Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014558

Physical Location & Seq

Genomic Coordinates Forward (+)

2258030 .. 2261682

Gene Structure 3653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22106

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCTGGCTTATATTCTTGACCCACCTAGAGATGGGTTTAATCTTACATTGAAGCTCAATCTCTCTAAACTTCCTCCAGATGAAGGTTCAACGAGTTCCTTTTCTAAGTACAAACATGCTCTTTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCTGCTTGCTTCGAGGACTGTTGCTTCCAATATTGATCCACTTGTTGCTCTTGTGCATCGGCCAAAGGAATCCTTTTTTCCTTATTCCTCAGAAAAGGTGACCGTGGTATTTCCTATGAGATTCAAGGACTCTATTGACATTGTTCTTGCAACTTCCTTCCTGCAGGAATTTGTGGATGCAAAATGTACGGCTGGACTTAATAATGCTCCTTATTGTATGTGGTCTCCGACCCCTCCTTTAGAACTAAAGGGAGCTCCTGATGAAGCTCTATCTGTCAATGCGGGATTTGTCGCTTTTGTTGTTTTACCTCGTCATGTGGAAGGCAAGAAACTGGATCGGACAGTTTGGAGTTTATCAACTTTCCATGCATATGTTAGTTATCATGTTGAGGAGAAACTAAAATCTGTTGAATGCCTCCAACCTGCTTCCCGATGCTGCAAAGAGTATGTTAGTTTTTCAATTACCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

218

Amino Acids

24.24

Weight (kDa)

