Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005639.1

Orthogroup ID

OG0014558

Physical Location & Seq

Genomic Coordinates Forward (+)

14022 .. 17429

Gene Structure 3408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005639.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgatacttctacaatcccattcaagattcctccttgacaccttgttaagtcgcctccaaaacattgaaaaggcggtggagctggactaccattgggccgagttcgatgacgtccggtaccacattcaggtgacgatgaaaaacccacacattgtgctgctttcggtttcgctgccgaccccacctccggaaactgtgttcttgagtgggcttcctgctggggctatagaggctataaaggctgcgtatggatcagtagtgcagattcttgacccacctagagatgggtttaatcttacattgaagctcaatctctctaaacttcctacagatgaagagtacaaacatgcccttttggtaaagattgcatctgtaagggaagtggtgctaggagctccattgagagtaattctgaagcagcttgcttcgaggacttttgcttccgatgttgatccacttgttgctcttgtgcatcggccaaaggaatcctttttccttattcctcaggaatttgtggatgcaagacgtacggctggacttaataatgctccttattgtatgtggtctccgacccctcctttagaactaaagggagctcctgatgaagctctatctgtcaatgcgggatttgtcacttttgttgttttacctcgtcatgtggaaggcaagaaactggatcggacagtttggagtttatcaactttccatgcatatgttagttatcatgttaagtgttcagagggattcatgcatacaaggatgcgacgtcgtgtagaatctttgattgaggctcttgatcgtgctaagcctggaatggagaatgcaaggaataatgcagcccagaatagatactttaaacggctgagcctcaaggaagctaggaaccattcttttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

299

Amino Acids

33.77

Weight (kDa)

