Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014558

Physical Location & Seq

Genomic Coordinates Reverse (-)

8072605 .. 8076381

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGATACTCCTACAATCCCACTCAAGATTCCTCCTTGACACCTTGCTCAATCGCCTCCAAAACATTGAAAAGGCGGTGGAGCTTGACTACCATTGGGCCGAGTTCGATGACGTCCGCTACCACATCCAGGTGACAATGAAGCACCCGCACATTGTGCTGCTTTCGGTTTCGCTGCCGATGCCACCTCCGGAGACTGTGTTCTTGAGTGGGCTACCTGCTGGGGGTATAGAGGCTATAAAGACTGCTTATGGATCAGTTGTGCAGATTCTTGACCCGCCTCGAGATGGGTTTAATCTTACTTTGAAGCTCAATCTCTCTAAACTTCCTACTGATGAAGAGTACAAACAAGCTCTTTTGGTAAAGATTGCATCGGTAAGGGAAGTGGTGCTTGGAGCTCCATTGAGAGTAGTTCTGAAGCAGCTTGCTTCGAGGACTGTTGCTTCCGTTATTGATCCTCTTGTTGCTCTTGTGCATCGGCCTAAGGAGTCATTTTTTCTTATTCCTCAGGCAGAAAAGGTGACCGTGGTCTTTCCTATGAGATTCAAGGACTCCATTGACATTATTTTAGCGACTTCCTTCCTGCAGGAATTTGTGGATGCAAGACGTACTGCTGGACTTAACAATGCTCCTTATTGTATGTGGTCTCCGACCCCTCCTTTAGAACTAAAGGGAGCTCCTGATGAAGCTCTATCTGTCAATGCGGGATTTGTTACTTTTGTTATTTTACCTCGTCATGTGGAAGGCAAGAAACTGGATCGGACAGTTTGGAGTTTATCCACTTTCCATGCATATGTTAGTTATCATGTTAAGTGTTCAGAGGGATTCATGCATACAAGGATGCGACGACGGGTAGAGTCTTTGATTGAGGCTCTTGATCGTGCTAAGCTTGGAGTGGAGGATGCAAGGAATTATGCAACTCAGAATAGATCCTTCAAACGGCTGAGCCTCAAGGAAGCTAGGAACCATTCTTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

326

Amino Acids

36.75

Weight (kDa)

