Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014558

Physical Location & Seq

Genomic Coordinates Reverse (-)

6702589 .. 6706816

Gene Structure 4228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G123300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGATTCTCTTGCAGTCCCATTCAAGATTTCTCCTTGACACCTTGCTCAATCGCCTCCAAAACATCGAAAAAGCAGTGGAGGCGGACTACCACTGGGCCGAGTTCGATGACGTTCGGTACCATATTCAGGTGACGATGAAGAACCCACATATCTTGTTACTTTCTGTATCGTTGCCCACTCCACCTCAAGAAACCGTGTTCTTGGGTGGGCTTCCGTCTGGAGCTATAGAGGCTATAAAGGCTGCATATGGTGCGGTTGTTCAAATTCTTGACCCCCCAAGAGATGGGTTTAATCTCACATTGAAGCTCAATCTCTCTAAACTCCCTCCAGATGAAGAGTACAAACATGCTCTTTTGGTAAAGATTGCATCTGTAAGAGAAGTGGTGCTAGGCGCTCCATTGAGAGGAATTCTGAAGAAGCTTACTTCAAGGACTGTTGCTTCCAATACTGATGGGCTTGTTGCTCTTGTGCATCGGCCAAACGAGTCCTTTTTCCTTATTCCTCAGGCAGAGAAAGTGACGGTAATATTCCCTATGAGATTCAAGGACTCTATTGATATTGTTCTTGCAACTTCCTTCCTGCAGGAATTTGTGGAAGCAAGACGCATGGCTGGACTTAATACTGCCCCTCCTTGTTTGTGGTCTCCTACCCCTCCGTTAGAACTAAAGGAAGCTCCTGCTGAAGCACTATCTGCCAATGCAGGATTTGTCACTTTTGTTATTTTCCCTCGTCACGTGGAAGGCAAGAAACTGGATCGAACAGTTTGCAGTTTATCAACTTTTCATGCTTATGTTAGTTATCATGTTAAGTGTTCTGAGGGTTTCATGCATACAAGGATGCGGCGTCGGGTGGAATCTTTGATTGAGGCTCTTGATCGTGCTAAGCCTGGTATGGAGAATGCAAAGAATGCTTCTCAAAGTAGATCATTCAAACGGCTGAGCCTAAAGGAAGCCAGGGCTAATTCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

324

Amino Acids

36.08

Weight (kDa)

