Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014558

Physical Location & Seq

Genomic Coordinates Reverse (-)

17442687 .. 17446091

Gene Structure 3405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032661

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGATACTTCTACAATCCCATTCAAGATTCCTCCTTGACACCTTGTTAAATCGCCTCCAAAACATTGAAAAAGCGGTGGAGCTGGACTACCATTGGGCCGAGTTCGATGACGTCCGGTACCACATTCAGGTGACGATGAAAAACCCACACATTGTGCTGCTTTCGGTTTCGCTGCCGACCCCACCTCCGGAAACTGTGTTCTTGAGTGGGCTTCCTGCTGGGGCTATAGAGGCTATAAAGGCTGCGTATGGATCAGTAGTGCAGATTCTTGACCCACCTAGAGATGGGTTTAATCTTACATTGAAGCTCAATCTCTCTAAACTTCCTACAGATGAAGAGTACAAACATGCTCTTTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCTTGCTTCGAGGACTGTTGCTTCAGATATTGATCCACTTGTTGCTCTTGTGCATCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGGCAGAAAAGGTGACCGTGGTATTTCCTATGAGATTCAAGGACTCTATTGACATTGTTCTTGCAACTTCCTTCCTGCAGGAATTTGTGGATGCAAGACGTACGGCTGGACTTAATAATGCTCCTTACTGTATGTGGTCTCCGACCCCTCCTTTAGAACTAAAGGGAGCTCCTGATGAAGCTCTATCTGTCAATGCGGGATTTGTCACTTTTGTTGTTTTACCTCGTCATGTTGAAGGCAAGAAACTGGATCGGACAGTTTGGAGTTTATCAACTTTCCATGCATATGTTAGTTATCATGTTAAGTGTTCAGAGGGATTCATGCATACAAGGATGCGACGGCGTGTAGAATCTTTGATTGAGGCTCTTGATCGTGCTAAGCTTGGAATGGAGAATGCAAGGAATAATGCAGCTCAGAATAGATCCTTTAAACGGCTGAGCCTCAAGGAAGCTAGGAACCATTCTTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

326

Amino Acids

36.64

Weight (kDa)

