pycom10g18690

Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
21965497 .. 21968977
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18690.4

Sequence Viewer

Length: 1233 bp
ATGTTTGACAGAATGTCCCATGGACATATGAAGCCAAGAGCAACTGCACAAAGTGGCATAACGATAAGAAGAGAGGGTGGGAATTTGGAATATAGGAAAGAATTAGGGTACCATTCCGGCATCCAAATTCCAAAAGGACCAAATACCAAAGACTTTGACGCTGTTGGAACTGCAGACTCCCTGAGCGACACGCCATGTCAAATTCTCAAAGGCCACAGACGTCACAAAAACCCTCAAATCTTCAAACCCAATTCAGTCCCAATGATTCTGTTGCAGTCCCACTCAAGATTTCTCCTCGACACCTTGCTCAATCGCCTCCAAAACATCGAGAAGGCGGTGGAGGCGGACTACCACTGGGCCGAGTTCGACGACGTTCGTTACCACATTCAGGTGACGATGAAGAACCCACATATATTGTTGCTTTCGGTATCGCTACCGACTCCGCCTCCGGAAACTGTGTTCGTGGGCGGCCTTCCCTCCGGAGCTATAGAGGCTATAAAGGCTGCATACGGCTCGGTGGTTCAAATTCTTGACCCTCCAAGAGATGGGTTTAATCTTACCTTGAAGCTCAATCTCAACAAACTTCCTCCAGATGAAGAGTACAGACATGCTCTTTTGCTAAAGATTGCATCTGTAAGAGAAGTGGTGCTAGGCGCTCCATTGCGAGGGGTTCTGAAGAAGCTTGGTGCAAGGAATGTTGCGTCCAATACTGATGGGCTTGTCGCTCTTTTGCATCGACCAAACGAGTCCTTTTTCCTTATTCCTCAGGTAGACAAAGTCACTGTAGTGTTCCCGATGAGATTCAAGGACTCTATAGATATTGTTCTTGCAACTTCCTTCTTGCAGGAATTTGTGGAAGCAAGACGTGCTGCTGGACTTAATAGCGCCCCTCCTTGTTTGTGGTCTCCTACCCCTCCTTTAGAACTAAAGGAAGCTCCCACTGAAGCACTGTCTGCCAATGCAGGATTTGTCACTTTTGTTATTTTCCCTCGTCACGTGGAAGGCAAGAAATTGGATCGAACAGTTTGGAGTTTATCAACTTTTCATGCTTATGTTAGTTACCATGTTAAGTGTTCAGAGGGTTTCATGCATACAAGGATGAGACGTCGCGTGGAATCTTTGATTGAGGCTCTTGATCGTGCTAAACCCGGCATGGAAGATGGAAAGAACGCTGCTCAAAGTAGATCCTTCAAACGGCTGAGCCTGAAGGAAGCCGGGACCAACTCAAGCTAA

Protein Analysis

411

Amino Acids

45.69

Weight (kDa)

