Rroxscaffold_1G00062150

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014072
Physical Location & Seq
Reverse (-)
84171781 .. 84172596
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062150.1

Sequence Viewer

Length: 816 bp
ATGGCCAAAACACCACCAACTGCAGTCCAAGATTCGACGAAAGCCTACAAATTCGAAGATCATTATCCTCAAGAACCCTACAAATCTAGTGCAAGATCCTTGATTGCCTTCTTCTTCTCTATACTAATTTACACTTCGATCTTCTATATTTTCAACCTCTCTCCTTCCACTCTCTTCTACAACACCAAGTTTTGGTTTGCGATATCCAACACCCTGATTCTTATCATTGCAGCCGACTACTCTTCTTCTAAAGACAAGCGCGACCAGATTAATTACCAAGAAGAGTATATGATGCACAGGCAAGCTCAAACTACTTCCTCATTTGTTTTGGAATACCCTCGTGAAATAGTCAAGGAAACCATTATTGATCACCAAGTTGCACGTCAAAATATACGAAACCCAGAAAACAGGCAAATTGTGCTTAAAGACGAGCATGATGAAAAGCCTAGTGTTGATGATATTGATGTCCAAGAAAAGAAAATAGTCCACGTACAGTCAAAAGGTAGTAAGAAAGAAAATATTCAAGCAAAAACTTACAAACGAAGTAAGTCGGAGGAGGTGAAAAGCGTGGTGATCGACGAATGCAAGAGCAATATTATAAGGAGGTCGGAGACAATGGAGAAGCACGAAGAAACTCAAGTAAGTACTCCGGAAGAAGTTATTGATGAATTCTCAACCATGTCAGATGAAGAATTGATTCAACTGAACAGAAGATGTGAAGAGTTTATTCAAAGGTTTAATCAACAAATTAGGCATCAATCAGTTGCAGACAGAAGGCCCAAAAAACCTACCATCATGTCTAAAGTTCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

271

Amino Acids

31.93

Weight (kDa)

6.42

Isoelectric Point (pI)

