Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014558

Physical Location & Seq

Genomic Coordinates Forward (+)

78389551 .. 78400712

Gene Structure 11162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGATACTTCTACAATCCCATTCAAGATTCCTCCTTGACACCTTGTTAAATCGCCTCCAAAACATTGAAAAGGCGGTGGAGCTGGACTACCATTGGGCGGAGTTTGATGACGTCCGGTACCACATTCAGGTGACGATGAAAAACCCACACATTGTGCTGCTTTCGGTTTCGCTGCCGACCCCACCTCCGGAAACTGTGTTCTTGAGTGGGCTTCCTGCTGGGGCTATAGAGGCTATAAAGGCTGCGTATGGATCAGTAGTGCAGATTCTTGACCCACCTAGAGATGGGTTTAATCTTACATTGAAGCTCAATCTCTCTAAACTTCCTACAGATGAAGGTTCAACGAGTTCCTTTTCTAAGATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCTTACTTCGAGGACTGTTGCTTCCGATATTGATCCACTTGTTGCTCTTGTGCACCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGGCAGAAAAGGTGACCGTGGTATTTCCTATGAGATTCAAGGACTCTATTGACATTGTTCTTGCAACTTCCTTCCTGCAGGAATTTGTGGATGCAAGACGTACGGCTGGACTTAATAATGCTCCTTATTGTATGTGGTCTCCGACCCCTCCTTTAGAACTAAAGGGAGCTCCTGATGAAGCTCTATCTGTCAATGCGGGATTTGTCACTTTTGTTGTTTTACCTCGTCATGTGGAAGGCAAGAAACTGGATCGGACAGTTTGGAGTTTATCAACTTTCCATGCATATGTTAGTTATCATGTTAAGGCTCTTGATCGTGCTAAGCCTGGAATGGAGAATGCAAGGAATAATGCAGCTCAGAATAGATCCTTTAAACGGCTGGTGGGGTTGCCAGATAGTGAGAAGGACGTACACCTTGGATGCAATGAAATATTGTCATCAAAGAACTGCTCGAGGATATGCAGGAATCGTGTCTGCTGCAAATGCAACATGGATAGTAAGGAAGAACAAAGAAGTAGTTTATGTTCTACTCACCCTTGGAGCGTGATTTTAATCCGATCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

355

Amino Acids

39.63

Weight (kDa)

