Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014558

Physical Location & Seq

Genomic Coordinates Forward (+)

10960908 .. 10963231

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30825.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGATACTATTGCAGTCACATTCAAGGTTTCTTCTTCAAACGCTATTGACGCGAGCTCAAAATCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCATGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTTTCGGTTTCGTTACCAAATCCACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAACCACTTACGGGACAGGTTTTCAAATACTTGATCCTCCTAGAGATGGTTTTAGTTTAACCCTCAAGCTCAATTTCTCTAAAGTTCGTCCTGATGAAGAGTTATTAACGAAGCTAGCTTCCATTAGAGAAGTGGTGATGGGTGCACCGTTAAAAATCATTTTCAAGCATTTAGCTTCAAGGACGGTTGCTCCTGAGCTGGATAGGCTTGTAGCAATTATGCATAGACCTAACGAGACGTTTTTCCTCGTGCCTCAGGCGGATAAAGTCACTGTGGCATTTCCTATGAGATTTAAAGACTCCGTAGACACGATTCTGGCGACTTCTTTCCTTAAGGAATTTGTAGAGGCGAGGCGTGCTGCTGCGCTTAATACTGCTCCTTCTTGTTCTTGGTCTCCAACCGCACCGCAGGAATTAGAGGGAGCTCCTAAAGAAACACTATCCGCTAATGCCGGTTTTGTAACTTTTGTCATTTTTCCTCGGCATGTGGAAGGGAAAAAGCTCGATCGTACTGTCTGGAATTTATCGACCTTTCATGCTTATGTTAGTTATCACGTCAAGTTCTCAGAGGGATTTATGCACACCAGGATGCGGCGTCGCGTGGAATCTATGATTCAGGCTCTGGATCAAGCTAAGCCATTGGAGAAAACAAGATCGATGAACAACAAGTCATTTAAACGGCTAGGACTCAACGAGGTCAATCACACCAACTCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

318

Amino Acids

36.04

Weight (kDa)