9.26

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30825
fragaria_vesca	FvH4_3g13510 FvH4_3g13510
malus_domestica	MD10G1221300.v1.1
prunus_persica	Prupe.4G123300_v2.0.a1 Prupe.4G123300_v2.0.a1
pyrus_communis	pycom10g18690
rosa_chinensis	RchiOBHm_Chr5g0022461 RchiOBHm_Chr6g0246611 RchiOBHm_Chr6g0255501
rosa_laevigata	RLG00000032661
rosa_multiflora	Rmu_sc0005639.1_g000004
rosa_roxburghii	Rroxscaffold_1G00056590
rosa_rugosa	Rorug05G0073700 Rorug05G0073800
rosa_samantha	Rh5AG160700
rosa_wichuraiana	Rw5G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	114, 769
Acc65I	GGTACC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	2 cut(s)	74, 623
AclWI	GGATC	3 cut(s)	259, 446, 684
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	2 cut(s)	111, 766
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	3 cut(s)	119, 341, 529
AfiI	CCNNNNNNNGG	3 cut(s)	127, 187, 284
AgsI	TTSAA	3 cut(s)	24, 68, 304
AjnI	CCWGG	1 cut(s)	808
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	7 cut(s)	82, 307, 395, 421, 596, 608, 878
AluI	AGCT	7 cut(s)	82, 307, 395, 421, 596, 608, 878
Alw21I	GWGCWC	2 cut(s)	397, 598
Alw26I	GTCTC	1 cut(s)	570
AlwI	GGATC	3 cut(s)	259, 446, 684
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	2 cut(s)	96, 476
ApeKI	GCWGC	5 cut(s)	157, 172, 242, 418, 836
ApoI	RAATTY	1 cut(s)	509
Asp718I	GGTACC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	142
AxyI	CCTNAGG	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	117
BanII	GRGCYC	2 cut(s)	397, 598
Bbv12I	GWGCWC	2 cut(s)	397, 598
BbvI	GCAGC	5 cut(s)	144, 159, 229, 430, 848
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	2 cut(s)	546, 875
BciT130I	CCWGG	1 cut(s)	810
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	3 cut(s)	279, 389, 879
BfmI	CTRYAG	2 cut(s)	225, 327
BisI	GCNGC	5 cut(s)	158, 173, 243, 419, 837
BlpI	GCTNAGC	2 cut(s)	804, 863
BlsI	GCNGC	5 cut(s)	159, 174, 244, 420, 838
Bme1390I	CCNGG	1 cut(s)	810
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	119, 884
BmrFI	CCNGG	1 cut(s)	810
BmsI	GCATC	4 cut(s)	377, 481, 508, 750
Bpu1102I	GCTNAGC	2 cut(s)	804, 863
BpuEI	CTTGAG	2 cut(s)	223, 854
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	2 cut(s)	111, 766
BsaI	GGTCTC	1 cut(s)	570
BsaWI	WCCGGW	2 cut(s)	114, 187
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 187, 284
Bse1I	ACTGG	1 cut(s)	678
Bse21I	CCTNAGG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	810
BseGI	GGATG	2 cut(s)	523, 765
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	127, 187, 284
BseMII	CTCAG	2 cut(s)	518, 854
BseNI	ACTGG	1 cut(s)	678
BseXI	GCAGC	5 cut(s)	144, 159, 229, 430, 848
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	98, 478
BshNI	GGYRCC	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	397, 598
BsiSI	CCGG	2 cut(s)	115, 188
BsiWI	CGTACG	1 cut(s)	527
BslI	CCNNNNNNNGG	3 cut(s)	127, 187, 284
BsmAI	GTCTC	1 cut(s)	570
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	2 cut(s)	98, 478
Bso31I	GGTCTC	1 cut(s)	570
Bsp1286I	GDGCHC	2 cut(s)	397, 598
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	251, 451, 676, 796
Bsp1720I	GCTNAGC	2 cut(s)	804, 863
BspACI	CCGC	2 cut(s)	74, 623
BspANI	GGCC	2 cut(s)	98, 478
BspCNI	CTCAG	2 cut(s)	517, 855
BspEI	TCCGGA	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	119, 884
BspPI	GGATC	3 cut(s)	259, 446, 684
BspT107I	GGYRCC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	678
BssMI	GATC	4 cut(s)	251, 451, 676, 796
BssNI	GRCGYC	2 cut(s)	111, 766
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	2 cut(s)	196, 685
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	2 cut(s)	111, 766
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	3 cut(s)	504, 804, 863
BstF5I	GGATG	2 cut(s)	523, 765
BstKTI	GATC	4 cut(s)	254, 454, 679, 799
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	4 cut(s)	251, 451, 676, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 239
BstNI	CCWGG	1 cut(s)	810
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	808
BstSFI	CTRYAG	2 cut(s)	225, 327
BstV1I	GCAGC	5 cut(s)	144, 159, 229, 430, 848
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	98, 478
BtsCI	GGATG	2 cut(s)	523, 765
Cac8I	GCNNGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	96
Csp6I	GTAC	3 cut(s)	118, 340, 528
CviAII	CATG	5 cut(s)	347, 656, 707, 725, 748
CviQI	GTAC	3 cut(s)	118, 340, 528
DdeI	CTNAG	3 cut(s)	504, 804, 863
DpnI	GATC	4 cut(s)	253, 453, 678, 798
DpnII	GATC	4 cut(s)	251, 451, 676, 796
DraI	TTTAAA	1 cut(s)	856
