Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014558

Physical Location & Seq

Genomic Coordinates Forward (+)

10804592 .. 10806182

Gene Structure 1591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGACACGCACCTTGTTAAAAAAACCCACACATTGTGCCCCACCTCCGGAAACTGTGTTCTTCAGTGGGCTTCCTGCTGGGGCTATAGAGGCTATCCATACGTGCAGATTCTTGACCCACCTAGAGATGGGTTTAATCTTACATTGAACCTCAATCTCTCTAAACTTCCTACAGACGAAGAGTACAAACACGCTCTTTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCCTGCTTTGAGGACCGTTGCTTCCGATATTGATCCACTTGTTAGCTCTTGTGCATCGGCCAAAGGATGCACCAAAGGAATCCTTTTTCCTTATTCCTCAGAAAAGGTGACCGTGGTATTTCCTATGAGATTCAAGGACTCTATTGACATTGTTCTTGCAACTTCCTTCCTGCAGGAATTTGTGGATGCAAGACATACGGCTGGACTTAATAATGCTCCTTATTGTATGTGGTCTCCGACCCCTCCTTTAGAACTAAAGGGAGCTCCTAATATAGCTCTATCTGTCAATGCGGGATTTGTCACTTTTGTTGTTTTACCTCGTCATGCGGAGGGCAAGAAACTGGATCAGACAGTTTGGAGTCTATCAACTTTCCATGCATATGTTAGTAATCATGTTAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

222

Amino Acids

24.48

Weight (kDa)