8.95

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	74 - 270	4.1e-39	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30825
fragaria_vesca	FvH4_3g13510 FvH4_3g13510
malus_domestica	MD10G1221300.v1.1
prunus_persica	Prupe.4G123300_v2.0.a1 Prupe.4G123300_v2.0.a1
pyrus_communis	pycom10g18690
rosa_chinensis	RchiOBHm_Chr5g0022461 RchiOBHm_Chr6g0246611 RchiOBHm_Chr6g0255501
rosa_laevigata	RLG00000032661
rosa_multiflora	Rmu_sc0005639.1_g000004
rosa_roxburghii	Rroxscaffold_1G00056590
rosa_rugosa	Rorug05G0073700 Rorug05G0073800
rosa_samantha	Rh5AG160700
rosa_wichuraiana	Rw5G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
Acc65I	GGTACC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	3 cut(s)	74, 98, 698
AclWI	GGATC	5 cut(s)	259, 443, 759, 861, 1053
AcoI	YGGCCR	1 cut(s)	473
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	3 cut(s)	119, 604, 912
AfiI	CCNNNNNNNGG	6 cut(s)	97, 127, 187, 284, 478, 876
AgsI	TTSAA	5 cut(s)	24, 68, 304, 342, 541
AjnI	CCWGG	1 cut(s)	826
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	7 cut(s)	82, 307, 392, 418, 671, 683, 857
AluI	AGCT	7 cut(s)	82, 307, 392, 418, 671, 683, 857
Alw21I	GWGCWC	3 cut(s)	394, 471, 673
Alw26I	GTCTC	1 cut(s)	645
Alw44I	GTGCAC	1 cut(s)	467
AlwI	GGATC	5 cut(s)	259, 443, 759, 861, 1053
Ama87I	CYCGRG	1 cut(s)	952
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	1 cut(s)	473
ApaLI	GTGCAC	1 cut(s)	467
ApeKI	GCWGC	6 cut(s)	157, 172, 242, 415, 854, 978
ApoI	RAATTY	1 cut(s)	584
Asp718I	GGTACC	1 cut(s)	117
AsuHPI	GGTGA	3 cut(s)	142, 526, 1025
AvaI	CYCGRG	1 cut(s)	952
AxyI	CCTNAGG	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	117
BanII	GRGCYC	2 cut(s)	394, 673
Bbv12I	GWGCWC	3 cut(s)	394, 471, 673
BbvI	GCAGC	6 cut(s)	144, 159, 229, 427, 866, 965
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	2 cut(s)	621, 893
BciT130I	CCWGG	1 cut(s)	828
BcoDI	GTCTC	1 cut(s)	645
BfaI	CTAG	2 cut(s)	279, 386
BfmI	CTRYAG	3 cut(s)	225, 327, 578
BisI	GCNGC	6 cut(s)	158, 173, 243, 416, 855, 979
BlpI	GCTNAGC	1 cut(s)	822
BlsI	GCNGC	6 cut(s)	159, 174, 244, 417, 856, 980
Bme1390I	CCNGG	1 cut(s)	828
BmeT110I	CYCGRG	1 cut(s)	952
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	828
BmsI	GCATC	3 cut(s)	374, 583, 911
Bpu1102I	GCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	223
BsaBI	GATNNNNATC	2 cut(s)	447, 1052
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	3 cut(s)	519, 916, 1037
BsaWI	WCCGGW	2 cut(s)	114, 187
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	6 cut(s)	97, 127, 187, 284, 478, 876
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	753
Bse21I	CCTNAGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	931
Bse8I	GATNNNNATC	2 cut(s)	447, 1052
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	519, 916, 1037
BseGI	GGATG	2 cut(s)	598, 926
BseJI	GATNNNNATC	2 cut(s)	447, 1052
BseLI	CCNNNNNNNGG	6 cut(s)	97, 127, 187, 284, 478, 876
BseMI	GCAATG	1 cut(s)	931
BseMII	CTCAG	2 cut(s)	515, 872
BseNI	ACTGG	1 cut(s)	753
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	6 cut(s)	144, 159, 229, 427, 866, 965
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	475
BshNI	GGYRCC	1 cut(s)	117
BsiHKAI	GWGCWC	3 cut(s)	394, 471, 673
BsiHKCI	CYCGRG	1 cut(s)	952
BsiSI	CCGG	3 cut(s)	115, 188, 472
BsiWI	CGTACG	1 cut(s)	602
BslI	CCNNNNNNNGG	6 cut(s)	97, 127, 187, 284, 478, 876
BsmAI	GTCTC	1 cut(s)	645
BsmI	GAATGC	1 cut(s)	844
BsnI	GGCC	1 cut(s)	475
Bso31I	GGTCTC	1 cut(s)	645
BsoBI	CYCGRG	1 cut(s)	952
Bsp1286I	GDGCHC	3 cut(s)	394, 471, 673
