Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014558

Physical Location & Seq

Genomic Coordinates Forward (+)

31993378 .. 31997141

Gene Structure 3764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1221300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATTCTATTGCAGTCCCACTCAAGATTTCTACTCGACACCTTGCTCAATCGCCTCCAAAACATCGAGAAGGCGGTGGAGGCGGACTACCACTGGGCCGAGTTCGACGACGTTCGCTACCACATTCAGGTGACGATGAAGAACCCACATATATTGTTGCTTTCGGTATCGCTACCGACTCCACCTCCGGAAACTGTGTTCTTGGGCGGCCTTCCCTCCGGAGCTATAGAGGCTATAAAGGCTGCATACGGCGCGGTGGTTCAAATTCTTGACCCCCCAAGAGATGGGTTTAATCTTACCTTGAAGCTCAATCTCAACAAACTTCCTCCAGATGAAGAGTACAAACATGCTCTTTTGCTAAAGATTGCATCTGTAAGAGAAGTGGTGCTAGGTGCTCCATTGCGAGGGGTTCTGAAGAAGCTTGGTGCAAGGAATGTTGCGTCCAATACTGATGGGCTTGTCGCTCTTTTGCATCGACCAAACGAGTCCTTTTTCCTTATTCCTCAGGTAGACAAAGTGACGGTAGTGTTCCCTATGAGATTCAAGGACTCTATAGATATTGTTCTTGCAACTTCCTTCTTGCAGGAATTTGTGGAAGCAAGACGTGCAGCTGGACTTAATAGCGCCCCTCCTTGTTTGTGGTCTCCTACCCCTCCTTTAGAACTAAAGGAAGCTCCCACTGAAGCACTGTCTGCCAATGCAGGATTTGTCACTTTTGTTATTTTCCCTCGTCATGTGGAAGGCAAGAAATTGGATCGAACAGTTTGGAGTTTATCAACTTTTCATGCTTATGTTAGTTACCATGTTAAGTGTTCAGAGGGTTTCATGCATACAAGGATGAGACGTCGCGTGGAATCTTTGATTGAGGCTCTTGATCGTGCTAAACCCGGCATGGAAGATGGAAAGAACGCTGCTCAAAGTAGATCCTTCAAACGGCTGCCTGAAGGAAGCCAGGACCAATTCAAGCTAAAAAAGGCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

328

Amino Acids

36.62

Weight (kDa)