9.22

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	74 - 296	1.5e-54	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30825
fragaria_vesca	FvH4_3g13510 FvH4_3g13510
malus_domestica	MD10G1221300.v1.1
prunus_persica	Prupe.4G123300_v2.0.a1 Prupe.4G123300_v2.0.a1
pyrus_communis	pycom10g18690
rosa_chinensis	RchiOBHm_Chr5g0022461 RchiOBHm_Chr6g0246611 RchiOBHm_Chr6g0255501
rosa_laevigata	RLG00000032661
rosa_multiflora	Rmu_sc0005639.1_g000004
rosa_roxburghii	Rroxscaffold_1G00056590
rosa_rugosa	Rorug05G0073700 Rorug05G0073800
rosa_samantha	Rh5AG160700
rosa_wichuraiana	Rw5G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
Acc36I	ACCTGC	1 cut(s)	223
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	5 cut(s)	74, 115, 146, 275, 701
AclWI	GGATC	4 cut(s)	259, 446, 762, 921
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	2 cut(s)	341, 607
AfiI	CCNNNNNNNGG	4 cut(s)	127, 221, 284, 936
AgsI	TTSAA	4 cut(s)	68, 304, 544, 934
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	9 cut(s)	82, 307, 350, 395, 421, 674, 686, 886, 956
AluI	AGCT	9 cut(s)	82, 307, 350, 395, 421, 674, 686, 886, 956
Alw21I	GWGCWC	2 cut(s)	397, 676
Alw26I	GTCTC	2 cut(s)	185, 648
AlwI	GGATC	4 cut(s)	259, 446, 762, 921
Ama87I	CYCGRG	1 cut(s)	279
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	2 cut(s)	96, 476
ApeKI	GCWGC	3 cut(s)	157, 172, 418
ApoI	RAATTY	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	142, 529
AvaI	CYCGRG	1 cut(s)	279
AxyI	CCTNAGG	2 cut(s)	480, 504
BanII	GRGCYC	2 cut(s)	397, 676
Bbv12I	GWGCWC	2 cut(s)	397, 676
BbvI	GCAGC	3 cut(s)	144, 159, 430
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	953
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	185, 648
BfaI	CTAG	1 cut(s)	957
BfmI	CTRYAG	1 cut(s)	581
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	3 cut(s)	158, 173, 419
BlpI	GCTNAGC	2 cut(s)	882, 941
BlsI	GCNGC	3 cut(s)	159, 174, 420
Bme1390I	CCNGG	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	962
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	6 cut(s)	168, 377, 481, 586, 828, 889
BoxI	GACNNNNGTC	1 cut(s)	524
Bpu1102I	GCTNAGC	2 cut(s)	882, 941
BpuEI	CTTGAG	3 cut(s)	7, 223, 932
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	522
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 221, 284, 936
Bse1I	ACTGG	1 cut(s)	756
Bse21I	CCTNAGG	2 cut(s)	480, 504
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	4 cut(s)	123, 601, 843, 904
BseLI	CCNNNNNNNGG	4 cut(s)	127, 221, 284, 936
BseMII	CTCAG	3 cut(s)	518, 932, 932
BseNI	ACTGG	1 cut(s)	756
BseXI	GCAGC	3 cut(s)	144, 159, 430
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	98, 478
BsiHKAI	GWGCWC	2 cut(s)	397, 676
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	4 cut(s)	127, 221, 284, 936
BsmAI	GTCTC	2 cut(s)	185, 648
BsnI	GGCC	2 cut(s)	98, 478
Bso31I	GGTCTC	1 cut(s)	648
BsoBI	CYCGRG	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	397, 676
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	251, 451, 754, 874, 926
Bsp1720I	GCTNAGC	2 cut(s)	882, 941
BspACI	CCGC	5 cut(s)	74, 115, 146, 275, 701
BspANI	GGCC	2 cut(s)	98, 478
BspCNI	CTCAG	3 cut(s)	517, 931, 933
BspEI	TCCGGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	962
BspMAI	CTGCAG	1 cut(s)	585
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	4 cut(s)	259, 446, 762, 921
BspTNI	GGTCTC	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	756
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	5 cut(s)	251, 451, 754, 874, 926
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	4 cut(s)	196, 436, 523, 763
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	5 cut(s)	480, 504, 882, 918, 941
BstDSI	CCRYGG	1 cut(s)	522
BstEII	GGTNACC	1 cut(s)	517
BstF5I	GGATG	4 cut(s)	123, 601, 843, 904
BstKTI	GATC	5 cut(s)	254, 454, 757, 877, 929
BstMAI	GTCTC	2 cut(s)	185, 648
BstMBI	GATC	5 cut(s)	251, 451, 754, 874, 926
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 178
BstNI	CCWGG	1 cut(s)	128
BstPAI	GACNNNNGTC	1 cut(s)	524
BstPI	GGTNACC	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	581
BstV1I	GCAGC	3 cut(s)	144, 159, 430
BstX2I	RGATCY	1 cut(s)	926
BstYI	RGATCY	1 cut(s)	926
Bsu36I	CCTNAGG	2 cut(s)	480, 504
BsuRI	GGCC	2 cut(s)	98, 478
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	4 cut(s)	123, 601, 843, 904
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	340, 606
CviAII	CATG	4 cut(s)	734, 785, 803, 826
CviQI	GTAC	2 cut(s)	340, 606
DdeI	CTNAG	5 cut(s)	480, 504, 882, 918, 941
DpnI	GATC	5 cut(s)	253, 453, 756, 876, 928
DpnII	GATC	5 cut(s)	251, 451, 754, 874, 926
DraIII	CACNNNGTG	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Ecl136II	GAGCTC	2 cut(s)	395, 674