9.28

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30825
fragaria_vesca	FvH4_3g13510 FvH4_3g13510
malus_domestica	MD10G1221300.v1.1
prunus_persica	Prupe.4G123300_v2.0.a1 Prupe.4G123300_v2.0.a1
pyrus_communis	pycom10g18690
rosa_chinensis	RchiOBHm_Chr5g0022461 RchiOBHm_Chr6g0246611 RchiOBHm_Chr6g0255501
rosa_laevigata	RLG00000032661
rosa_multiflora	Rmu_sc0005639.1_g000004
rosa_roxburghii	Rroxscaffold_1G00056590
rosa_rugosa	Rorug05G0073700 Rorug05G0073800
rosa_samantha	Rh5AG160700
rosa_wichuraiana	Rw5G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	117
AccB7I	CCANNNNNTGG	1 cut(s)	284
AciI	CCGC	3 cut(s)	83, 254, 841
AclWI	GGATC	1 cut(s)	762
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	3 cut(s)	264, 408, 587
AcuI	CTGAAG	2 cut(s)	434, 702
AcvI	CACGTG	1 cut(s)	736
AcyI	GRCGYC	1 cut(s)	844
AfaI	GTAC	2 cut(s)	119, 341
AfiI	CCNNNNNNNGG	3 cut(s)	127, 284, 404
AgsI	TTSAA	7 cut(s)	24, 263, 304, 429, 544, 931, 966
AjnI	CCWGG	2 cut(s)	886, 953
AluBI	AGCT	4 cut(s)	224, 307, 421, 674
AluI	AGCT	4 cut(s)	224, 307, 421, 674
Alw26I	GTCTC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	762
AoxI	GGCC	2 cut(s)	96, 476
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	3 cut(s)	264, 408, 587
Asp718I	GGTACC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	142
AxyI	CCTNAGG	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	117
BbrPI	CACGTG	1 cut(s)	736
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	278, 446
BceAI	ACGGC	1 cut(s)	950
BcgI	CGANNNNNNTGC	2 cut(s)	747, 781
BciT130I	CCWGG	2 cut(s)	888, 955
BcoDI	GTCTC	1 cut(s)	648
BfaI	CTAG	2 cut(s)	389, 970
BfmI	CTRYAG	2 cut(s)	225, 581
BfoI	RGCGCY	1 cut(s)	396
BisI	GCNGC	2 cut(s)	243, 842
BlpI	GCTNAGC	2 cut(s)	882, 938
BlsI	GCNGC	2 cut(s)	244, 843
Bme1390I	CCNGG	2 cut(s)	888, 955
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	2 cut(s)	888, 955
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	3 cut(s)	377, 481, 828
BmuI	ACTGGG	1 cut(s)	103
BpmI	CTGGAG	2 cut(s)	240, 312
Bpu1102I	GCTNAGC	2 cut(s)	882, 938
BpuEI	CTTGAG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	736
BsaHI	GRCGYC	1 cut(s)	844
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	954
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 284, 404
Bse1I	ACTGG	2 cut(s)	98, 756
Bse21I	CCTNAGG	1 cut(s)	504
BseBI	CCWGG	2 cut(s)	888, 955
BseDI	CCNNGG	1 cut(s)	954
BseGI	GGATG	1 cut(s)	843
BseLI	CCNNNNNNNGG	3 cut(s)	127, 284, 404
BseMII	CTCAG	3 cut(s)	518, 807, 929
BseNI	ACTGG	2 cut(s)	98, 756
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	2 cut(s)	98, 478
BshNI	GGYRCC	1 cut(s)	117
BslI	CCNNNNNNNGG	3 cut(s)	127, 284, 404
BsmAI	GTCTC	1 cut(s)	648
BsmI	GAATGC	2 cut(s)	904, 913
BsnI	GGCC	2 cut(s)	98, 478
Bso31I	GGTCTC	1 cut(s)	648
Bsp143I	GATC	3 cut(s)	754, 874, 923
Bsp1720I	GCTNAGC	2 cut(s)	882, 938
BspACI	CCGC	3 cut(s)	83, 254, 841
BspANI	GGCC	2 cut(s)	98, 478
BspCNI	CTCAG	3 cut(s)	517, 808, 930
BspLI	GGNNCC	1 cut(s)	119
BspMAI	CTGCAG	1 cut(s)	585
BspPI	GGATC	1 cut(s)	762
BspT107I	GGYRCC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	98, 756
BssECI	CCNNGG	1 cut(s)	954
BssMI	GATC	3 cut(s)	754, 874, 923
BssNI	GRCGYC	1 cut(s)	844
Bst2UI	CCWGG	2 cut(s)	888, 955
Bst4CI	ACNGT	4 cut(s)	196, 436, 523, 763
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	844
BstAPI	GCANNNNNTGC	3 cut(s)	251, 692, 908
BstBAI	YACGTR	1 cut(s)	736
BstDEI	CTNAG	4 cut(s)	504, 816, 882, 938
BstF5I	GGATG	1 cut(s)	843
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	3 cut(s)	757, 877, 926
BstMAI	GTCTC	1 cut(s)	648
BstMBI	GATC	3 cut(s)	754, 874, 923
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 230, 239, 251, 692, 908
BstNI	CCWGG	2 cut(s)	888, 955
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	886, 953
BstSFI	CTRYAG	2 cut(s)	225, 581
BstV1I	GCAGC	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	98, 478
BtsCI	GGATG	1 cut(s)	843
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 91
CfoI	GCGC	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	96
CseI	GACGC	2 cut(s)	612, 833
Csp6I	GTAC	2 cut(s)	118, 340
CspCI	CAANNNNNGTGG	2 cut(s)	135, 170
CviAII	CATG	5 cut(s)	347, 607, 785, 803, 826
CviQI	GTAC	2 cut(s)	118, 340
DdeI	CTNAG	4 cut(s)	504, 816, 882, 938
DpnI	GATC	3 cut(s)	756, 876, 925
DpnII	GATC	3 cut(s)	754, 874, 923