8.87

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	36 - 221	9.1e-30	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0014558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30825
fragaria_vesca	FvH4_3g13510 FvH4_3g13510
malus_domestica	MD10G1221300.v1.1
prunus_persica	Prupe.4G123300_v2.0.a1 Prupe.4G123300_v2.0.a1
pyrus_communis	pycom10g18690
rosa_chinensis	RchiOBHm_Chr5g0022461 RchiOBHm_Chr6g0246611 RchiOBHm_Chr6g0255501
rosa_laevigata	RLG00000032661
rosa_multiflora	Rmu_sc0005639.1_g000004
rosa_roxburghii	Rroxscaffold_1G00056590
rosa_rugosa	Rorug05G0073700 Rorug05G0073800
rosa_samantha	Rh5AG160700
rosa_wichuraiana	Rw5G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	2 cut(s)	554, 590
AclWI	GGATC	2 cut(s)	290, 615
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	2 cut(s)	47, 278
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	47, 128
AgsI	TTSAA	2 cut(s)	148, 397
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
AluBI	AGCT	4 cut(s)	239, 309, 527, 539
AluI	AGCT	4 cut(s)	239, 309, 527, 539
Alw21I	GWGCWC	2 cut(s)	241, 529
Alw26I	GTCTC	1 cut(s)	501
AlwI	GGATC	2 cut(s)	290, 615
Aor13HI	TCCGGA	1 cut(s)	47
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	41
BanII	GRGCYC	2 cut(s)	241, 529
Bbv12I	GWGCWC	2 cut(s)	241, 529
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	501
BfaI	CTAG	2 cut(s)	123, 233
BfmI	CTRYAG	3 cut(s)	85, 171, 434
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmsI	GCATC	4 cut(s)	221, 320, 326, 439
BsaAI	YACGTR	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 128
Bse1I	ACTGG	1 cut(s)	609
Bse8I	GATNNNNATC	1 cut(s)	294
BseAI	TCCGGA	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	2 cut(s)	335, 454
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	47, 128
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	609
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	323
BsiHKAI	GWGCWC	2 cut(s)	241, 529
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	47, 128
BsmAI	GTCTC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	501
Bsp1286I	GDGCHC	3 cut(s)	41, 241, 529
Bsp13I	TCCGGA	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	295, 607
BspACI	CCGC	2 cut(s)	554, 590
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	374
BspEI	TCCGGA	1 cut(s)	47
BspMAI	CTGCAG	1 cut(s)	438
BspPI	GGATC	2 cut(s)	290, 615
BspTNI	GGTCTC	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	2 cut(s)	295, 607
Bst4CI	ACNGT	4 cut(s)	56, 280, 376, 616
Bst6I	CTCTTC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	361
BstDSI	CCRYGG	1 cut(s)	375
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	335, 454
BstKTI	GATC	2 cut(s)	298, 610
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	2 cut(s)	295, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstPI	GGTNACC	1 cut(s)	370
BstSFI	CTRYAG	3 cut(s)	85, 171, 434
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	335, 454
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	3 cut(s)	587, 638, 656
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	2 cut(s)	297, 609
DpnII	GATC	2 cut(s)	295, 607
DraIII	CACNNNGTG	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	2 cut(s)	239, 527
Eco24I	GRGCYC	2 cut(s)	241, 529
Eco31I	GGTCTC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	276
Eco53kI	GAGCTC	2 cut(s)	239, 527
Eco57I	CTGAAG	2 cut(s)	47, 278
Eco91I	GGTNACC	1 cut(s)	370
EcoICRI	GAGCTC	2 cut(s)	239, 527
EcoO65I	GGTNACC	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	643
EcoT38I	GRGCYC	2 cut(s)	241, 529
FaeI	CATG	3 cut(s)	590, 641, 659
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FatI	CATG	3 cut(s)	586, 637, 655
FauI	CCCGC	1 cut(s)	547
FauNDI	CATATG	1 cut(s)	643
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	2 cut(s)	342, 461
FriOI	GRGCYC	2 cut(s)	241, 529
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	2 cut(s)	123, 233
GluI	GCNGC	1 cut(s)	263
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	3 cut(s)	590, 641, 659
HinfI	GANTC	5 cut(s)	109, 342, 393, 401, 622
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	5 cut(s)	258, 289, 364, 501, 612
Hpy188III	TCNNGA	2 cut(s)	48, 113
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	4 cut(s)	56, 280, 376, 616
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	8 cut(s)	106, 212, 317, 333, 422, 436, 452, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	1 cut(s)	361
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	590, 641, 659
Kpn2I	TCCGGA	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	295, 607
LmnI	GCTCC	5 cut(s)	236, 244, 484, 524, 532
LpnPI	CCDG	8 cut(s)	61, 64, 88, 279, 422, 446, 450, 590
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	4 cut(s)	221, 320, 326, 439
MaeI	CTAG	2 cut(s)	123, 233
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	370, 562
MalI	GATC	2 cut(s)	297, 609
MboI	GATC	2 cut(s)	295, 607
MboII	GAAGA	2 cut(s)	53, 191
MhlI	GDGCHC	3 cut(s)	41, 241, 529
MluCI	AATT	2 cut(s)	252, 440
MlyI	GAGTC	2 cut(s)	395, 631
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	8 cut(s)	55, 83, 161, 267, 370, 516, 586, 591
Mph1103I	ATGCAT	1 cut(s)	643
MroI	TCCGGA	1 cut(s)	47
MseI	TTAA	4 cut(s)	18, 135, 471, 660
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	90
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	2 cut(s)	295, 607
NlaIII	CATG	3 cut(s)	590, 641, 659
NmuCI	GTSAC	2 cut(s)	370, 562
NsiI	ATGCAT	1 cut(s)	643
PfeI	GAWTC	3 cut(s)	109, 342, 393
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	2 cut(s)	395, 630
PpsI	GAGTC	2 cut(s)	395, 630
Ppu21I	YACGTR	1 cut(s)	103
Psp124BI	GAGCTC	2 cut(s)	241, 529
PspEI	GGTNACC	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	438
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	2 cut(s)	241, 529
SaqAI	TTAA	4 cut(s)	18, 135, 471, 660
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	2 cut(s)	295, 607
Sau96I	GGNCC	1 cut(s)	276
SbfI	CCTGCAGG	1 cut(s)	438
SchI	GAGTC	2 cut(s)	395, 631
SdaI	CCTGCAGG	1 cut(s)	438
SduI	GDGCHC	3 cut(s)	41, 241, 529
SfaNI	GCATC	4 cut(s)	221, 320, 326, 439
SfcI	CTRYAG	3 cut(s)	85, 171, 434
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse8387I	CCTGCAGG	1 cut(s)	438
Sse9I	AATT	2 cut(s)	252, 440
SsiI	CCGC	2 cut(s)	554, 590
SspMI	CTAG	2 cut(s)	123, 233
SstI	GAGCTC	2 cut(s)	241, 529
TaaI	ACNGT	4 cut(s)	56, 280, 376, 616
TaiI	ACGT	1 cut(s)	105
TasI	AATT	2 cut(s)	252, 440
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	3 cut(s)	109, 342, 393
Tru1I	TTAA	4 cut(s)	18, 135, 471, 660
Tru9I	TTAA	4 cut(s)	18, 135, 471, 660
TscAI	CASTG	1 cut(s)	71
TseFI	GTSAC	2 cut(s)	370, 562
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	2 cut(s)	370, 562
TspRI	CASTG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	1 cut(s)	440
XspI	CTAG	2 cut(s)	123, 233
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.