.1 MD10G1260500.v1.1
prunus_persica Prupe.4G082900_v2.0.a1
pyrus_communis pycom10g21640
rosa_laevigata RLG00000032108
rosa_multiflora Rmu_ssc0000422.1_g000035
rosa_roxburghii Rroxscaffold_1G00062150
rosa_rugosa Rorug05G0018200
rosa_samantha Rh5AG113000 Rh5BG109700 Rh5CG121500 Rh5DG108800
rosa_wichuraiana Rw5G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 192
AccBSI CCGCTC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 429
AccIII TCCGGA 1 cut(s) 652
AciI CCGC 1 cut(s) 168
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 50, 671
AfaI GTAC 2 cut(s) 495, 649
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 4 cut(s) 154, 527, 704, 734
AjiI CACGTC 1 cut(s) 383
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 1 cut(s) 90
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 2 cut(s) 3, 783
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 2 cut(s) 50, 671
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 2 cut(s) 522, 699
AspS9I GGNCC 1 cut(s) 784
AsuHPI GGTGA 3 cut(s) 362, 574, 586
AsuII TTCGAA 1 cut(s) 54
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 339
BbvI GCAGC 1 cut(s) 242
BccI CCATC 2 cut(s) 146, 807
BcgI CGANNNNNNTGC 2 cut(s) 759, 793
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 2 cut(s) 87, 450
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 649
BmgBI CACGTC 1 cut(s) 383
BmgT120I GGNCC 1 cut(s) 784
BmsI GCATC 2 cut(s) 282, 766
Bpu14I TTCGAA 1 cut(s) 54
BpuEI CTTGAG 2 cut(s) 54, 624
BsaAI YACGTR 1 cut(s) 493
BsaBI GATNNNNATC 2 cut(s) 63, 221
BsaWI WCCGGW 1 cut(s) 652
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 2 cut(s) 63, 221
BseAI TCCGGA 1 cut(s) 652
BseJI GATNNNNATC 2 cut(s) 63, 221
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 2 cut(s) 5, 785
BsiSI CCGG 1 cut(s) 653
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 608
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 2 cut(s) 5, 785
Bsp119I TTCGAA 1 cut(s) 54
Bsp13I TCCGGA 1 cut(s) 652
Bsp143I GATC 5 cut(s) 58, 95, 367, 576, 776
BspACI CCGC 1 cut(s) 168
BspANI GGCC 2 cut(s) 5, 785
BspEI TCCGGA 1 cut(s) 652
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 225
BssMI GATC 5 cut(s) 58, 95, 367, 576, 776
BssSI CACGAG 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 498
Bst6I CTCTTC 4 cut(s) 179, 247, 276, 717
BstAPI GCANNNNNTGC 1 cut(s) 418
BstBAI YACGTR 1 cut(s) 493
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 303
BstKTI GATC 5 cut(s) 61, 98, 370, 579, 779
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 5 cut(s) 58, 95, 367, 576, 776
BstMWI GCNNNNNNNGC 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 2 cut(s) 5, 785
BtrI CACGTC 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 784
Csp6I GTAC 2 cut(s) 494, 648
CviAII CATG 4 cut(s) 437, 473, 682, 803
CviJI RGCY 6 cut(s) 5, 44, 233, 305, 448, 785
CviKI_1 RGCY 6 cut(s) 5, 44, 233, 305, 448, 785
CviQI GTAC 2 cut(s) 494, 648
DpnI GATC 5 cut(s) 60, 97, 369, 578, 778
DpnII GATC 5 cut(s) 58, 95, 367, 576, 776
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 179, 247, 276, 717
EarI CTCTTC 4 cut(s) 179, 247, 276, 717
Eco32I GATATC 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 671
EcoRV GATATC 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 297
FaeI CATG 4 cut(s) 440, 476, 685, 806
FatI CATG 4 cut(s) 436, 472, 681, 802