67.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30190 AT2G34610
fragaria_vesca FvH4_3g05300 FvH4_6g37202
malus_domestica MD05G1281700.v1.1 MD10G1260500.v1.1
prunus_persica Prupe.4G082900_v2.0.a1
pyrus_communis pycom10g21640
rosa_laevigata RLG00000032108
rosa_multiflora Rmu_ssc0000422.1_g000035
rosa_roxburghii Rroxscaffold_1G00062150
rosa_rugosa Rorug05G0018200
rosa_samantha Rh5AG113000 Rh5BG109700 Rh5CG121500 Rh5DG108800
rosa_wichuraiana Rw5G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
AccB7I CCANNNNNTGG 1 cut(s) 192
AccII CGCG 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 649
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 50, 668
AfaI GTAC 2 cut(s) 492, 646
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 4 cut(s) 154, 524, 701, 731
AjiI CACGTC 1 cut(s) 383
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 605
AlwI GGATC 1 cut(s) 90
Aor13HI TCCGGA 1 cut(s) 649
AoxI GGCC 2 cut(s) 3, 776
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 2 cut(s) 50, 668
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 2 cut(s) 519, 696
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 777
AsuHPI GGTGA 3 cut(s) 362, 571, 583
AsuII TTCGAA 1 cut(s) 54
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 339
BbvI GCAGC 1 cut(s) 242
BccI CCATC 1 cut(s) 800
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 605
BfaI CTAG 2 cut(s) 87, 447
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 646
BmgBI CACGTC 1 cut(s) 383
BmgT120I GGNCC 1 cut(s) 777
BmsI GCATC 2 cut(s) 282, 763
Bpu14I TTCGAA 1 cut(s) 54
BpuEI CTTGAG 2 cut(s) 54, 621
BsaAI YACGTR 1 cut(s) 490
BsaBI GATNNNNATC 2 cut(s) 63, 221
BsaWI WCCGGW 1 cut(s) 649
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 2 cut(s) 63, 221
BseAI TCCGGA 1 cut(s) 649
BseJI GATNNNNATC 2 cut(s) 63, 221
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 1 cut(s) 242
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 5, 778
BsiSI CCGG 1 cut(s) 650
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 605
BsmI GAATGC 1 cut(s) 587
BsnI GGCC 2 cut(s) 5, 778
Bsp119I TTCGAA 1 cut(s) 54
Bsp13I TCCGGA 1 cut(s) 649
Bsp143I GATC 5 cut(s) 58, 95, 138, 367, 573
BspANI GGCC 2 cut(s) 5, 778
BspEI TCCGGA 1 cut(s) 649
BspFNI CGCG 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 225
BssMI GATC 5 cut(s) 58, 95, 138, 367, 573
BssSI CACGAG 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 495
Bst6I CTCTTC 4 cut(s) 179, 247, 276, 714
BstAPI GCANNNNNTGC 1 cut(s) 418
BstBAI YACGTR 1 cut(s) 490
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 303
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 5 cut(s) 61, 98, 141, 370, 576
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 5 cut(s) 58, 95, 138, 367, 573
BstMWI GCNNNNNNNGC 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 2 cut(s) 5, 778
BtrI CACGTC 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 777
Csp6I GTAC 2 cut(s) 491, 645
CviAII CATG 3 cut(s) 434, 679, 796
CviJI RGCY 6 cut(s) 5, 44, 233, 305, 445, 778
CviKI_1 RGCY 6 cut(s) 5, 44, 233, 305, 445, 778
CviQI GTAC 2 cut(s) 491, 645
DpnI GATC 5 cut(s) 60, 97, 140, 369, 575
DpnII GATC 5 cut(s) 58, 95, 138, 367, 573
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 179, 247, 276, 714
EarI CTCTTC 4 cut(s) 179, 247, 276, 714
Eco32I GATATC 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 668
EcoRV GATATC 1 cut(s) 204
FaeI CATG 3 cut(s) 437, 682, 799
FaiI YATR 9 cut(s) 122, 147, 288, 290, 392, 435, 599, 680, 797
FatI CATG 3 cut(s) 433, 678, 795
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 87, 447
GlaI GCGC 1 cut(s) 260
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 5, 778
HapII CCGG 1 cut(s) 650
HhaI GCGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 437, 682, 799
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HinfI GANTC 3 cut(s) 32, 217, 697
HpaII CCGG 1 cut(s) 650
HphI GGTGA 3 cut(s) 362, 571, 583
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 3 cut(s) 553, 610, 685
Hpy188III TCNNGA 4 cut(s) 71, 341, 650, 809
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 2 cut(s) 40, 581
HpyAV CCTTC 3 cut(s) 118, 174, 768
HpyCH4III ACNGT 1 cut(s) 495
HpyCH4IV ACGT 2 cut(s) 382, 489
HpyCH4V TGCA 7 cut(s) 23, 92, 230, 295, 380, 585, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 418
HpySE526I ACGT 2 cut(s) 382, 489
Hsp92II CATG 3 cut(s) 437, 682, 799
HspAI GCGC 1 cut(s) 259
Kpn2I TCCGGA 1 cut(s) 649
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 5 cut(s) 58, 95, 138, 367, 573
LpnPI CCDG 6 cut(s) 227, 278, 283, 394, 414, 663
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 2 cut(s) 282, 763
MaeI CTAG 2 cut(s) 87, 447
MaeII ACGT 2 cut(s) 382, 489
MalI GATC 5 cut(s) 60, 97, 140, 369, 575
MboI GATC 5 cut(s) 58, 95, 138, 367, 573
MflI RGATCY 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 50, 126, 271, 414, 668, 692, 747
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 231, 531, 588
MnlI CCTC 7 cut(s) 78, 167, 328, 348, 547, 550, 597
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 649
MroXI GAANNNNTTC 2 cut(s) 519, 696
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 270, 423, 738
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 650
Mva1269I GAATGC 1 cut(s) 587
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 418
NdeII GATC 5 cut(s) 58, 95, 138, 367, 573
NlaIII CATG 3 cut(s) 437, 682, 799
NspV TTCGAA 1 cut(s) 54
PctI GAATGC 1 cut(s) 587
PdmI GAANNNNTTC 2 cut(s) 519, 696
PfeI GAWTC 3 cut(s) 32, 217, 697
PflMI CCANNNNNTGG 1 cut(s) 192
PkrI GCNGC 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 490
PshBI ATTAAT 1 cut(s) 270
PsiI TTATAA 1 cut(s) 599
PspPI GGNCC 1 cut(s) 777
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 95
RsaI GTAC 2 cut(s) 492, 646
RsaNI GTAC 2 cut(s) 491, 645
SaqAI TTAA 3 cut(s) 270, 423, 738
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 5 cut(s) 58, 95, 138, 367, 573
Sau96I GGNCC 1 cut(s) 777
ScaI AGTACT 1 cut(s) 646
SetI ASST 9 cut(s) 159, 307, 385, 492, 505, 561, 608, 737, 790
SfaNI GCATC 2 cut(s) 282, 763
SfcI CTRYAG 1 cut(s) 21
SfuI TTCGAA 1 cut(s) 54
SmlI CTYRAG 3 cut(s) 69, 636, 809
SmoI CTYRAG 3 cut(s) 69, 636, 809
Sse9I AATT 7 cut(s) 50, 126, 271, 414, 668, 692, 747
SspI AATATT 2 cut(s) 520, 595
SspMI CTAG 2 cut(s) 87, 447
TaaI ACNGT 1 cut(s) 495
TaiI ACGT 2 cut(s) 385, 492
TaqI TCGA 4 cut(s) 35, 54, 137, 576
TasI AATT 7 cut(s) 50, 126, 271, 414, 668, 692, 747
TatI WGTACW 1 cut(s) 644
TfiI GAWTC 3 cut(s) 32, 217, 697
Tru1I TTAA 3 cut(s) 270, 423, 738
Tru9I TTAA 3 cut(s) 270, 423, 738
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 453, 681, 702
Van91I CCANNNNNTGG 1 cut(s) 192
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 2 cut(s) 50, 668
XmnI GAANNNNTTC 2 cut(s) 519, 696
XspI CTAG 2 cut(s) 87, 447
ZrmI AGTACT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.