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	6 cut(s)	251, 448, 751, 814, 866, 1058
Bsp1720I	GCTNAGC	1 cut(s)	822
BspACI	CCGC	3 cut(s)	74, 98, 698
BspANI	GGCC	1 cut(s)	475
BspCNI	CTCAG	2 cut(s)	514, 871
BspEI	TCCGGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	119
BspMAI	CTGCAG	1 cut(s)	582
BspPI	GGATC	5 cut(s)	259, 443, 759, 861, 1053
BspT107I	GGYRCC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	645
BsrDI	GCAATG	1 cut(s)	931
BsrFI	RCCGGY	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	753
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	3 cut(s)	519, 916, 1037
BssMI	GATC	6 cut(s)	251, 448, 751, 814, 866, 1058
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	2 cut(s)	916, 1037
Bst2UI	CCWGG	1 cut(s)	828
Bst4CI	ACNGT	4 cut(s)	196, 433, 520, 760
BstACI	GRCGYC	1 cut(s)	111
BstDEI	CTNAG	4 cut(s)	357, 501, 822, 858
BstDSI	CCRYGG	1 cut(s)	519
BstEII	GGTNACC	1 cut(s)	514
BstF5I	GGATG	2 cut(s)	598, 926
BstKTI	GATC	6 cut(s)	254, 451, 754, 817, 869, 1061
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	6 cut(s)	251, 448, 751, 814, 866, 1058
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 239, 984
BstNI	CCWGG	1 cut(s)	828
BstPI	GGTNACC	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	826
BstSFI	CTRYAG	3 cut(s)	225, 327, 578
BstSLI	GKGCMC	1 cut(s)	471
BstV1I	GCAGC	6 cut(s)	144, 159, 229, 427, 866, 965
BstX2I	RGATCY	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	866
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	475
BtgI	CCRYGG	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	598, 926
Cfr10I	RCCGGY	1 cut(s)	471
Csp6I	GTAC	3 cut(s)	118, 603, 911
CviAII	CATG	4 cut(s)	731, 782, 800, 991
CviQI	GTAC	3 cut(s)	118, 603, 911
DdeI	CTNAG	4 cut(s)	357, 501, 822, 858
DpnI	GATC	6 cut(s)	253, 450, 753, 816, 868, 1060
DpnII	GATC	6 cut(s)	251, 448, 751, 814, 866, 1058
DraI	TTTAAA	1 cut(s)	874
DraIII	CACNNNGTG	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	473
EciI	GGCGGA	1 cut(s)	113
Ecl136II	GAGCTC	2 cut(s)	392, 671
Eco130I	CCWWGG	2 cut(s)	916, 1037
Eco24I	GRGCYC	2 cut(s)	394, 673
Eco31I	GGTCTC	1 cut(s)	645
Eco53kI	GAGCTC	2 cut(s)	392, 671
Eco57I	CTGAAG	1 cut(s)	431
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	952
Eco91I	GGTNACC	1 cut(s)	514
EcoICRI	GAGCTC	2 cut(s)	392, 671
EcoO65I	GGTNACC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	826
EcoT14I	CCWWGG	2 cut(s)	916, 1037
EcoT22I	ATGCAT	1 cut(s)	787
EcoT38I	GRGCYC	2 cut(s)	394, 673
ErhI	CCWWGG	2 cut(s)	916, 1037
FaeI	CATG	4 cut(s)	734, 785, 803, 994
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FatI	CATG	4 cut(s)	730, 781, 799, 990
FauI	CCCGC	1 cut(s)	691
FauNDI	CATATG	1 cut(s)	787
Fnu4HI	GCNGC	6 cut(s)	158, 173, 243, 416, 855, 979
FokI	GGATG	2 cut(s)	605, 933
FriOI	GRGCYC	2 cut(s)	394, 673
Fsp4HI	GCNGC	6 cut(s)	158, 173, 243, 416, 855, 979
FspBI	CTAG	2 cut(s)	279, 386
GluI	GCNGC	6 cut(s)	158, 173, 243, 416, 855, 979
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	475
HapII	CCGG	3 cut(s)	115, 188, 472
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	734, 785, 803, 994
HinfI	GANTC	6 cut(s)	27, 265, 482, 537, 545, 967
HpaII	CCGG	3 cut(s)	115, 188, 472
HphI	GGTGA	3 cut(s)	142, 526, 1025
Hpy166II	GTNNAC	2 cut(s)	469, 913
Hpy188I	TCNGA	6 cut(s)	411, 442, 645, 756, 861, 1058
Hpy188III	TCNNGA	6 cut(s)	24, 188, 202, 269, 674, 812
Hpy8I	GTNNAC	2 cut(s)	469, 913
HpyAV	CCTTC	4 cut(s)	329, 583, 731, 898
HpyCH4III	ACNGT	4 cut(s)	196, 433, 520, 760
HpyCH4IV	ACGT	3 cut(s)	111, 601, 909