9.42

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	74 - 292	1.1e-49	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30825
fragaria_vesca	FvH4_3g13510 FvH4_3g13510
malus_domestica	MD10G1221300.v1.1
prunus_persica	Prupe.4G123300_v2.0.a1 Prupe.4G123300_v2.0.a1
pyrus_communis	pycom10g18690
rosa_chinensis	RchiOBHm_Chr5g0022461 RchiOBHm_Chr6g0246611 RchiOBHm_Chr6g0255501
rosa_laevigata	RLG00000032661
rosa_multiflora	Rmu_sc0005639.1_g000004
rosa_roxburghii	Rroxscaffold_1G00056590
rosa_rugosa	Rorug05G0073700 Rorug05G0073800
rosa_samantha	Rh5AG160700
rosa_wichuraiana	Rw5G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	543
AccII	CGCG	2 cut(s)	52, 837
AciI	CCGC	5 cut(s)	497, 639, 644, 681, 829
AclWI	GGATC	2 cut(s)	266, 870
AcsI	RAATTY	3 cut(s)	101, 575, 757
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	832
AfaI	GTAC	1 cut(s)	748
AfiI	CCNNNNNNNGG	4 cut(s)	127, 249, 284, 828
AflII	CTTAAG	1 cut(s)	569
AgsI	TTSAA	6 cut(s)	24, 38, 101, 263, 403, 417
AjiI	CACGTC	1 cut(s)	793
AjnI	CCWGG	1 cut(s)	821
Alw21I	GWGCWC	3 cut(s)	58, 385, 664
Alw26I	GTCTC	2 cut(s)	467, 636
Alw44I	GTGCAC	1 cut(s)	381
AlwI	GGATC	2 cut(s)	266, 870
AlwNI	CAGNNNCTG	1 cut(s)	859
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	596, 599
ApoI	RAATTY	3 cut(s)	101, 575, 757
AspLEI	GCGC	1 cut(s)	604
AsuHPI	GGTGA	2 cut(s)	142, 385
AsuNHI	GCTAGC	1 cut(s)	352
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	385
BanII	GRGCYC	2 cut(s)	58, 664
BauI	CACGAG	1 cut(s)	485
Bbv12I	GWGCWC	3 cut(s)	58, 385, 664
BbvI	GCAGC	2 cut(s)	583, 586
BccI	CCATC	3 cut(s)	200, 278, 370
BceAI	ACGGC	1 cut(s)	932
BciT130I	CCWGG	1 cut(s)	823
BcoDI	GTCTC	2 cut(s)	467, 636
BfaI	CTAG	4 cut(s)	83, 279, 353, 920
BfmI	CTRYAG	1 cut(s)	225
BfrI	CTTAAG	1 cut(s)	569
BisI	GCNGC	3 cut(s)	597, 600, 830
BlpI	GCTNAGC	1 cut(s)	870
BlsI	GCNGC	3 cut(s)	598, 601, 831
Bme1390I	CCNGG	1 cut(s)	823
BmgBI	CACGTC	1 cut(s)	793
BmrFI	CCNGG	1 cut(s)	823
BmsI	GCATC	1 cut(s)	816
BmtI	GCTAGC	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	870
BpuEI	CTTGAG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	893
BsaHI	GRCGYC	1 cut(s)	832
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	1 cut(s)	716
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 249, 284, 828
Bse118I	RCCGGY	1 cut(s)	689
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	823
BseCI	ATCGAT	1 cut(s)	893
BseDI	CCNNGG	1 cut(s)	716
BseGI	GGATG	1 cut(s)	831
BseLI	CCNNNNNNNGG	4 cut(s)	127, 249, 284, 828
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	3 cut(s)	423, 506, 816
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	583, 586
Bsh1236I	CGCG	2 cut(s)	52, 837
Bsh1285I	CGRYCG	1 cut(s)	745
BshVI	ATCGAT	1 cut(s)	893
BsiEI	CGRYCG	1 cut(s)	745
BsiHKAI	GWGCWC	3 cut(s)	58, 385, 664
BsiSI	CCGG	1 cut(s)	690
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	4 cut(s)	127, 249, 284, 828
BsmAI	GTCTC	2 cut(s)	467, 636
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	636
Bsp1286I	GDGCHC	3 cut(s)	58, 385, 664
Bsp143I	GATC	4 cut(s)	271, 742, 862, 890
Bsp1720I	GCTNAGC	1 cut(s)	870
BspACI	CCGC	5 cut(s)	497, 639, 644, 681, 829
BspCNI	CTCAG	3 cut(s)	424, 505, 815