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 87, 450
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 5, 785
HapII CCGG 1 cut(s) 653
Hin1II CATG 4 cut(s) 440, 476, 685, 806
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 3 cut(s) 32, 217, 700
HpaII CCGG 1 cut(s) 653
HphI GGTGA 3 cut(s) 362, 574, 586
Hpy166II GTNNAC 2 cut(s) 430, 490
Hpy188I TCNGA 3 cut(s) 556, 613, 688
Hpy188III TCNNGA 3 cut(s) 71, 341, 653
Hpy8I GTNNAC 2 cut(s) 430, 490
Hpy99I CGWCG 3 cut(s) 40, 434, 584
HpyAV CCTTC 3 cut(s) 118, 174, 775
HpyCH4III ACNGT 1 cut(s) 498
HpyCH4IV ACGT 2 cut(s) 382, 492
HpyCH4V TGCA 7 cut(s) 23, 92, 230, 295, 380, 588, 770
HpyF10VI GCNNNNNNNGC 1 cut(s) 418
HpySE526I ACGT 2 cut(s) 382, 492
Hsp92II CATG 4 cut(s) 440, 476, 685, 806
Kpn2I TCCGGA 1 cut(s) 652
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 5 cut(s) 58, 95, 367, 576, 776
LpnPI CCDG 5 cut(s) 227, 278, 394, 414, 666
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 2 cut(s) 282, 766
MaeI CTAG 2 cut(s) 87, 450
MaeII ACGT 2 cut(s) 382, 492
MalI GATC 5 cut(s) 60, 97, 369, 578, 778
MbiI CCGCTC 1 cut(s) 170
MboI GATC 5 cut(s) 58, 95, 367, 576, 776
MflI RGATCY 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 50, 126, 271, 414, 671, 695, 750
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 231, 534, 591
MnlI CCTC 7 cut(s) 78, 167, 328, 348, 550, 553, 600
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 297
MroI TCCGGA 1 cut(s) 652
MroXI GAANNNNTTC 2 cut(s) 522, 699
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 270, 423, 741
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 653
Mva1269I GAATGC 1 cut(s) 590
MwoI GCNNNNNNNGC 1 cut(s) 418
NdeII GATC 5 cut(s) 58, 95, 367, 576, 776
NlaIII CATG 4 cut(s) 440, 476, 685, 806
NsiI ATGCAT 1 cut(s) 297
NspV TTCGAA 1 cut(s) 54
PctI GAATGC 1 cut(s) 590
PdmI GAANNNNTTC 2 cut(s) 522, 699
PfeI GAWTC 3 cut(s) 32, 217, 700
PflMI CCANNNNNTGG 1 cut(s) 192
PkrI GCNGC 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 493
PshBI ATTAAT 1 cut(s) 270
PsiI TTATAA 1 cut(s) 602
PspPI GGNCC 1 cut(s) 784
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 95
RsaI GTAC 2 cut(s) 495, 649
RsaNI GTAC 2 cut(s) 494, 648
SalI GTCGAC 1 cut(s) 428
SaqAI TTAA 3 cut(s) 270, 423, 741
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 5 cut(s) 58, 95, 367, 576, 776
Sau96I GGNCC 1 cut(s) 784
ScaI AGTACT 1 cut(s) 649
SetI ASST 9 cut(s) 159, 307, 385, 495, 508, 564, 611, 740, 797
SfaNI GCATC 2 cut(s) 282, 766
SfcI CTRYAG 1 cut(s) 21
SfuI TTCGAA 1 cut(s) 54
SmlI CTYRAG 2 cut(s) 69, 639
SmoI CTYRAG 2 cut(s) 69, 639
Sse9I AATT 7 cut(s) 50, 126, 271, 414, 671, 695, 750
SsiI CCGC 1 cut(s) 168
SspI AATATT 2 cut(s) 523, 598
SspMI CTAG 2 cut(s) 87, 450
TaaI ACNGT 1 cut(s) 498
TaiI ACGT 2 cut(s) 385, 495
TaqI TCGA 5 cut(s) 35, 54, 429, 579, 779
TasI AATT 7 cut(s) 50, 126, 271, 414, 671, 695, 750
TatI WGTACW 1 cut(s) 647
TfiI GAWTC 3 cut(s) 32, 217, 700
Tru1I TTAA 3 cut(s) 270, 423, 741
Tru9I TTAA 3 cut(s) 270, 423, 741
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 4 cut(s) 456, 489, 684, 705
Van91I CCANNNNNTGG 1 cut(s) 192
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 2 cut(s) 50, 671
XmiI GTMKAC 1 cut(s) 429
XmnI GAANNNNTTC 2 cut(s) 522, 699
XspI CTAG 2 cut(s) 87, 450
ZrmI AGTACT 1 cut(s) 649
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.