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 239, 984
HpyF3I	CTNAG	4 cut(s)	357, 501, 822, 858
HpySE526I	ACGT	3 cut(s)	111, 601, 909
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	734, 785, 803, 994
Kpn2I	TCCGGA	1 cut(s)	187
KpnI	GGTACC	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	251, 448, 751, 814, 866, 1058
LmnI	GCTCC	7 cut(s)	79, 389, 397, 628, 668, 676, 1041
Lsp1109I	GCAGC	6 cut(s)	144, 159, 229, 427, 866, 965
LweI	GCATC	3 cut(s)	374, 583, 911
MaeI	CTAG	2 cut(s)	279, 386
MaeII	ACGT	3 cut(s)	111, 601, 909
MaeIII	GTNAC	3 cut(s)	130, 514, 706
MalI	GATC	6 cut(s)	253, 450, 753, 816, 868, 1060
MboI	GATC	6 cut(s)	251, 448, 751, 814, 866, 1058
MboII	GAAGA	1 cut(s)	1016
MflI	RGATCY	1 cut(s)	866
MhlI	GDGCHC	3 cut(s)	394, 471, 673
MluCI	AATT	2 cut(s)	405, 584
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	668
MnlI	CCTC	9 cut(s)	41, 65, 195, 223, 420, 510, 660, 735, 948
Mph1103I	ATGCAT	1 cut(s)	787
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	6 cut(s)	47, 291, 615, 804, 873, 1052
MslI	CAYNNNNRTG	2 cut(s)	128, 786
MspI	CCGG	3 cut(s)	115, 188, 472
MspR9I	CCNGG	1 cut(s)	828
Mva1269I	GAATGC	1 cut(s)	844
MvaI	CCWGG	1 cut(s)	828
MwoI	GCNNNNNNNGC	3 cut(s)	230, 239, 984
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	6 cut(s)	251, 448, 751, 814, 866, 1058
NlaIII	CATG	4 cut(s)	734, 785, 803, 994
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	3 cut(s)	130, 514, 706
NsiI	ATGCAT	1 cut(s)	787
PaeR7I	CTCGAG	1 cut(s)	952
PctI	GAATGC	1 cut(s)	844
PfeI	GAWTC	5 cut(s)	27, 265, 482, 537, 967
Pfl23II	CGTACG	1 cut(s)	602
PkrI	GCNGC	6 cut(s)	159, 174, 244, 417, 856, 980
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
Psp124BI	GAGCTC	2 cut(s)	394, 673
Psp6I	CCWGG	1 cut(s)	826
PspEI	GGTNACC	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	826
PspLI	CGTACG	1 cut(s)	602
PspN4I	GGNNCC	1 cut(s)	119
PspXI	VCTCGAGB	1 cut(s)	952
PsrI	GAACNNNNNNTAC	2 cut(s)	1009, 1041
PstI	CTGCAG	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	866
RsaI	GTAC	3 cut(s)	119, 604, 912
RsaNI	GTAC	3 cut(s)	118, 603, 911
RseI	CAYNNNNRTG	2 cut(s)	128, 786
SacI	GAGCTC	2 cut(s)	394, 673
SaqAI	TTAA	6 cut(s)	47, 291, 615, 804, 873, 1052
SatI	GCNGC	6 cut(s)	158, 173, 243, 416, 855, 979
Sau3AI	GATC	6 cut(s)	251, 448, 751, 814, 866, 1058
SbfI	CCTGCAGG	1 cut(s)	582
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	1 cut(s)	828
SdaI	CCTGCAGG	1 cut(s)	582
SduI	GDGCHC	3 cut(s)	394, 471, 673
SfaNI	GCATC	3 cut(s)	374, 583, 911
SfcI	CTRYAG	3 cut(s)	225, 327, 578
Sfr274I	CTCGAG	1 cut(s)	952
SlaI	CTCGAG	1 cut(s)	952
SmiMI	CAYNNNNRTG	2 cut(s)	128, 786
SmlI	CTYRAG	2 cut(s)	202, 952
SmoI	CTYRAG	2 cut(s)	202, 952
Sse8387I	CCTGCAGG	1 cut(s)	582
Sse9I	AATT	2 cut(s)	405, 584
SsiI	CCGC	3 cut(s)	74, 98, 698
SspI	AATATT	1 cut(s)	933
SspMI	CTAG	2 cut(s)	279, 386
SstI	GAGCTC	2 cut(s)	394, 673
StyD4I	CCNGG	1 cut(s)	826
StyI	CCWWGG	2 cut(s)	916, 1037
TaaI	ACNGT	4 cut(s)	196, 433, 520, 760
TaiI	ACGT	3 cut(s)	114, 604, 912
TaqI	TCGA	2 cut(s)	425, 953
TasI	AATT	2 cut(s)	405, 584
TfiI	GAWTC	5 cut(s)	27, 265, 482, 537, 967
Tru1I	TTAA	6 cut(s)	47, 291, 615, 804, 873, 1052
Tru9I	TTAA	6 cut(s)	47, 291, 615, 804, 873, 1052
TseFI	GTSAC	3 cut(s)	130, 514, 706
TseI	GCWGC	6 cut(s)	157, 172, 242, 415, 854, 978
Tsp45I	GTSAC	3 cut(s)	130, 514, 706
TspDTI	ATGAA	4 cut(s)	152, 348, 693, 942
VneI	GTGCAC	1 cut(s)	467
XapI	RAATTY	1 cut(s)	584
XhoI	CTCGAG	1 cut(s)	952
XspI	CTAG	2 cut(s)	279, 386
ZraI	GACGTC	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.