BspDI	ATCGAT	1 cut(s)	893
BspFNI	CGCG	2 cut(s)	52, 837
BspOI	GCTAGC	1 cut(s)	356
BspPI	GGATC	2 cut(s)	266, 870
BspTI	CTTAAG	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	689
BssAI	RCCGGY	1 cut(s)	689
BssECI	CCNNGG	1 cut(s)	716
BssMI	GATC	4 cut(s)	271, 742, 862, 890
BssNI	GRCGYC	1 cut(s)	832
BssSI	CACGAG	1 cut(s)	485
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	1 cut(s)	823
Bst4CI	ACNGT	4 cut(s)	387, 424, 511, 751
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	832
BstAFI	CTTAAG	1 cut(s)	569
BstC8I	GCNNGC	3 cut(s)	54, 354, 594
BstDEI	CTNAG	4 cut(s)	432, 492, 802, 870
BstF5I	GGATG	1 cut(s)	831
BstFNI	CGCG	2 cut(s)	52, 837
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	4 cut(s)	274, 745, 865, 893
BstMAI	GTCTC	2 cut(s)	467, 636
BstMBI	GATC	4 cut(s)	271, 742, 862, 890
BstMCI	CGRYCG	1 cut(s)	745
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 230, 442, 593
BstNI	CCWGG	1 cut(s)	823
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	1 cut(s)	821
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	385
BstUI	CGCG	2 cut(s)	52, 837
BstV1I	GCAGC	2 cut(s)	583, 586
Bsu15I	ATCGAT	1 cut(s)	893
Bsu36I	CCTNAGG	1 cut(s)	492
BsuTUI	ATCGAT	1 cut(s)	893
BtrI	CACGTC	1 cut(s)	793
BtsCI	GGATG	1 cut(s)	831
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 507
Cac8I	GCNNGC	3 cut(s)	54, 354, 594
CaiI	CAGNNNCTG	1 cut(s)	859
CfoI	GCGC	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	689
ClaI	ATCGAT	1 cut(s)	893
CseI	GACGC	2 cut(s)	58, 821
Csp6I	GTAC	1 cut(s)	747
CviAII	CATG	3 cut(s)	122, 722, 773
CviQI	GTAC	1 cut(s)	747
DdeI	CTNAG	4 cut(s)	432, 492, 802, 870
DpnI	GATC	4 cut(s)	273, 744, 864, 892
DpnII	GATC	4 cut(s)	271, 742, 862, 890
DraI	TTTAAA	2 cut(s)	532, 913
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	512
Ecl136II	GAGCTC	2 cut(s)	56, 662
Eco24I	GRGCYC	2 cut(s)	58, 664
Eco31I	GGTCTC	1 cut(s)	636
Eco53kI	GAGCTC	2 cut(s)	56, 662
Eco57I	CTGAAG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	492
EcoICRI	GAGCTC	2 cut(s)	56, 662
EcoRII	CCWGG	1 cut(s)	821
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	2 cut(s)	58, 664
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	3 cut(s)	125, 725, 776
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	3 cut(s)	121, 721, 772
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	3 cut(s)	597, 600, 830
FokI	GGATG	1 cut(s)	838
FriOI	GRGCYC	2 cut(s)	58, 664
Fsp4HI	GCNGC	3 cut(s)	597, 600, 830
FspBI	CTAG	4 cut(s)	83, 279, 353, 920
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	3 cut(s)	597, 600, 830
HapII	CCGG	1 cut(s)	690
HgaI	GACGC	2 cut(s)	58, 821
HhaI	GCGC	1 cut(s)	604
Hin1I	GRCGYC	1 cut(s)	832
Hin1II	CATG	3 cut(s)	125, 725, 776
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HinfI	GANTC	6 cut(s)	142, 536, 550, 842, 850, 924
HpaII	CCGG	1 cut(s)	690
HphI	GGTGA	2 cut(s)	142, 385
Hpy166II	GTNNAC	2 cut(s)	383, 544
Hpy188I	TCNGA	1 cut(s)	805
Hpy188III	TCNNGA	5 cut(s)	65, 329, 431, 754, 860
Hpy8I	GTNNAC	2 cut(s)	383, 544
Hpy99I	CGWCG	1 cut(s)	837
HpyAV	CCTTC	2 cut(s)	627, 722
HpyCH4III	ACNGT	4 cut(s)	387, 424, 511, 751
HpyCH4IV	ACGT	2 cut(s)	476, 792