8.75

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	7 - 191	1.2e-28	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30825
fragaria_vesca	FvH4_3g13510 FvH4_3g13510
malus_domestica	MD10G1221300.v1.1
prunus_persica	Prupe.4G123300_v2.0.a1 Prupe.4G123300_v2.0.a1
pyrus_communis	pycom10g18690
rosa_chinensis	RchiOBHm_Chr5g0022461 RchiOBHm_Chr6g0246611 RchiOBHm_Chr6g0255501
rosa_laevigata	RLG00000032661
rosa_multiflora	Rmu_sc0005639.1_g000004
rosa_roxburghii	Rroxscaffold_1G00056590
rosa_rugosa	Rorug05G0073700 Rorug05G0073800
rosa_samantha	Rh5AG160700
rosa_wichuraiana	Rw5G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	616
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	2 cut(s)	215, 528
AcoI	YGGCCR	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	2 cut(s)	110, 373
AfiI	CCNNNNNNNGG	2 cut(s)	32, 83
AgsI	TTSAA	5 cut(s)	52, 90, 310, 596, 645
AluBI	AGCT	5 cut(s)	55, 164, 187, 440, 452
AluI	AGCT	5 cut(s)	55, 164, 187, 440, 452
Alw21I	GWGCWC	2 cut(s)	166, 442
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	2 cut(s)	215, 528
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	187, 621
ApoI	RAATTY	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	166, 442
Bbv12I	GWGCWC	2 cut(s)	166, 442
BbvI	GCAGC	2 cut(s)	174, 608
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	2 cut(s)	27, 158
BfmI	CTRYAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	616
BisI	GCNGC	2 cut(s)	188, 622
BlsI	GCNGC	2 cut(s)	189, 623
BmsI	GCATC	4 cut(s)	146, 250, 352, 608
BpmI	CTGGAG	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 83
Bse1I	ACTGG	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	32, 83
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	174, 608
BshFI	GGCC	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	166, 442
BslI	CCNNNNNNNGG	2 cut(s)	32, 83
BsmAI	GTCTC	1 cut(s)	414
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	1 cut(s)	247
Bso31I	GGTCTC	1 cut(s)	414
Bsp1286I	GDGCHC	2 cut(s)	166, 442
Bsp143I	GATC	2 cut(s)	220, 520
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	287
BspMAI	CTGCAG	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	2 cut(s)	215, 528
BspTNI	GGTCTC	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	220, 520
Bst4CI	ACNGT	3 cut(s)	205, 289, 529
BstC8I	GCNNGC	2 cut(s)	6, 192
BstDEI	CTNAG	2 cut(s)	105, 274
BstDSI	CCRYGG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	2 cut(s)	223, 523
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	2 cut(s)	220, 520
BstNSI	RCATGY	1 cut(s)	119
BstPI	GGTNACC	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	347
BstV1I	GCAGC	2 cut(s)	174, 608
BsuRI	GGCC	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	2 cut(s)	6, 192
Csp6I	GTAC	2 cut(s)	109, 372
CviAII	CATG	4 cut(s)	116, 500, 551, 569
CviJI	RGCY	8 cut(s)	8, 55, 164, 187, 247, 377, 440, 452
CviKI_1	RGCY	8 cut(s)	8, 55, 164, 187, 247, 377, 440, 452
CviQI	GTAC	2 cut(s)	109, 372
DdeI	CTNAG	2 cut(s)	105, 274
DpnI	GATC	2 cut(s)	222, 522
DpnII	GATC	2 cut(s)	220, 520
EaeI	YGGCCR	1 cut(s)	245
Ecl136II	GAGCTC	2 cut(s)	164, 440
Eco24I	GRGCYC	2 cut(s)	166, 442
Eco31I	GGTCTC	1 cut(s)	414
Eco53kI	GAGCTC	2 cut(s)	164, 440
Eco57I	CTGAAG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	283
EcoICRI	GAGCTC	2 cut(s)	164, 440
EcoO65I	GGTNACC	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	556
EcoT38I	GRGCYC	2 cut(s)	166, 442
FaeI	CATG	4 cut(s)	119, 503, 554, 572
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	4 cut(s)	115, 499, 550, 568
FauI	CCCGC	1 cut(s)	460
FauNDI	CATATG	1 cut(s)	556
Fnu4HI	GCNGC	2 cut(s)	188, 622
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	2 cut(s)	166, 442
Fsp4HI	GCNGC	2 cut(s)	188, 622
FspBI	CTAG	2 cut(s)	27, 158
GluI	GCNGC	2 cut(s)	188, 622
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	119, 503, 554, 572
HinfI	GANTC	3 cut(s)	254, 306, 314
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	4 cut(s)	183, 277, 414, 525
Hpy188III	TCNNGA	4 cut(s)	17, 77, 443, 615
HpyAV	CCTTC	3 cut(s)	77, 352, 500
HpyCH4III	ACNGT	3 cut(s)	205, 289, 529
HpyCH4V	TGCA	7 cut(s)	137, 241, 335, 349, 365, 554, 624
HpyF3I	CTNAG	2 cut(s)	105, 274
Hsp92II	CATG	4 cut(s)	119, 503, 554, 572
Kzo9I	GATC	2 cut(s)	220, 520
LmnI	GCTCC	5 cut(s)	161, 169, 397, 437, 445
LpnPI	CCDG	7 cut(s)	90, 335, 359, 363, 456, 503, 621
Lsp1109I	GCAGC	2 cut(s)	174, 608
LweI	GCATC	4 cut(s)	146, 250, 352, 608
MaeI	CTAG	2 cut(s)	27, 158
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	222, 522
MboI	GATC	2 cut(s)	220, 520
MhlI	GDGCHC	2 cut(s)	166, 442
MluCI	AATT	3 cut(s)	177, 353, 645
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	2 cut(s)	437, 628
MnlI	CCTC	7 cut(s)	84, 192, 283, 429, 504, 568, 611
Mph1103I	ATGCAT	1 cut(s)	556
MseI	TTAA	2 cut(s)	39, 384
MslI	CAYNNNNRTG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	602
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	2 cut(s)	220, 520
NlaIII	CATG	4 cut(s)	119, 503, 554, 572
NmuCI	GTSAC	1 cut(s)	283
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	1 cut(s)	119
PctI	GAATGC	1 cut(s)	602
PfeI	GAWTC	2 cut(s)	254, 306
PkrI	GCNGC	2 cut(s)	189, 623
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Psp124BI	GAGCTC	2 cut(s)	166, 442
PspEI	GGTNACC	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	351
RsaI	GTAC	2 cut(s)	110, 373
RsaNI	GTAC	2 cut(s)	109, 372
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	2 cut(s)	166, 442
SaqAI	TTAA	2 cut(s)	39, 384
SatI	GCNGC	2 cut(s)	188, 622
Sau3AI	GATC	2 cut(s)	220, 520
SbfI	CCTGCAGG	1 cut(s)	351
SchI	GAGTC	1 cut(s)	308
SdaI	CCTGCAGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	166, 442
SfaNI	GCATC	4 cut(s)	146, 250, 352, 608
SfcI	CTRYAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	555
Sse8387I	CCTGCAGG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	177, 353, 645
SsiI	CCGC	1 cut(s)	467
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	27, 158
SstI	GAGCTC	2 cut(s)	166, 442
TaaI	ACNGT	3 cut(s)	205, 289, 529
TaqI	TCGA	1 cut(s)	197
TasI	AATT	3 cut(s)	177, 353, 645
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	254, 306
Tru1I	TTAA	2 cut(s)	39, 384
Tru9I	TTAA	2 cut(s)	39, 384
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	187, 621
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	96, 462
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	2 cut(s)	27, 158
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.