9.24

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	74 - 296	1.4e-54	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30825
fragaria_vesca	FvH4_3g13510 FvH4_3g13510
malus_domestica	MD10G1221300.v1.1
prunus_persica	Prupe.4G123300_v2.0.a1 Prupe.4G123300_v2.0.a1
pyrus_communis	pycom10g18690
rosa_chinensis	RchiOBHm_Chr5g0022461 RchiOBHm_Chr6g0246611 RchiOBHm_Chr6g0255501
rosa_laevigata	RLG00000032661
rosa_multiflora	Rmu_sc0005639.1_g000004
rosa_roxburghii	Rroxscaffold_1G00056590
rosa_rugosa	Rorug05G0073700 Rorug05G0073800
rosa_samantha	Rh5AG160700
rosa_wichuraiana	Rw5G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
Acc65I	GGTACC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	2 cut(s)	74, 701
AclWI	GGATC	4 cut(s)	259, 446, 762, 921
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	2 cut(s)	426, 434
AcyI	GRCGYC	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	3 cut(s)	119, 341, 607
AfiI	CCNNNNNNNGG	4 cut(s)	127, 187, 284, 936
AgsI	TTSAA	5 cut(s)	24, 68, 304, 544, 740
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	9 cut(s)	82, 307, 395, 421, 674, 686, 886, 917, 956
AluI	AGCT	9 cut(s)	82, 307, 395, 421, 674, 686, 886, 917, 956
Alw21I	GWGCWC	2 cut(s)	397, 676
Alw26I	GTCTC	1 cut(s)	648
AlwI	GGATC	4 cut(s)	259, 446, 762, 921
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	2 cut(s)	96, 476
ApeKI	GCWGC	5 cut(s)	157, 172, 242, 418, 914
ApoI	RAATTY	1 cut(s)	587
Asp718I	GGTACC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	142, 529
AxyI	CCTNAGG	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	117
BanII	GRGCYC	2 cut(s)	397, 676
Bbv12I	GWGCWC	2 cut(s)	397, 676
BbvI	GCAGC	5 cut(s)	144, 159, 229, 430, 926
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	3 cut(s)	624, 860, 953
BcoDI	GTCTC	1 cut(s)	648
BfaI	CTAG	3 cut(s)	279, 389, 957
BfmI	CTRYAG	3 cut(s)	225, 327, 581
BisI	GCNGC	5 cut(s)	158, 173, 243, 419, 915
BlpI	GCTNAGC	2 cut(s)	882, 941
BlsI	GCNGC	5 cut(s)	159, 174, 244, 420, 916
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	119, 962
BmsI	GCATC	4 cut(s)	377, 481, 586, 828
Bpu1102I	GCTNAGC	2 cut(s)	882, 941
BpuEI	CTTGAG	2 cut(s)	223, 932
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	522
BsaWI	WCCGGW	2 cut(s)	114, 187
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 187, 284, 936
Bse1I	ACTGG	1 cut(s)	756
Bse21I	CCTNAGG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	2 cut(s)	601, 843
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	4 cut(s)	127, 187, 284, 936
BseMII	CTCAG	3 cut(s)	518, 932, 932
BseNI	ACTGG	1 cut(s)	756
BseXI	GCAGC	5 cut(s)	144, 159, 229, 430, 926
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	98, 478
BshNI	GGYRCC	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	397, 676
BsiSI	CCGG	2 cut(s)	115, 188
BsiWI	CGTACG	1 cut(s)	605
BslI	CCNNNNNNNGG	4 cut(s)	127, 187, 284, 936
BsmAI	GTCTC	1 cut(s)	648
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	2 cut(s)	98, 478
Bso31I	GGTCTC	1 cut(s)	648
Bsp1286I	GDGCHC	2 cut(s)	397, 676
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	251, 451, 754, 874, 926
Bsp1720I	GCTNAGC	2 cut(s)	882, 941