9.48

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014558)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 223, 1108
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AccB7I CCANNNNNTGG 1 cut(s) 545
AccI GTMKAC 1 cut(s) 771
AccII CGCG 1 cut(s) 1110
AccIII TCCGGA 2 cut(s) 448, 479
AciI CCGC 4 cut(s) 335, 344, 443, 468
AclWI GGATC 2 cut(s) 1023, 1179
AcsI RAATTY 5 cut(s) 82, 126, 201, 525, 848
AcuI CTGAAG 3 cut(s) 695, 963, 1226
AcvI CACGTG 1 cut(s) 997
AcyI GRCGYC 2 cut(s) 220, 1105
AdeI CACNNNGTG 1 cut(s) 53
AfaI GTAC 2 cut(s) 110, 602
AfiI CCNNNNNNNGG 4 cut(s) 388, 545, 665, 1194
AgsI TTSAA 5 cut(s) 244, 524, 565, 805, 1192
AhdI GACNNNNNGTC 1 cut(s) 13
AjiI CACGTC 1 cut(s) 866
AleI CACNNNNGTG 1 cut(s) 785
AloI GAACNNNNNNTCC 2 cut(s) 443, 475
AluBI AGCT 5 cut(s) 485, 568, 682, 935, 1230
AluI AGCT 5 cut(s) 485, 568, 682, 935, 1230
Alw26I GTCTC 2 cut(s) 909, 1096
AlwI GGATC 2 cut(s) 1023, 1179
Aor13HI TCCGGA 2 cut(s) 448, 479
AoxI GGCC 3 cut(s) 211, 357, 469
ApeKI GCWGC 3 cut(s) 503, 869, 1172
ApoI RAATTY 5 cut(s) 82, 126, 201, 525, 848
Asp718I GGTACC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 656, 887
AspS9I GGNCC 3 cut(s) 137, 357, 1218
AsuC2I CCSGG 2 cut(s) 1149, 1216
AsuHPI GGTGA 1 cut(s) 403
AvaII GGWCC 2 cut(s) 137, 1218
AxyI CCTNAGG 1 cut(s) 765
BanI GGYRCC 1 cut(s) 108
BbrPI CACGTG 1 cut(s) 997
BbvI GCAGC 3 cut(s) 490, 856, 1159
BccI CCATC 3 cut(s) 539, 707, 1154
BceAI ACGGC 2 cut(s) 526, 1211
BcgI CGANNNNNNTGC 2 cut(s) 495, 529
BcnI CCSGG 2 cut(s) 1149, 1216
BcoDI GTCTC 2 cut(s) 909, 1096
BfaI CTAG 1 cut(s) 650
BfmI CTRYAG 4 cut(s) 171, 486, 783, 813
BfoI RGCGCY 2 cut(s) 657, 888
BisI GCNGC 4 cut(s) 469, 504, 870, 1173
BlpI GCTNAGC 1 cut(s) 1199
BlsI GCNGC 4 cut(s) 470, 505, 871, 1174
Bme1390I CCNGG 2 cut(s) 1149, 1216
Bme18I GGWCC 2 cut(s) 137, 1218
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgBI CACGTC 1 cut(s) 866
BmgT120I GGNCC 3 cut(s) 137, 357, 1218
BmiI GGNNCC 2 cut(s) 110, 1219
BmrFI CCNGG 2 cut(s) 1149, 1216
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 3 cut(s) 129, 638, 742
BmuI ACTGGG 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 182
Bpu1102I GCTNAGC 1 cut(s) 1199
BpuEI CTTGAG 2 cut(s) 268, 1210
BpuMI CCSGG 2 cut(s) 1149, 1216
BsaAI YACGTR 1 cut(s) 997
BsaHI GRCGYC 2 cut(s) 220, 1105
BsaI GGTCTC 1 cut(s) 909
BsaJI CCNNGG 1 cut(s) 19
BsaWI WCCGGW 2 cut(s) 448, 479
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 4 cut(s) 388, 545, 665, 1194
Bse1I ACTGG 1 cut(s) 359
Bse21I CCTNAGG 1 cut(s) 765
Bse3DI GCAATG 1 cut(s) 659
BseAI TCCGGA 2 cut(s) 448, 479
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 2 cut(s) 120, 1104