EaeI	YGGCCR	1 cut(s)	476
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	648
Eco57I	CTGAAG	2 cut(s)	434, 702
Eco72I	CACGTG	1 cut(s)	736
Eco81I	CCTNAGG	1 cut(s)	504
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	886, 953
EcoT22I	ATGCAT	1 cut(s)	831
FaeI	CATG	5 cut(s)	350, 610, 788, 806, 829
FatI	CATG	5 cut(s)	346, 606, 784, 802, 825
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	243, 842
FokI	GGATG	1 cut(s)	850
Fsp4HI	GCNGC	2 cut(s)	243, 842
FspBI	CTAG	2 cut(s)	389, 970
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	2 cut(s)	243, 842
GsuI	CTGGAG	2 cut(s)	240, 312
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	98, 478
HgaI	GACGC	2 cut(s)	612, 833
HhaI	GCGC	1 cut(s)	395
Hin1I	GRCGYC	1 cut(s)	844
Hin1II	CATG	5 cut(s)	350, 610, 788, 806, 829
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	5 cut(s)	4, 485, 540, 548, 854
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	414, 817
Hpy188III	TCNNGA	6 cut(s)	24, 188, 219, 269, 329, 872
Hpy99I	CGWCG	1 cut(s)	849
HpyAV	CCTTC	2 cut(s)	586, 734
HpyCH4III	ACNGT	4 cut(s)	196, 436, 523, 763
HpyCH4IV	ACGT	2 cut(s)	111, 735
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 230, 239, 251, 692, 908
HpyF3I	CTNAG	4 cut(s)	504, 816, 882, 938
HpySE526I	ACGT	2 cut(s)	111, 735
Hsp92I	GRCGYC	1 cut(s)	844
Hsp92II	CATG	5 cut(s)	350, 610, 788, 806, 829
HspAI	GCGC	1 cut(s)	393
KpnI	GGTACC	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	754, 874, 923
LmnI	GCTCC	3 cut(s)	221, 400, 679
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	3 cut(s)	377, 481, 828
MaeI	CTAG	2 cut(s)	389, 970
MaeII	ACGT	2 cut(s)	111, 735
MaeIII	GTNAC	5 cut(s)	130, 156, 517, 709, 731
MalI	GATC	3 cut(s)	756, 876, 925
MboI	GATC	3 cut(s)	754, 874, 923
MboII	GAAGA	3 cut(s)	151, 347, 427
MluCI	AATT	4 cut(s)	264, 408, 587, 961
MlyI	GAGTC	2 cut(s)	494, 542
Mph1103I	ATGCAT	1 cut(s)	831
MseI	TTAA	3 cut(s)	291, 618, 807
MslI	CAYNNNNRTG	1 cut(s)	789
MspR9I	CCNGG	2 cut(s)	888, 955
Mva1269I	GAATGC	2 cut(s)	904, 913
MvaI	CCWGG	2 cut(s)	888, 955
MwoI	GCNNNNNNNGC	6 cut(s)	80, 230, 239, 251, 692, 908
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	3 cut(s)	754, 874, 923
NlaIII	CATG	5 cut(s)	350, 610, 788, 806, 829
NlaIV	GGNNCC	1 cut(s)	119
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	4 cut(s)	130, 517, 709, 731
NsiI	ATGCAT	1 cut(s)	831
NspI	RCATGY	1 cut(s)	350
PctI	GAATGC	2 cut(s)	904, 913
PfeI	GAWTC	3 cut(s)	4, 540, 854
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	244, 843
PleI	GAGTC	2 cut(s)	493, 542
PmaCI	CACGTG	1 cut(s)	736
PmlI	CACGTG	1 cut(s)	736
PpsI	GAGTC	2 cut(s)	493, 542
Ppu21I	YACGTR	1 cut(s)	736
Psp6I	CCWGG	2 cut(s)	886, 953
PspCI	CACGTG	1 cut(s)	736
PspGI	CCWGG	2 cut(s)	886, 953
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	585
RsaI	GTAC	2 cut(s)	119, 341
RsaNI	GTAC	2 cut(s)	118, 340
RseI	CAYNNNNRTG	1 cut(s)	789
SaqAI	TTAA	3 cut(s)	291, 618, 807
SatI	GCNGC	2 cut(s)	243, 842
Sau3AI	GATC	3 cut(s)	754, 874, 923
Sau96I	GGNCC	1 cut(s)	96
SbfI	CCTGCAGG	1 cut(s)	585
SchI	GAGTC	2 cut(s)	494, 542
ScrFI	CCNGG	2 cut(s)	888, 955
SdaI	CCTGCAGG	1 cut(s)	585
SetI	ASST	9 cut(s)	44, 114, 132, 187, 226, 309, 423, 676, 738
SfaNI	GCATC	3 cut(s)	377, 481, 828
SfcI	CTRYAG	2 cut(s)	225, 581
SmiMI	CAYNNNNRTG	1 cut(s)	789
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse8387I	CCTGCAGG	1 cut(s)	585
Sse9I	AATT	4 cut(s)	264, 408, 587, 961
SsiI	CCGC	3 cut(s)	83, 254, 841
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	2 cut(s)	389, 970
StyD4I	CCNGG	2 cut(s)	886, 953
TaaI	ACNGT	4 cut(s)	196, 436, 523, 763
TaiI	ACGT	2 cut(s)	114, 738
TaqI	TCGA	3 cut(s)	66, 105, 757
TasI	AATT	4 cut(s)	264, 408, 587, 961
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	844
TfiI	GAWTC	3 cut(s)	4, 540, 854
Tru1I	TTAA	3 cut(s)	291, 618, 807
Tru9I	TTAA	3 cut(s)	291, 618, 807
TscAI	CASTG	2 cut(s)	81, 98
TseFI	GTSAC	4 cut(s)	130, 517, 709, 731
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	4 cut(s)	130, 517, 709, 731
TspDTI	ATGAA	4 cut(s)	152, 348, 773, 814
TspGWI	ACGGA	2 cut(s)	204, 645
TspRI	CASTG	2 cut(s)	81, 98
Van91I	CCANNNNNTGG	1 cut(s)	284
XapI	RAATTY	3 cut(s)	264, 408, 587
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	2 cut(s)	389, 970
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.