9.21

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	74 - 296	2.3e-55	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30825
fragaria_vesca	FvH4_3g13510 FvH4_3g13510
malus_domestica	MD10G1221300.v1.1
prunus_persica	Prupe.4G123300_v2.0.a1 Prupe.4G123300_v2.0.a1
pyrus_communis	pycom10g18690
rosa_chinensis	RchiOBHm_Chr5g0022461 RchiOBHm_Chr6g0246611 RchiOBHm_Chr6g0255501
rosa_laevigata	RLG00000032661
rosa_multiflora	Rmu_sc0005639.1_g000004
rosa_roxburghii	Rroxscaffold_1G00056590
rosa_rugosa	Rorug05G0073700 Rorug05G0073800
rosa_samantha	Rh5AG160700
rosa_wichuraiana	Rw5G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	847
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	510
AccII	CGCG	2 cut(s)	254, 849
AccIII	TCCGGA	2 cut(s)	187, 218
AciI	CCGC	4 cut(s)	74, 83, 207, 254
AclWI	GGATC	2 cut(s)	762, 918
AcsI	RAATTY	2 cut(s)	264, 587
AcuI	CTGAAG	3 cut(s)	434, 702, 963
AcyI	GRCGYC	1 cut(s)	844
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	4 cut(s)	127, 284, 404, 933
AgsI	TTSAA	5 cut(s)	263, 304, 544, 931, 964
AjiI	CACGTC	1 cut(s)	605
AjnI	CCWGG	1 cut(s)	951
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	6 cut(s)	224, 307, 421, 611, 674, 967
AluI	AGCT	6 cut(s)	224, 307, 421, 611, 674, 967
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	2 cut(s)	648, 835
AlwI	GGATC	2 cut(s)	762, 918
Aor13HI	TCCGGA	2 cut(s)	187, 218
AoxI	GGCC	2 cut(s)	96, 208
ApeKI	GCWGC	4 cut(s)	242, 608, 911, 937
ApoI	RAATTY	2 cut(s)	264, 587
AspLEI	GCGC	2 cut(s)	254, 626
AspS9I	GGNCC	2 cut(s)	96, 955
AsuC2I	CCSGG	1 cut(s)	888
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	955
AxyI	CCTNAGG	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	4 cut(s)	229, 620, 898, 924
BccI	CCATC	3 cut(s)	278, 446, 893
BceAI	ACGGC	2 cut(s)	265, 950
BciT130I	CCWGG	1 cut(s)	953
BcnI	CCSGG	1 cut(s)	888
BcoDI	GTCTC	2 cut(s)	648, 835
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	2 cut(s)	225, 552
BfoI	RGCGCY	1 cut(s)	627
BisI	GCNGC	5 cut(s)	208, 243, 609, 912, 938
BlsI	GCNGC	5 cut(s)	209, 244, 610, 913, 939
Bme1390I	CCNGG	2 cut(s)	888, 953
Bme18I	GGWCC	1 cut(s)	955
BmgBI	CACGTC	1 cut(s)	605
BmgT120I	GGNCC	2 cut(s)	96, 955
BmrFI	CCNGG	2 cut(s)	888, 953
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	377, 481
BmuI	ACTGGG	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	7
BpuMI	CCSGG	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	844
BsaI	GGTCTC	1 cut(s)	648
BsaWI	WCCGGW	2 cut(s)	187, 218
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 284, 404, 933
Bse1I	ACTGG	1 cut(s)	98
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	398
BseAI	TCCGGA	2 cut(s)	187, 218
BseBI	CCWGG	1 cut(s)	953
BseGI	GGATG	1 cut(s)	843
BseLI	CCNNNNNNNGG	4 cut(s)	127, 284, 404, 933
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	4 cut(s)	229, 620, 898, 924
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	2 cut(s)	254, 849
BshFI	GGCC	2 cut(s)	98, 210
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	3 cut(s)	188, 219, 888
BslI	CCNNNNNNNGG	4 cut(s)	127, 284, 404, 933
BsmAI	GTCTC	2 cut(s)	648, 835
BsmBI	CGTCTC	1 cut(s)	835
BsnI	GGCC	2 cut(s)	98, 210
Bso31I	GGTCTC	1 cut(s)	648
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp13I	TCCGGA	2 cut(s)	187, 218
Bsp143I	GATC	3 cut(s)	754, 874, 923
BspACI	CCGC	4 cut(s)	74, 83, 207, 254
BspANI	GGCC	2 cut(s)	98, 210
BspCNI	CTCAG	1 cut(s)	517
BspEI	TCCGGA	2 cut(s)	187, 218
BspFNI	CGCG	2 cut(s)	254, 849
BspPI	GGATC	2 cut(s)	762, 918
BspTNI	GGTCTC	1 cut(s)	648
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	98
BssMI	GATC	3 cut(s)	754, 874, 923
BssNI	GRCGYC	1 cut(s)	844
Bst2UI	CCWGG	1 cut(s)	953
Bst4CI	ACNGT	4 cut(s)	196, 523, 690, 763
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	844
BstAPI	GCANNNNNTGC	2 cut(s)	605, 692
BstDEI	CTNAG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	843
BstFNI	CGCG	2 cut(s)	254, 849
BstH2I	RGCGCY	1 cut(s)	627
BstHHI	GCGC	2 cut(s)	254, 626
BstKTI	GATC	3 cut(s)	757, 877, 926
BstMAI	GTCTC	2 cut(s)	648, 835
BstMBI	GATC	3 cut(s)	754, 874, 923
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 230, 239, 251, 605, 692
BstNI	CCWGG	1 cut(s)	953
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	886, 951
BstSFI	CTRYAG	2 cut(s)	225, 552
BstUI	CGCG	2 cut(s)	254, 849
BstV1I	GCAGC	4 cut(s)	229, 620, 898, 924
BstX2I	RGATCY	1 cut(s)	923
BstYI	RGATCY	1 cut(s)	923
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	98, 210
BtrI	CACGTC	1 cut(s)	605
BtsCI	GGATG	1 cut(s)	843
BtsIMutI	CAGTG	3 cut(s)	91, 678, 686
CfoI	GCGC	2 cut(s)	254, 626
Cfr13I	GGNCC	2 cut(s)	96, 955
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	340
CspCI	CAANNNNNGTGG	2 cut(s)	135, 170