DraIII	CACNNNGTG	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	476
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Ecl136II	GAGCTC	2 cut(s)	395, 596
Eco24I	GRGCYC	2 cut(s)	397, 598
Eco31I	GGTCTC	1 cut(s)	570
Eco53kI	GAGCTC	2 cut(s)	395, 596
Eco57I	CTGAAG	1 cut(s)	434
Eco81I	CCTNAGG	1 cut(s)	504
EcoICRI	GAGCTC	2 cut(s)	395, 596
EcoRII	CCWGG	1 cut(s)	808
EcoT22I	ATGCAT	2 cut(s)	712, 753
EcoT38I	GRGCYC	2 cut(s)	397, 598
FaeI	CATG	5 cut(s)	350, 659, 710, 728, 751
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FatI	CATG	5 cut(s)	346, 655, 706, 724, 747
FauI	CCCGC	1 cut(s)	616
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	5 cut(s)	158, 173, 243, 419, 837
FokI	GGATG	2 cut(s)	530, 772
FriOI	GRGCYC	2 cut(s)	397, 598
Fsp4HI	GCNGC	5 cut(s)	158, 173, 243, 419, 837
FspBI	CTAG	3 cut(s)	279, 389, 879
GluI	GCNGC	5 cut(s)	158, 173, 243, 419, 837
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	98, 478
HapII	CCGG	2 cut(s)	115, 188
Hin1I	GRCGYC	2 cut(s)	111, 766
Hin1II	CATG	5 cut(s)	350, 659, 710, 728, 751
HinfI	GANTC	5 cut(s)	27, 265, 485, 744, 776
HpaII	CCGG	2 cut(s)	115, 188
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	5 cut(s)	414, 445, 570, 681, 739
Hpy188III	TCNNGA	7 cut(s)	24, 188, 202, 269, 506, 599, 794
Hpy99I	CGWCG	2 cut(s)	768, 771
HpyAV	CCTTC	1 cut(s)	656
HpyCH4III	ACNGT	2 cut(s)	196, 685
HpyCH4IV	ACGT	3 cut(s)	111, 526, 766
HpyCH4V	TGCA	8 cut(s)	262, 368, 472, 521, 710, 751, 824, 836
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 239
HpyF3I	CTNAG	3 cut(s)	504, 804, 863
HpySE526I	ACGT	3 cut(s)	111, 526, 766
Hsp92I	GRCGYC	2 cut(s)	111, 766
Hsp92II	CATG	5 cut(s)	350, 659, 710, 728, 751
Kpn2I	TCCGGA	1 cut(s)	187
KpnI	GGTACC	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	251, 451, 676, 796
LmnI	GCTCC	6 cut(s)	79, 392, 400, 553, 593, 601
Lsp1109I	GCAGC	5 cut(s)	144, 159, 229, 430, 848
LweI	GCATC	4 cut(s)	377, 481, 508, 750
MaeI	CTAG	3 cut(s)	279, 389, 879
MaeII	ACGT	3 cut(s)	111, 526, 766
MaeIII	GTNAC	2 cut(s)	130, 631
MalI	GATC	4 cut(s)	253, 453, 678, 798
MboI	GATC	4 cut(s)	251, 451, 676, 796
MboII	GAAGA	1 cut(s)	347
MhlI	GDGCHC	2 cut(s)	397, 598
MluCI	AATT	3 cut(s)	408, 509, 895
MmeI	TCCRAC	1 cut(s)	593
Mph1103I	ATGCAT	2 cut(s)	712, 753
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	7 cut(s)	47, 291, 540, 729, 855, 894, 898
MslI	CAYNNNNRTG	2 cut(s)	128, 711
MspI	CCGG	2 cut(s)	115, 188
MspR9I	CCNGG	1 cut(s)	810
Mva1269I	GAATGC	1 cut(s)	826
MvaI	CCWGG	1 cut(s)	810
MwoI	GCNNNNNNNGC	2 cut(s)	230, 239
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	4 cut(s)	251, 451, 676, 796
NlaIII	CATG	5 cut(s)	350, 659, 710, 728, 751
NlaIV	GGNNCC	2 cut(s)	119, 884
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	130, 631
NsiI	ATGCAT	2 cut(s)	712, 753
NspI	RCATGY	1 cut(s)	350
PacI	TTAATTAA	1 cut(s)	898
PctI	GAATGC	1 cut(s)	826
PfeI	GAWTC	5 cut(s)	27, 265, 485, 744, 776
Pfl23II	CGTACG	1 cut(s)	527
PkrI	GCNGC	5 cut(s)	159, 174, 244, 420, 838
Psp124BI	GAGCTC	2 cut(s)	397, 598
Psp6I	CCWGG	1 cut(s)	808
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	808
PspLI	CGTACG	1 cut(s)	527
PspN4I	GGNNCC	2 cut(s)	119, 884
PspPI	GGNCC	1 cut(s)	96
RsaI	GTAC	3 cut(s)	119, 341, 529
RsaNI	GTAC	3 cut(s)	118, 340, 528
RseI	CAYNNNNRTG	2 cut(s)	128, 711
SacI	GAGCTC	2 cut(s)	397, 598
SaqAI	TTAA	7 cut(s)	47, 291, 540, 729, 855, 894, 898
SatI	GCNGC	5 cut(s)	158, 173, 243, 419, 837
Sau3AI	GATC	4 cut(s)	251, 451, 676, 796
Sau96I	GGNCC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	810
SduI	GDGCHC	2 cut(s)	397, 598
SfaNI	GCATC	4 cut(s)	377, 481, 508, 750
SfcI	CTRYAG	2 cut(s)	225, 327
SmiMI	CAYNNNNRTG	2 cut(s)	128, 711
SmlI	CTYRAG	2 cut(s)	202, 869
SmoI	CTYRAG	2 cut(s)	202, 869
Sse9I	AATT	3 cut(s)	408, 509, 895
SsiI	CCGC	2 cut(s)	74, 623
SspMI	CTAG	3 cut(s)	279, 389, 879
SstI	GAGCTC	2 cut(s)	397, 598
StyD4I	CCNGG	1 cut(s)	808
TaaI	ACNGT	2 cut(s)	196, 685
TaiI	ACGT	3 cut(s)	114, 529, 769
TaqI	TCGA	2 cut(s)	105, 428
TasI	AATT	3 cut(s)	408, 509, 895
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	5 cut(s)	27, 265, 485, 744, 776
Tru1I	TTAA	7 cut(s)	47, 291, 540, 729, 855, 894, 898
Tru9I	TTAA	7 cut(s)	47, 291, 540, 729, 855, 894, 898
TseFI	GTSAC	2 cut(s)	130, 631
TseI	GCWGC	5 cut(s)	157, 172, 242, 418, 836
Tsp45I	GTSAC	2 cut(s)	130, 631
TspDTI	ATGAA	4 cut(s)	152, 348, 618, 736
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	3 cut(s)	279, 389, 879
ZraI	GACGTC	2 cut(s)	112, 767
Zsp2I	ATGCAT	2 cut(s)	712, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.