BseLI CCNNNNNNNGG 4 cut(s) 388, 545, 665, 1194
BseMI GCAATG 1 cut(s) 659
BseMII CTCAG 3 cut(s) 173, 779, 1190
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 3 cut(s) 490, 856, 1159
BsgI GTGCAG 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 1110
BshFI GGCC 3 cut(s) 213, 359, 471
BshNI GGYRCC 1 cut(s) 108
BsiSI CCGG 5 cut(s) 117, 449, 480, 1149, 1215
BslFI GGGAC 2 cut(s) 242, 262
BslI CCNNNNNNNGG 4 cut(s) 388, 545, 665, 1194
BsmAI GTCTC 2 cut(s) 909, 1096
BsmBI CGTCTC 1 cut(s) 1096
BsmFI GGGAC 2 cut(s) 242, 262
BsnI GGCC 3 cut(s) 213, 359, 471
Bso31I GGTCTC 1 cut(s) 909
Bsp13I TCCGGA 2 cut(s) 448, 479
Bsp143I GATC 3 cut(s) 1015, 1135, 1184
Bsp1720I GCTNAGC 1 cut(s) 1199
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 4 cut(s) 335, 344, 443, 468
BspANI GGCC 3 cut(s) 213, 359, 471
BspCNI CTCAG 3 cut(s) 174, 778, 1191
BspEI TCCGGA 2 cut(s) 448, 479
BspFNI CGCG 1 cut(s) 1110
BspLI GGNNCC 2 cut(s) 110, 1219
BspMAI CTGCAG 1 cut(s) 175
BspPI GGATC 2 cut(s) 1023, 1179
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 909
BsrDI GCAATG 1 cut(s) 659
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 3 cut(s) 1015, 1135, 1184
BssNI GRCGYC 2 cut(s) 220, 1105
BssT1I CCWWGG 1 cut(s) 19
Bst4CI ACNGT 4 cut(s) 457, 784, 951, 1024
Bst6I CTCTTC 2 cut(s) 64, 591
BstACI GRCGYC 2 cut(s) 220, 1105
BstAPI GCANNNNNTGC 2 cut(s) 866, 953
BstBAI YACGTR 1 cut(s) 997
BstDEI CTNAG 3 cut(s) 182, 765, 1199
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 2 cut(s) 120, 1104
BstFNI CGCG 1 cut(s) 1110
BstH2I RGCGCY 2 cut(s) 657, 888
BstHHI GCGC 2 cut(s) 656, 887
BstKTI GATC 3 cut(s) 1018, 1138, 1187
BstMAI GTCTC 2 cut(s) 909, 1096
BstMBI GATC 3 cut(s) 1015, 1135, 1184
BstMWI GCNNNNNNNGC 5 cut(s) 341, 491, 500, 866, 953
BstNSI RCATGY 1 cut(s) 611
BstSCI CCNGG 2 cut(s) 1147, 1214
BstSFI CTRYAG 4 cut(s) 171, 486, 783, 813
BstUI CGCG 1 cut(s) 1110
BstV1I GCAGC 3 cut(s) 490, 856, 1159
BstX2I RGATCY 1 cut(s) 1184
BstYI RGATCY 1 cut(s) 1184
Bsu36I CCTNAGG 1 cut(s) 765
BsuRI GGCC 3 cut(s) 213, 359, 471
BtgI CCRYGG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 866
BtsCI GGATG 2 cut(s) 120, 1104
BtsIMutI CAGTG 4 cut(s) 352, 780, 939, 947
CfoI GCGC 2 cut(s) 656, 887
Cfr13I GGNCC 3 cut(s) 137, 357, 1218
CseI GACGC 2 cut(s) 167, 690
Csp6I GTAC 2 cut(s) 109, 601
CspCI CAANNNNNGTGG 2 cut(s) 396, 431
CviAII CATG 7 cut(s) 20, 195, 608, 1046, 1064, 1087, 1153
CviQI GTAC 2 cut(s) 109, 601
DdeI CTNAG 3 cut(s) 182, 765, 1199
DpnI GATC 3 cut(s) 1017, 1137, 1186
DpnII GATC 3 cut(s) 1015, 1135, 1184
DraIII CACNNNGTG 1 cut(s) 53
DriI GACNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 2 cut(s) 64, 591