Eco24I	GRGCYC	2 cut(s)	397, 676
Eco31I	GGTCTC	1 cut(s)	648
Eco53kI	GAGCTC	2 cut(s)	395, 674
Eco57I	CTGAAG	1 cut(s)	434
Eco81I	CCTNAGG	2 cut(s)	480, 504
Eco88I	CYCGRG	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	517
EcoICRI	GAGCTC	2 cut(s)	395, 674
EcoO65I	GGTNACC	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	126
EcoT22I	ATGCAT	2 cut(s)	790, 831
EcoT38I	GRGCYC	2 cut(s)	397, 676
FaeI	CATG	4 cut(s)	737, 788, 806, 829
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FatI	CATG	4 cut(s)	733, 784, 802, 825
FauI	CCCGC	3 cut(s)	153, 282, 694
FauNDI	CATATG	1 cut(s)	790
Fnu4HI	GCNGC	3 cut(s)	158, 173, 419
FokI	GGATG	4 cut(s)	110, 608, 850, 911
FriOI	GRGCYC	2 cut(s)	397, 676
Fsp4HI	GCNGC	3 cut(s)	158, 173, 419
FspBI	CTAG	1 cut(s)	957
GluI	GCNGC	3 cut(s)	158, 173, 419
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	98, 478
HapII	CCGG	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	737, 788, 806, 829
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	7 cut(s)	27, 265, 485, 540, 548, 822, 854
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	2 cut(s)	142, 529
Hpy188I	TCNGA	5 cut(s)	414, 648, 759, 817, 921
Hpy188III	TCNNGA	7 cut(s)	24, 188, 202, 269, 281, 677, 872
Hpy99I	CGWCG	2 cut(s)	846, 849
HpyAV	CCTTC	3 cut(s)	586, 734, 940
HpyCH4III	ACNGT	4 cut(s)	196, 436, 523, 763
HpyCH4IV	ACGT	2 cut(s)	111, 604
HpyCH4V	TGCA	9 cut(s)	262, 368, 472, 583, 599, 788, 829, 902, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 178
HpyF3I	CTNAG	5 cut(s)	480, 504, 882, 918, 941
HpySE526I	ACGT	2 cut(s)	111, 604
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	737, 788, 806, 829
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	251, 451, 754, 874, 926
LmnI	GCTCC	6 cut(s)	79, 392, 400, 631, 671, 679
Lsp1109I	GCAGC	3 cut(s)	144, 159, 430
LweI	GCATC	6 cut(s)	168, 377, 481, 586, 828, 889
MaeI	CTAG	1 cut(s)	957
MaeII	ACGT	2 cut(s)	111, 604
MaeIII	GTNAC	3 cut(s)	130, 517, 709
MalI	GATC	5 cut(s)	253, 453, 756, 876, 928
MboI	GATC	5 cut(s)	251, 451, 754, 874, 926
MboII	GAAGA	1 cut(s)	347
MflI	RGATCY	1 cut(s)	926
MhlI	GDGCHC	2 cut(s)	397, 676
MluCI	AATT	3 cut(s)	587, 907, 973
MlyI	GAGTC	3 cut(s)	494, 542, 863
MmeI	TCCRAC	1 cut(s)	671
Mph1103I	ATGCAT	2 cut(s)	790, 831
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	5 cut(s)	291, 618, 807, 972, 976
MslI	CAYNNNNRTG	2 cut(s)	128, 789
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	154, 178
NdeI	CATATG	1 cut(s)	790
NdeII	GATC	5 cut(s)	251, 451, 754, 874, 926
NlaIII	CATG	4 cut(s)	737, 788, 806, 829
NlaIV	GGNNCC	1 cut(s)	962
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	130, 517
NsiI	ATGCAT	2 cut(s)	790, 831
PacI	TTAATTAA	1 cut(s)	976
PaeR7I	CTCGAG	1 cut(s)	279
PfeI	GAWTC	4 cut(s)	27, 265, 540, 822
PkrI	GCNGC	3 cut(s)	159, 174, 420
PleI	GAGTC	3 cut(s)	493, 542, 862
PpsI	GAGTC	3 cut(s)	493, 542, 862
PshAI	GACNNNNGTC	1 cut(s)	524
Psp124BI	GAGCTC	2 cut(s)	397, 676
Psp6I	CCWGG	1 cut(s)	126
PspEI	GGTNACC	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	962
PspPI	GGNCC	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	585
PsuI	RGATCY	1 cut(s)	926
RsaI	GTAC	2 cut(s)	341, 607
RsaNI	GTAC	2 cut(s)	340, 606
RseI	CAYNNNNRTG	2 cut(s)	128, 789
SacI	GAGCTC	2 cut(s)	397, 676
SaqAI	TTAA	5 cut(s)	291, 618, 807, 972, 976
SatI	GCNGC	3 cut(s)	158, 173, 419
Sau3AI	GATC	5 cut(s)	251, 451, 754, 874, 926
Sau96I	GGNCC	1 cut(s)	96
SbfI	CCTGCAGG	1 cut(s)	585
SchI	GAGTC	3 cut(s)	494, 542, 863
ScrFI	CCNGG	1 cut(s)	128
SdaI	CCTGCAGG	1 cut(s)	585
SduI	GDGCHC	2 cut(s)	397, 676
SfaNI	GCATC	6 cut(s)	168, 377, 481, 586, 828, 889
SfcI	CTRYAG	1 cut(s)	581
Sfr274I	CTCGAG	1 cut(s)	279
SlaI	CTCGAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	128, 789
SmlI	CTYRAG	4 cut(s)	22, 202, 279, 947
SmoI	CTYRAG	4 cut(s)	22, 202, 279, 947
Sse8387I	CCTGCAGG	1 cut(s)	585
Sse9I	AATT	3 cut(s)	587, 907, 973
SsiI	CCGC	5 cut(s)	74, 115, 146, 275, 701
SspMI	CTAG	1 cut(s)	957
SstI	GAGCTC	2 cut(s)	397, 676
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	4 cut(s)	196, 436, 523, 763
TaiI	ACGT	2 cut(s)	114, 607
TaqI	TCGA	3 cut(s)	105, 280, 428
TasI	AATT	3 cut(s)	587, 907, 973
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	4 cut(s)	27, 265, 540, 822
Tru1I	TTAA	5 cut(s)	291, 618, 807, 972, 976
Tru9I	TTAA	5 cut(s)	291, 618, 807, 972, 976
TseFI	GTSAC	2 cut(s)	130, 517
TseI	GCWGC	3 cut(s)	157, 172, 418
Tsp45I	GTSAC	2 cut(s)	130, 517
TspDTI	ATGAA	4 cut(s)	152, 348, 696, 814
TspGWI	ACGGA	1 cut(s)	433
XapI	RAATTY	1 cut(s)	587
XhoI	CTCGAG	1 cut(s)	279
XspI	CTAG	1 cut(s)	957
ZraI	GACGTC	1 cut(s)	112
Zsp2I	ATGCAT	2 cut(s)	790, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.