Prupe.4G082900_v2.0.a1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014072
Physical Location & Seq
Forward (+)
4049129 .. 4050174
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G082900.1

Sequence Viewer

Length: 771 bp
ATGGCCAAACTACCATCAACAAATCTTGTGCAAGATTCAATGAAACCCTACAAACCCAAAGAATATTACCCTGAAAAAGCCAAGGGCATATCCTTCTTGGCCTTTTTCTTCTCCACATGCATTTACATTTCCATCTTCTACATCTTCAACCTCTCTCTCTCCACTCTCTTCCACAACACCAAGTTCTGGTTTGCCATATCCAACACTCTCATCCTCATCATTGCAGCTGACTATGGCGCCTTCTCTTCCTCCAAAGATAATATACAAGACCAACATCTTTACCAAGAGTACATGATCCACCGCCAAGCTCGAAGTGTGTCCTCATTTGTTTCTCAATACCCTGAAATAGCTTTCAAGAAAAGCAGCTGTCCCAATAAGCAATCAGAGGTGGACGTGGACGACATGAAAGCAAAGAATGAAGAAGTGGCAGACACTCAAAATAAAGAAGTTGTCCAAGAAAAGAGTGTCGTCCACGTGTCGAAAGGCGATGATCAGAACAAAGGTTGCGGCAGAGAAAATGTTGCAGCAAAAACTTACCAGCGAAGTAAGTCTGAGAAAACAAAGACAAAGGGAGCTGTGATCGATGAGAGGAAGAAGGATATTTTGAAGAGGTCAGAGGATGAGAAGAAGTACGAGCCAAATACTGTTGAAGACAATGAATTTTCGGTCATGTCAGATGAAGAATTGAACAGGAGAATTGAAGAATTTATTCAGAGGTTTAACAAGCAGATTAGGCTTCAATCAGCAGCTACAAACTCCCACCAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

257

Amino Acids

29.57

Weight (kDa)