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 2 cut(s) 64, 591
EciI GGCGGA 2 cut(s) 359, 432
Eco130I CCWWGG 1 cut(s) 19
Eco31I GGTCTC 1 cut(s) 909
Eco47I GGWCC 2 cut(s) 137, 1218
Eco57I CTGAAG 3 cut(s) 695, 963, 1226
Eco72I CACGTG 1 cut(s) 997
Eco81I CCTNAGG 1 cut(s) 765
EcoT14I CCWWGG 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 1092
ErhI CCWWGG 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 1096
FaeI CATG 7 cut(s) 23, 198, 611, 1049, 1067, 1090, 1156
FaqI GGGAC 2 cut(s) 242, 262
FatI CATG 7 cut(s) 19, 194, 607, 1045, 1063, 1086, 1152
FauNDI CATATG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 4 cut(s) 469, 504, 870, 1173
FokI GGATG 2 cut(s) 107, 1111
Fsp4HI GCNGC 4 cut(s) 469, 504, 870, 1173
FspBI CTAG 1 cut(s) 650
GlaI GCGC 2 cut(s) 655, 886
GluI GCNGC 4 cut(s) 469, 504, 870, 1173
GsuI CTGGAG 1 cut(s) 573
HaeII RGCGCY 2 cut(s) 657, 888
HaeIII GGCC 3 cut(s) 213, 359, 471
HapII CCGG 5 cut(s) 117, 449, 480, 1149, 1215
HgaI GACGC 2 cut(s) 167, 690
HhaI GCGC 2 cut(s) 656, 887
Hin1I GRCGYC 2 cut(s) 220, 1105
Hin1II CATG 7 cut(s) 23, 198, 611, 1049, 1067, 1090, 1156
Hin6I GCGC 2 cut(s) 654, 885
HinP1I GCGC 2 cut(s) 654, 885
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 7 cut(s) 176, 265, 439, 746, 801, 809, 1115
HpaII CCGG 5 cut(s) 117, 449, 480, 1149, 1215
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 772
Hpy188I TCNGA 2 cut(s) 675, 1078
Hpy188III TCNNGA 8 cut(s) 285, 328, 449, 480, 530, 590, 793, 1133
Hpy8I GTNNAC 1 cut(s) 772
Hpy99I CGWCG 3 cut(s) 371, 374, 1110
HpyAV CCTTC 6 cut(s) 325, 482, 847, 995, 1198, 1201
HpyCH4III ACNGT 4 cut(s) 457, 784, 951, 1024
HpyCH4IV ACGT 5 cut(s) 220, 372, 865, 996, 1105
HpyF10VI GCNNNNNNNGC 5 cut(s) 341, 491, 500, 866, 953
HpyF3I CTNAG 3 cut(s) 182, 765, 1199
HpySE526I ACGT 5 cut(s) 220, 372, 865, 996, 1105
Hsp92I GRCGYC 2 cut(s) 220, 1105
Hsp92II CATG 7 cut(s) 23, 198, 611, 1049, 1067, 1090, 1156
HspAI GCGC 2 cut(s) 654, 885
Kpn2I TCCGGA 2 cut(s) 448, 479
KpnI GGTACC 1 cut(s) 112
Kzo9I GATC 3 cut(s) 1015, 1135, 1184
LmnI GCTCC 3 cut(s) 482, 661, 940
Lsp1109I GCAGC 3 cut(s) 490, 856, 1159
LweI GCATC 3 cut(s) 129, 638, 742
MaeI CTAG 1 cut(s) 650
MaeII ACGT 5 cut(s) 220, 372, 865, 996, 1105
MaeIII GTNAC 7 cut(s) 221, 377, 391, 778, 970, 992, 1058
MalI GATC 3 cut(s) 1017, 1137, 1186
MboI GATC 3 cut(s) 1015, 1135, 1184
MboII GAAGA 6 cut(s) 81, 232, 412, 608, 688, 1169
MflI RGATCY 1 cut(s) 1184
MluCI AATT 8 cut(s) 82, 101, 126, 201, 250, 525, 848, 1010
MlyI GAGTC 4 cut(s) 170, 433, 755, 803
MmeI TCCRAC 1 cut(s) 145
Mph1103I ATGCAT 1 cut(s) 1092
MroI TCCGGA 2 cut(s) 448, 479
MseI TTAA 3 cut(s) 552, 879, 1068
MslI CAYNNNNRTG 3 cut(s) 389, 785, 1050