CviAII	CATG	7 cut(s)	347, 734, 785, 803, 826, 892, 978
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	3 cut(s)	756, 876, 925
DpnII	GATC	3 cut(s)	754, 874, 923
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	955
Eco57I	CTGAAG	3 cut(s)	434, 702, 963
Eco81I	CCTNAGG	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	951
EcoT22I	ATGCAT	1 cut(s)	831
Esp3I	CGTCTC	1 cut(s)	835
FaeI	CATG	7 cut(s)	350, 737, 788, 806, 829, 895, 981
FatI	CATG	7 cut(s)	346, 733, 784, 802, 825, 891, 977
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	5 cut(s)	208, 243, 609, 912, 938
FokI	GGATG	1 cut(s)	850
Fsp4HI	GCNGC	5 cut(s)	208, 243, 609, 912, 938
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	2 cut(s)	253, 625
GluI	GCNGC	5 cut(s)	208, 243, 609, 912, 938
GsuI	CTGGAG	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	98, 210
HapII	CCGG	3 cut(s)	188, 219, 888
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	2 cut(s)	254, 626
Hin1I	GRCGYC	1 cut(s)	844
Hin1II	CATG	7 cut(s)	350, 737, 788, 806, 829, 895, 981
Hin6I	GCGC	2 cut(s)	252, 624
HinP1I	GCGC	2 cut(s)	252, 624
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	6 cut(s)	4, 178, 485, 540, 548, 854
HpaII	CCGG	3 cut(s)	188, 219, 888
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	2 cut(s)	414, 817
Hpy188III	TCNNGA	7 cut(s)	24, 67, 188, 219, 269, 329, 872
Hpy8I	GTNNAC	1 cut(s)	511
Hpy99I	CGWCG	3 cut(s)	110, 113, 849
HpyAV	CCTTC	6 cut(s)	64, 221, 586, 734, 937, 938
HpyCH4III	ACNGT	4 cut(s)	196, 523, 690, 763
HpyCH4IV	ACGT	3 cut(s)	111, 604, 844
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 230, 239, 251, 605, 692
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	3 cut(s)	111, 604, 844
Hsp92I	GRCGYC	1 cut(s)	844
Hsp92II	CATG	7 cut(s)	350, 737, 788, 806, 829, 895, 981
HspAI	GCGC	2 cut(s)	252, 624
Kpn2I	TCCGGA	2 cut(s)	187, 218
Kzo9I	GATC	3 cut(s)	754, 874, 923
LmnI	GCTCC	3 cut(s)	221, 400, 679
Lsp1109I	GCAGC	4 cut(s)	229, 620, 898, 924
LweI	GCATC	2 cut(s)	377, 481
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	3 cut(s)	111, 604, 844
MaeIII	GTNAC	4 cut(s)	130, 517, 709, 797
MalI	GATC	3 cut(s)	756, 876, 925
MboI	GATC	3 cut(s)	754, 874, 923
MboII	GAAGA	4 cut(s)	151, 347, 427, 908
MflI	RGATCY	1 cut(s)	923
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	4 cut(s)	264, 587, 749, 959
MlyI	GAGTC	3 cut(s)	172, 494, 542
Mph1103I	ATGCAT	1 cut(s)	831
MroI	TCCGGA	2 cut(s)	187, 218
MseI	TTAA	3 cut(s)	291, 618, 807
MslI	CAYNNNNRTG	2 cut(s)	128, 789
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	3 cut(s)	188, 219, 888
MspR9I	CCNGG	2 cut(s)	888, 953
MvaI	CCWGG	1 cut(s)	953
MvnI	CGCG	2 cut(s)	254, 849
MwoI	GCNNNNNNNGC	6 cut(s)	80, 230, 239, 251, 605, 692
NciI	CCSGG	1 cut(s)	888
NdeII	GATC	3 cut(s)	754, 874, 923
NlaIII	CATG	7 cut(s)	350, 737, 788, 806, 829, 895, 981
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	130, 517, 709
NsiI	ATGCAT	1 cut(s)	831
NspI	RCATGY	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	4, 540, 854
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	5 cut(s)	209, 244, 610, 913, 939
PleI	GAGTC	3 cut(s)	172, 493, 542
PpsI	GAGTC	3 cut(s)	172, 493, 542
Psp6I	CCWGG	1 cut(s)	951
PspGI	CCWGG	1 cut(s)	951
PspPI	GGNCC	2 cut(s)	96, 955
PsuI	RGATCY	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	128, 789
SaqAI	TTAA	3 cut(s)	291, 618, 807
SatI	GCNGC	5 cut(s)	208, 243, 609, 912, 938
Sau3AI	GATC	3 cut(s)	754, 874, 923
Sau96I	GGNCC	2 cut(s)	96, 955
SchI	GAGTC	3 cut(s)	172, 494, 542
ScrFI	CCNGG	2 cut(s)	888, 953
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	2 cut(s)	377, 481
SfcI	CTRYAG	2 cut(s)	225, 552
SinI	GGWCC	1 cut(s)	955
SmiMI	CAYNNNNRTG	2 cut(s)	128, 789
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	4 cut(s)	264, 587, 749, 959
SsiI	CCGC	4 cut(s)	74, 83, 207, 254
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	886, 951
TaaI	ACNGT	4 cut(s)	196, 523, 690, 763
TaiI	ACGT	3 cut(s)	114, 607, 847
TaqI	TCGA	5 cut(s)	36, 66, 105, 475, 757
TasI	AATT	4 cut(s)	264, 587, 749, 959
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	3 cut(s)	4, 540, 854
Tru1I	TTAA	3 cut(s)	291, 618, 807
Tru9I	TTAA	3 cut(s)	291, 618, 807
TscAI	CASTG	3 cut(s)	98, 685, 693
TseFI	GTSAC	3 cut(s)	130, 517, 709
TseI	GCWGC	4 cut(s)	242, 608, 911, 937
Tsp45I	GTSAC	3 cut(s)	130, 517, 709
TspDTI	ATGAA	4 cut(s)	152, 348, 773, 814
TspRI	CASTG	3 cut(s)	98, 685, 693
Van91I	CCANNNNNTGG	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	955
XapI	RAATTY	2 cut(s)	264, 587
XceI	RCATGY	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	1 cut(s)	389
ZraI	GACGTC	1 cut(s)	845
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.