8.23

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30190 AT2G34610
fragaria_vesca FvH4_3g05300 FvH4_6g37202
malus_domestica MD05G1281700.v1.1 MD10G1260500.v1.1
prunus_persica Prupe.4G082900_v2.0.a1
pyrus_communis pycom10g21640
rosa_laevigata RLG00000032108
rosa_multiflora Rmu_ssc0000422.1_g000035
rosa_roxburghii Rroxscaffold_1G00062150
rosa_rugosa Rorug05G0018200
rosa_samantha Rh5AG113000 Rh5BG109700 Rh5CG121500 Rh5DG108800
rosa_wichuraiana Rw5G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 186
AciI CCGC 2 cut(s) 301, 507
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 659, 704
AcvI CACGTG 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 2 cut(s) 290, 632
AfiI CCNNNNNNNGG 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 8 cut(s) 39, 148, 355, 607, 650, 688, 701, 740
AjiI CACGTC 1 cut(s) 394
AluBI AGCT 6 cut(s) 227, 308, 350, 366, 575, 749
AluI AGCT 6 cut(s) 227, 308, 350, 366, 575, 749
AlwI GGATC 1 cut(s) 289
AoxI GGCC 2 cut(s) 3, 99
ApeKI GCWGC 4 cut(s) 224, 363, 524, 746
ApoI RAATTY 2 cut(s) 659, 704
Asp700I GAANNNNTTC 1 cut(s) 708
AspLEI GCGC 1 cut(s) 239
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 236
BbrPI CACGTG 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 657
BbvI GCAGC 4 cut(s) 236, 375, 536, 758
BccI CCATC 2 cut(s) 22, 140
BclI TGATCA 1 cut(s) 490
BfaI CTAG 1 cut(s) 769
BfoI RGCGCY 1 cut(s) 240
BisI GCNGC 5 cut(s) 225, 364, 508, 525, 747
BlsI GCNGC 5 cut(s) 226, 365, 509, 526, 748
BmgBI CACGTC 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 657
Bsa29I ATCGAT 1 cut(s) 582
BsaAI YACGTR 1 cut(s) 475
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 219
BseCI ATCGAT 1 cut(s) 582
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 210, 625
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 543
BseXI GCAGC 4 cut(s) 236, 375, 536, 758
BshFI GGCC 2 cut(s) 5, 101
BshNI GGYRCC 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 582
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 2 cut(s) 5, 101
Bsp143I GATC 3 cut(s) 294, 490, 579
BspACI CCGC 2 cut(s) 301, 507
BspANI GGCC 2 cut(s) 5, 101
BspCNI CTCAG 1 cut(s) 544
BspDI ATCGAT 1 cut(s) 582
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 294, 490, 579
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 646
Bst6I CTCTTC 3 cut(s) 173, 250, 602
BstACI GRCGYC 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 475
BstDEI CTNAG 1 cut(s) 552
BstF5I GGATG 2 cut(s) 210, 625
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 297, 493, 582
BstMBI GATC 3 cut(s) 294, 490, 579
BstMWI GCNNNNNNNGC 1 cut(s) 733
BstNSI RCATGY 1 cut(s) 120
BstV1I GCAGC 4 cut(s) 236, 375, 536, 758
BstV2I GAAGAC 1 cut(s) 657
Bsu15I ATCGAT 1 cut(s) 582
BsuRI GGCC 2 cut(s) 5, 101
BsuTUI ATCGAT 1 cut(s) 582
BtgZI GCGATG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 2 cut(s) 210, 625
CfoI GCGC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 582
Csp6I GTAC 2 cut(s) 289, 631
CviAII CATG 4 cut(s) 117, 292, 403, 670
CviQI GTAC 2 cut(s) 289, 631
DdeI CTNAG 1 cut(s) 552
DinI GGCGCC 1 cut(s) 238
DpnI GATC 3 cut(s) 296, 492, 581
DpnII GATC 3 cut(s) 294, 490, 579
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 173, 250, 602
EarI CTCTTC 3 cut(s) 173, 250, 602
Eco130I CCWWGG 1 cut(s) 81
Eco72I CACGTG 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 122
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 4 cut(s) 120, 295, 406, 673
FaiI YATR 8 cut(s) 89, 118, 197, 234, 263, 293, 404, 671
FaqI GGGAC 1 cut(s) 354
FatI CATG 4 cut(s) 116, 291, 402, 669
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 5 cut(s) 225, 364, 508, 525, 747
FokI GGATG 2 cut(s) 197, 632
Fsp4HI GCNGC 5 cut(s) 225, 364, 508, 525, 747
FspBI CTAG 1 cut(s) 769
GlaI GCGC 1 cut(s) 238
GluI GCNGC 5 cut(s) 225, 364, 508, 525, 747
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 2 cut(s) 5, 101
HhaI GCGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 4 cut(s) 120, 295, 406, 673
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 1 cut(s) 35
Hpy166II GTNNAC 3 cut(s) 391, 397, 472
Hpy188I TCNGA 6 cut(s) 385, 495, 553, 616, 676, 714
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 3 cut(s) 391, 397, 472
HpyAV CCTTC 3 cut(s) 103, 250, 589
HpyCH4III ACNGT 1 cut(s) 646
HpyCH4IV ACGT 2 cut(s) 393, 474
HpyCH4V TGCA 4 cut(s) 31, 120, 224, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 733
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 2 cut(s) 393, 474
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 4 cut(s) 120, 295, 406, 673
HspAI GCGC 1 cut(s) 237
KasI GGCGCC 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 3 cut(s) 294, 490, 579
LmnI GCTCC 1 cut(s) 572
LpnPI CCDG 5 cut(s) 84, 172, 354, 551, 676
Lsp1109I GCAGC 4 cut(s) 236, 375, 536, 758
MaeI CTAG 1 cut(s) 769
MaeII ACGT 2 cut(s) 393, 474
MalI GATC 3 cut(s) 296, 492, 581
MboI GATC 3 cut(s) 294, 490, 579
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 659, 683, 696, 704
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 9 cut(s) 161, 224, 259, 331, 379, 582, 603, 610, 708
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 708
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 720
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 227, 366
MwoI GCNNNNNNNGC 1 cut(s) 733
NarI GGCGCC 1 cut(s) 237
NdeII GATC 3 cut(s) 294, 490, 579
NlaIII CATG 4 cut(s) 120, 295, 406, 673
NlaIV GGNNCC 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 122
NspI RCATGY 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 186
PkrI GCNGC 5 cut(s) 226, 365, 509, 526, 748
PluTI GGCGCC 1 cut(s) 240
PmaCI CACGTG 1 cut(s) 475
PmlI CACGTG 1 cut(s) 475
Ppu21I YACGTR 1 cut(s) 475
PspCI CACGTG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 238
PvuII CAGCTG 2 cut(s) 227, 366
RsaI GTAC 2 cut(s) 290, 632
RsaNI GTAC 2 cut(s) 289, 631
SaqAI TTAA 1 cut(s) 720
SatI GCNGC 5 cut(s) 225, 364, 508, 525, 747
Sau3AI GATC 3 cut(s) 294, 490, 579
SfoI GGCGCC 1 cut(s) 238
Sse9I AATT 4 cut(s) 659, 683, 696, 704
SsiI CCGC 2 cut(s) 301, 507
SspDI GGCGCC 1 cut(s) 236
SspI AATATT 1 cut(s) 65
SspMI CTAG 1 cut(s) 769
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 646
TaiI ACGT 2 cut(s) 396, 477
TaqI TCGA 3 cut(s) 310, 479, 582
TaqII GACCGA 1 cut(s) 655
TasI AATT 4 cut(s) 659, 683, 696, 704
TatI WGTACW 1 cut(s) 288
TauI GCSGC 1 cut(s) 510
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TseI GCWGC 4 cut(s) 224, 363, 524, 746
TspDTI ATGAA 5 cut(s) 56, 419, 432, 672, 693
Van91I CCANNNNNTGG 1 cut(s) 186
XapI RAATTY 2 cut(s) 659, 704
XceI RCATGY 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 1 cut(s) 769
Zsp2I ATGCAT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.