MspI CCGG 5 cut(s) 117, 449, 480, 1149, 1215
MspR9I CCNGG 2 cut(s) 1149, 1216
MvnI CGCG 1 cut(s) 1110
MwoI GCNNNNNNNGC 5 cut(s) 341, 491, 500, 866, 953
NciI CCSGG 2 cut(s) 1149, 1216
NcoI CCATGG 1 cut(s) 19
NdeI CATATG 1 cut(s) 27
NdeII GATC 3 cut(s) 1015, 1135, 1184
NlaIII CATG 7 cut(s) 23, 198, 611, 1049, 1067, 1090, 1156
NlaIV GGNNCC 2 cut(s) 110, 1219
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 5 cut(s) 221, 391, 778, 970, 992
NsiI ATGCAT 1 cut(s) 1092
NspI RCATGY 1 cut(s) 611
OliI CACNNNNGTG 1 cut(s) 785
PfeI GAWTC 3 cut(s) 265, 801, 1115
PflFI GACNNNGTC 1 cut(s) 776
PflMI CCANNNNNTGG 1 cut(s) 545
PkrI GCNGC 4 cut(s) 470, 505, 871, 1174
PleI GAGTC 4 cut(s) 170, 433, 754, 803
PmaCI CACGTG 1 cut(s) 997
PmlI CACGTG 1 cut(s) 997
PpsI GAGTC 4 cut(s) 170, 433, 754, 803
Ppu21I YACGTR 1 cut(s) 997
PspCI CACGTG 1 cut(s) 997
PspN4I GGNNCC 2 cut(s) 110, 1219
PspPI GGNCC 3 cut(s) 137, 357, 1218
PstI CTGCAG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 1184
PsyI GACNNNGTC 1 cut(s) 776
RsaI GTAC 2 cut(s) 110, 602
RsaNI GTAC 2 cut(s) 109, 601
RseI CAYNNNNRTG 3 cut(s) 389, 785, 1050
SaqAI TTAA 3 cut(s) 552, 879, 1068
SatI GCNGC 4 cut(s) 469, 504, 870, 1173
Sau3AI GATC 3 cut(s) 1015, 1135, 1184
Sau96I GGNCC 3 cut(s) 137, 357, 1218
SchI GAGTC 4 cut(s) 170, 433, 755, 803
ScrFI CCNGG 2 cut(s) 1149, 1216
SfaNI GCATC 3 cut(s) 129, 638, 742
SfcI CTRYAG 4 cut(s) 171, 486, 783, 813
SinI GGWCC 2 cut(s) 137, 1218
SmiMI CAYNNNNRTG 3 cut(s) 389, 785, 1050
SmlI CTYRAG 2 cut(s) 283, 1225
SmoI CTYRAG 2 cut(s) 283, 1225
Sse9I AATT 8 cut(s) 82, 101, 126, 201, 250, 525, 848, 1010
SsiI CCGC 4 cut(s) 335, 344, 443, 468
SspMI CTAG 1 cut(s) 650
StyD4I CCNGG 2 cut(s) 1147, 1214
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 4 cut(s) 457, 784, 951, 1024
TaiI ACGT 5 cut(s) 223, 375, 868, 999, 1108
TaqI TCGA 5 cut(s) 297, 327, 366, 736, 1018
TasI AATT 8 cut(s) 82, 101, 126, 201, 250, 525, 848, 1010
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 471
TfiI GAWTC 3 cut(s) 265, 801, 1115
Tru1I TTAA 3 cut(s) 552, 879, 1068
Tru9I TTAA 3 cut(s) 552, 879, 1068
TscAI CASTG 4 cut(s) 359, 787, 946, 954
TseFI GTSAC 5 cut(s) 221, 391, 778, 970, 992
TseI GCWGC 3 cut(s) 503, 869, 1172
Tsp45I GTSAC 5 cut(s) 221, 391, 778, 970, 992
TspDTI ATGAA 5 cut(s) 44, 413, 609, 1034, 1075
TspRI CASTG 4 cut(s) 359, 787, 946, 954
Tth111I GACNNNGTC 1 cut(s) 776
Van91I CCANNNNNTGG 1 cut(s) 545
VpaK11BI GGWCC 2 cut(s) 137, 1218
XapI RAATTY 5 cut(s) 82, 126, 201, 525, 848
XceI RCATGY 1 cut(s) 611
XmiI GTMKAC 1 cut(s) 771
XspI CTAG 1 cut(s) 650
ZraI GACGTC 2 cut(s) 221, 1106
Zsp2I ATGCAT 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.