HpyCH4V	TGCA	4 cut(s)	13, 383, 460, 817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 230, 442, 593
HpyF3I	CTNAG	4 cut(s)	432, 492, 802, 870
HpySE526I	ACGT	2 cut(s)	476, 792
Hsp92I	GRCGYC	1 cut(s)	832
Hsp92II	CATG	3 cut(s)	125, 725, 776
HspAI	GCGC	1 cut(s)	602
Kzo9I	GATC	4 cut(s)	271, 742, 862, 890
LmnI	GCTCC	6 cut(s)	79, 221, 433, 619, 659, 667
Lsp1109I	GCAGC	2 cut(s)	583, 586
LweI	GCATC	1 cut(s)	816
MaeI	CTAG	4 cut(s)	83, 279, 353, 920
MaeII	ACGT	2 cut(s)	476, 792
MaeIII	GTNAC	6 cut(s)	15, 116, 130, 171, 505, 697
MalI	GATC	4 cut(s)	273, 744, 864, 892
MboI	GATC	4 cut(s)	271, 742, 862, 890
MboII	GAAGA	4 cut(s)	23, 26, 151, 347
MhlI	GDGCHC	3 cut(s)	58, 385, 664
MluCI	AATT	6 cut(s)	101, 310, 453, 575, 650, 757
MlyI	GAGTC	2 cut(s)	530, 918
MmeI	TCCRAC	1 cut(s)	659
Mph1103I	ATGCAT	1 cut(s)	462
MseI	TTAA	8 cut(s)	237, 296, 344, 389, 531, 570, 606, 912
MslI	CAYNNNNRTG	2 cut(s)	777, 824
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	1 cut(s)	690
MspR9I	CCNGG	1 cut(s)	823
MvaI	CCWGG	1 cut(s)	823
MvnI	CGCG	2 cut(s)	52, 837
MwoI	GCNNNNNNNGC	4 cut(s)	49, 230, 442, 593
NdeII	GATC	4 cut(s)	271, 742, 862, 890
NheI	GCTAGC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	125, 725, 776
NmeAIII	GCCGAG	1 cut(s)	697
NmuCI	GTSAC	3 cut(s)	15, 130, 505
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	1 cut(s)	725
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PfeI	GAWTC	4 cut(s)	142, 550, 842, 850
PkrI	GCNGC	3 cut(s)	598, 601, 831
Ple19I	CGATCG	1 cut(s)	745
PleI	GAGTC	2 cut(s)	530, 918
PpsI	GAGTC	2 cut(s)	530, 918
Psp124BI	GAGCTC	2 cut(s)	58, 664
Psp6I	CCWGG	1 cut(s)	821
PspGI	CCWGG	1 cut(s)	821
PstNI	CAGNNNCTG	1 cut(s)	859
PvuI	CGATCG	1 cut(s)	745
RsaI	GTAC	1 cut(s)	748
RsaNI	GTAC	1 cut(s)	747
RseI	CAYNNNNRTG	2 cut(s)	777, 824
SacI	GAGCTC	2 cut(s)	58, 664
SaqAI	TTAA	8 cut(s)	237, 296, 344, 389, 531, 570, 606, 912
SatI	GCNGC	3 cut(s)	597, 600, 830
Sau3AI	GATC	4 cut(s)	271, 742, 862, 890
SchI	GAGTC	2 cut(s)	530, 918
ScrFI	CCNGG	1 cut(s)	823
SduI	GDGCHC	3 cut(s)	58, 385, 664
SfaNI	GCATC	1 cut(s)	816
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	777, 824
SmlI	CTYRAG	2 cut(s)	302, 569
SmoI	CTYRAG	2 cut(s)	302, 569
Sse9I	AATT	6 cut(s)	101, 310, 453, 575, 650, 757
SsiI	CCGC	5 cut(s)	497, 639, 644, 681, 829
SspMI	CTAG	4 cut(s)	83, 279, 353, 920
SstI	GAGCTC	2 cut(s)	58, 664
StyD4I	CCNGG	1 cut(s)	821
TaaI	ACNGT	4 cut(s)	387, 424, 511, 751
TaiI	ACGT	2 cut(s)	479, 795
TaqI	TCGA	4 cut(s)	741, 764, 893, 950
TasI	AATT	6 cut(s)	101, 310, 453, 575, 650, 757
TauI	GCSGC	1 cut(s)	832
TfiI	GAWTC	4 cut(s)	142, 550, 842, 850
Tru1I	TTAA	8 cut(s)	237, 296, 344, 389, 531, 570, 606, 912
Tru9I	TTAA	8 cut(s)	237, 296, 344, 389, 531, 570, 606, 912
TscAI	CASTG	2 cut(s)	81, 514
TseFI	GTSAC	3 cut(s)	15, 130, 505
TseI	GCWGC	2 cut(s)	596, 599
Tsp45I	GTSAC	3 cut(s)	15, 130, 505
TspDTI	ATGAA	4 cut(s)	152, 348, 761, 911
TspGWI	ACGGA	1 cut(s)	529
TspRI	CASTG	2 cut(s)	81, 514
Vha464I	CTTAAG	1 cut(s)	569
VneI	GTGCAC	1 cut(s)	381
XapI	RAATTY	3 cut(s)	101, 575, 757
XceI	RCATGY	1 cut(s)	725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	4 cut(s)	83, 279, 353, 920
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.