BspACI	CCGC	2 cut(s)	74, 701
BspANI	GGCC	2 cut(s)	98, 478
BspCNI	CTCAG	3 cut(s)	517, 931, 933
BspEI	TCCGGA	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	119, 962
BspMAI	CTGCAG	1 cut(s)	585
BspPI	GGATC	4 cut(s)	259, 446, 762, 921
BspT107I	GGYRCC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	756
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	5 cut(s)	251, 451, 754, 874, 926
BssNI	GRCGYC	1 cut(s)	111
Bst4CI	ACNGT	5 cut(s)	196, 436, 523, 635, 763
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	4 cut(s)	504, 882, 918, 941
BstDSI	CCRYGG	1 cut(s)	522
BstEII	GGTNACC	1 cut(s)	517
BstF5I	GGATG	2 cut(s)	601, 843
BstKTI	GATC	5 cut(s)	254, 454, 757, 877, 929
BstMAI	GTCTC	1 cut(s)	648
BstMBI	GATC	5 cut(s)	251, 451, 754, 874, 926
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 239
BstNSI	RCATGY	1 cut(s)	350
BstPI	GGTNACC	1 cut(s)	517
BstSFI	CTRYAG	3 cut(s)	225, 327, 581
BstV1I	GCAGC	5 cut(s)	144, 159, 229, 430, 926
BstX2I	RGATCY	1 cut(s)	926
BstYI	RGATCY	1 cut(s)	926
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	98, 478
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	601, 843
Cac8I	GCNNGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	96
Csp6I	GTAC	3 cut(s)	118, 340, 606
CviAII	CATG	5 cut(s)	347, 734, 785, 803, 826
CviQI	GTAC	3 cut(s)	118, 340, 606
DdeI	CTNAG	4 cut(s)	504, 882, 918, 941
DpnI	GATC	5 cut(s)	253, 453, 756, 876, 928
DpnII	GATC	5 cut(s)	251, 451, 754, 874, 926
DraI	TTTAAA	1 cut(s)	934
DraIII	CACNNNGTG	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	476
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Ecl136II	GAGCTC	2 cut(s)	395, 674
Eco24I	GRGCYC	2 cut(s)	397, 676
Eco31I	GGTCTC	1 cut(s)	648
Eco53kI	GAGCTC	2 cut(s)	395, 674
Eco57I	CTGAAG	2 cut(s)	426, 434
Eco81I	CCTNAGG	1 cut(s)	504
Eco91I	GGTNACC	1 cut(s)	517
EcoICRI	GAGCTC	2 cut(s)	395, 674
EcoO65I	GGTNACC	1 cut(s)	517
EcoT22I	ATGCAT	2 cut(s)	790, 831
EcoT38I	GRGCYC	2 cut(s)	397, 676
FaeI	CATG	5 cut(s)	350, 737, 788, 806, 829
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FatI	CATG	5 cut(s)	346, 733, 784, 802, 825
FauI	CCCGC	1 cut(s)	694
FauNDI	CATATG	1 cut(s)	790
Fnu4HI	GCNGC	5 cut(s)	158, 173, 243, 419, 915
FokI	GGATG	2 cut(s)	608, 850
FriOI	GRGCYC	2 cut(s)	397, 676
Fsp4HI	GCNGC	5 cut(s)	158, 173, 243, 419, 915
FspBI	CTAG	3 cut(s)	279, 389, 957
GluI	GCNGC	5 cut(s)	158, 173, 243, 419, 915
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	98, 478
HapII	CCGG	2 cut(s)	115, 188
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	5 cut(s)	350, 737, 788, 806, 829
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	7 cut(s)	27, 265, 485, 540, 548, 822, 854
HpaII	CCGG	2 cut(s)	115, 188
HphI	GGTGA	2 cut(s)	142, 529
Hpy188I	TCNGA	6 cut(s)	414, 445, 648, 759, 817, 921
Hpy188III	TCNNGA	6 cut(s)	24, 188, 202, 269, 677, 872
Hpy99I	CGWCG	1 cut(s)	846
HpyAV	CCTTC	2 cut(s)	586, 734
HpyCH4III	ACNGT	5 cut(s)	196, 436, 523, 635, 763
HpyCH4IV	ACGT	2 cut(s)	111, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 239
HpyF3I	CTNAG	4 cut(s)	504, 882, 918, 941
HpySE526I	ACGT	2 cut(s)	111, 604
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	5 cut(s)	350, 737, 788, 806, 829
Kpn2I	TCCGGA	1 cut(s)	187
KpnI	GGTACC	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	251, 451, 754, 874, 926
LmnI	GCTCC	6 cut(s)	79, 392, 400, 631, 671, 679
Lsp1109I	GCAGC	5 cut(s)	144, 159, 229, 430, 926
LweI	GCATC	4 cut(s)	377, 481, 586, 828
MaeI	CTAG	3 cut(s)	279, 389, 957
MaeII	ACGT	2 cut(s)	111, 604
MaeIII	GTNAC	3 cut(s)	130, 517, 709
MalI	GATC	5 cut(s)	253, 453, 756, 876, 928
MboI	GATC	5 cut(s)	251, 451, 754, 874, 926
MboII	GAAGA	1 cut(s)	347
MflI	RGATCY	1 cut(s)	926
MhlI	GDGCHC	2 cut(s)	397, 676
MluCI	AATT	3 cut(s)	408, 587, 973
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	1 cut(s)	671
Mph1103I	ATGCAT	2 cut(s)	790, 831
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	7 cut(s)	47, 291, 618, 807, 933, 972, 976
MslI	CAYNNNNRTG	2 cut(s)	128, 789
MspI	CCGG	2 cut(s)	115, 188
Mva1269I	GAATGC	1 cut(s)	904
MwoI	GCNNNNNNNGC	2 cut(s)	230, 239
NdeI	CATATG	1 cut(s)	790
NdeII	GATC	5 cut(s)	251, 451, 754, 874, 926
NlaIII	CATG	5 cut(s)	350, 737, 788, 806, 829
NlaIV	GGNNCC	2 cut(s)	119, 962
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	130, 517, 709
NsiI	ATGCAT	2 cut(s)	790, 831
NspI	RCATGY	1 cut(s)	350
PacI	TTAATTAA	1 cut(s)	976
PctI	GAATGC	1 cut(s)	904
PfeI	GAWTC	6 cut(s)	27, 265, 485, 540, 822, 854
Pfl23II	CGTACG	1 cut(s)	605
PkrI	GCNGC	5 cut(s)	159, 174, 244, 420, 916
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
Psp124BI	GAGCTC	2 cut(s)	397, 676
PspEI	GGTNACC	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	218
PspLI	CGTACG	1 cut(s)	605
PspN4I	GGNNCC	2 cut(s)	119, 962
PspPI	GGNCC	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	585
PsuI	RGATCY	1 cut(s)	926
RsaI	GTAC	3 cut(s)	119, 341, 607
RsaNI	GTAC	3 cut(s)	118, 340, 606
RseI	CAYNNNNRTG	2 cut(s)	128, 789
SacI	GAGCTC	2 cut(s)	397, 676
SaqAI	TTAA	7 cut(s)	47, 291, 618, 807, 933, 972, 976
SatI	GCNGC	5 cut(s)	158, 173, 243, 419, 915
Sau3AI	GATC	5 cut(s)	251, 451, 754, 874, 926
Sau96I	GGNCC	1 cut(s)	96
SbfI	CCTGCAGG	1 cut(s)	585
SchI	GAGTC	1 cut(s)	542
SdaI	CCTGCAGG	1 cut(s)	585
SduI	GDGCHC	2 cut(s)	397, 676
SfaNI	GCATC	4 cut(s)	377, 481, 586, 828
SfcI	CTRYAG	3 cut(s)	225, 327, 581
SmiMI	CAYNNNNRTG	2 cut(s)	128, 789
SmlI	CTYRAG	2 cut(s)	202, 947
SmoI	CTYRAG	2 cut(s)	202, 947
Sse8387I	CCTGCAGG	1 cut(s)	585
Sse9I	AATT	3 cut(s)	408, 587, 973
SsiI	CCGC	2 cut(s)	74, 701
SspMI	CTAG	3 cut(s)	279, 389, 957
SstI	GAGCTC	2 cut(s)	397, 676
TaaI	ACNGT	5 cut(s)	196, 436, 523, 635, 763
TaiI	ACGT	2 cut(s)	114, 607
TaqI	TCGA	2 cut(s)	105, 428
TasI	AATT	3 cut(s)	408, 587, 973
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	6 cut(s)	27, 265, 485, 540, 822, 854
Tru1I	TTAA	7 cut(s)	47, 291, 618, 807, 933, 972, 976
Tru9I	TTAA	7 cut(s)	47, 291, 618, 807, 933, 972, 976
TseFI	GTSAC	3 cut(s)	130, 517, 709
TseI	GCWGC	5 cut(s)	157, 172, 242, 418, 914
Tsp45I	GTSAC	3 cut(s)	130, 517, 709
TspDTI	ATGAA	4 cut(s)	152, 348, 696, 814
XapI	RAATTY	1 cut(s)	587
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	3 cut(s)	279, 389, 957
ZraI	GACGTC	1 cut(s)	112
Zsp2I	ATGCAT	2 cut(s)	790, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.