AT1G30890

Integral membrane HRF1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009482
Physical Location & Seq
Forward (+)
10994243 .. 10996223
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30890.2

Sequence Viewer

Length: 810 bp
ATGTATAATAACATGGGACCTCAACCGGGGATGCCAAGACCTCCAGGAAACCCTGAGCCTGGTCCATTTGGTAATCCTTTCACTGGAGCTGGCTCGGGTTTTATCCGTGGTGGTTTGGGAGCGTATGGGGAGAGAATTTTAGGATCGAGCTCTGAGTATGTTCAGAGCAATATAAGCCGGTACTTCTCTGATCCGCAATACTATTTCCAAGTGAATGATCAATATGTGAGGAATAAACTGAAGGTTGTTCTGTTTCCTTTCCTACACCGGGGACACTGGACCAGAATATCTGAACCAGTTGGTGGTAGGCTCTCATACAAGCCTCCAATATATGATATCAATGCTCCAGACTTGTACATTCCCTTTATGGCATTTGGTACCTACGTTGTTCTTGCTGGTCTTTCATTGGGACTTAATGGAAAGTTTACACCGGAAGCTTTGAATTGGCTGTTTGTGAAAGGATTGGTTGGTTGGTTTTTGCAAGTAATGCTCCTGAAAGTAACACTTCTATCACTTGGTAGTGGAGAGGCACCATTACTAGATATTGTGGCATACGGAGGGTATGCTTTTGCTGGTCTGTGTCTTGCGGGCTTTGCCAAAATAATGTGGGGATACTCGTACTACGCGTTGATGCCATGGACTTGTCTATGCACTGGGATTTTCTTGGTGAAGACGATGAAACGTGTTCTGTTTGCTGAAGTAAGAAGTTACGATTCGAGCAAACATCACTACCTTCTTCTGTTTTTAGCCTTGGTCCAGTTCCCACTTTTGATATGGCTTGGTAACATTAGTGTTAATTGGCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YIF1

Protein Analysis

269

Amino Acids

30.03

Weight (kDa)

9.23

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YIF1 PF03878 41 - 260 3.7e-56 YIF1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 2 cut(s) 377, 529
AccB7I CCANNNNNTGG 1 cut(s) 302
AccII CGCG 1 cut(s) 626
AciI CCGC 2 cut(s) 194, 587
AclWI GGATC 2 cut(s) 151, 185
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 260, 717
AfaI GTAC 4 cut(s) 182, 356, 379, 620
AfiI CCNNNNNNNGG 5 cut(s) 26, 59, 83, 268, 302
AflIII ACRYGT 2 cut(s) 624, 682
AgsI TTSAA 1 cut(s) 442
AjnI CCWGG 2 cut(s) 43, 58
AluBI AGCT 3 cut(s) 89, 150, 437
AluI AGCT 3 cut(s) 89, 150, 437
Alw21I GWGCWC 1 cut(s) 152
AlwI GGATC 2 cut(s) 151, 185
Ama87I CYCGRG 1 cut(s) 94
ApoI RAATTY 1 cut(s) 135
Asp718I GGTACC 1 cut(s) 377
AspS9I GGNCC 4 cut(s) 17, 62, 279, 754
AsuC2I CCSGG 2 cut(s) 27, 269
AsuHPI GGTGA 1 cut(s) 679
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 4 cut(s) 17, 62, 279, 754
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BanI GGYRCC 2 cut(s) 377, 529
BanII GRGCYC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 677
Bbv12I GWGCWC 1 cut(s) 152
BciT130I CCWGG 2 cut(s) 45, 60
BciVI GTATCC 1 cut(s) 605
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 2 cut(s) 27, 269
BfaI CTAG 1 cut(s) 539
BfuI GTATCC 1 cut(s) 605
Bme1390I CCNGG 4 cut(s) 27, 45, 60, 269
Bme18I GGWCC 4 cut(s) 17, 62, 279, 754
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 4 cut(s) 17, 62, 279, 754
BmiI GGNNCC 3 cut(s) 18, 379, 531
BmrFI CCNGG 4 cut(s) 27, 45, 60, 269
BmrI ACTGGG 1 cut(s) 663
BmsI GCATC 2 cut(s) 21, 621
BmuI ACTGGG 1 cut(s) 663
BpiI GAAGAC 1 cut(s) 677
BpmI CTGGAG 3 cut(s) 27, 105, 330
Bpu10I CCTNAGC 1 cut(s) 54
BpuMI CCSGG 2 cut(s) 27, 269
BsaJI CCNNGG 5 cut(s) 26, 106, 268, 635, 750
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 59, 83, 268, 302
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 5 cut(s) 88, 281, 296, 658, 757
BseBI CCWGG 2 cut(s) 45, 60
BseDI CCNNGG 5 cut(s) 26, 106, 268, 635, 750
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 5 cut(s) 26, 59, 83, 268, 302
BseMII CTCAG 2 cut(s) 45, 144
BseNI ACTGG 5 cut(s) 88, 281, 296, 658, 757
Bsh1236I CGCG 1 cut(s) 626
BshNI GGYRCC 2 cut(s) 377, 529
BsiHKAI GWGCWC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 4 cut(s) 26, 178, 268, 431
BslFI GGGAC 3 cut(s) 30, 285, 423
BslI CCNNNNNNNGG 5 cut(s) 26, 59, 83, 268, 302
BsmFI GGGAC 3 cut(s) 30, 285, 423
BsoBI CYCGRG 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 152
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 3 cut(s) 143, 190, 217
Bsp19I CCATGG 1 cut(s) 635
BspACI CCGC 2 cut(s) 194, 587
BspCNI CTCAG 2 cut(s) 46, 145
BspFNI CGCG 1 cut(s) 626
BspLI GGNNCC 3 cut(s) 18, 379, 531
BspPI GGATC 2 cut(s) 151, 185
BspT107I GGYRCC 2 cut(s) 377, 529
BsrFI RCCGGY 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 5 cut(s) 88, 281, 296, 658, 757
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 5 cut(s) 26, 106, 268, 635, 750
BssMI GATC 3 cut(s) 143, 190, 217
BssT1I CCWWGG 2 cut(s) 635, 750
Bst2UI CCWGG 2 cut(s) 45, 60
BstAPI GCANNNNNTGC 1 cut(s) 487
BstAUI TGTACA 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 91, 589
BstDEI CTNAG 2 cut(s) 54, 153
BstDSI CCRYGG 2 cut(s) 106, 635
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 1 cut(s) 626
BstKTI GATC 3 cut(s) 146, 193, 220
BstMBI GATC 3 cut(s) 143, 190, 217
BstMWI GCNNNNNNNGC 3 cut(s) 174, 487, 593
BstNI CCWGG 2 cut(s) 45, 60
BstSCI CCNGG 4 cut(s) 25, 43, 58, 267
BstUI CGCG 1 cut(s) 626
BstV2I GAAGAC 1 cut(s) 677
BsuI GTATCC 1 cut(s) 605
BtgI CCRYGG 2 cut(s) 106, 635
BtsCI GGATG 1 cut(s) 36
BtsIMutI CAGTG 3 cut(s) 81, 274, 651
Cac8I GCNNGC 2 cut(s) 91, 589
Cfr10I RCCGGY 1 cut(s) 177
Cfr13I GGNCC 4 cut(s) 17, 62, 279, 754
Csp6I GTAC 4 cut(s) 181, 355, 378, 619
CviAII CATG 2 cut(s) 13, 636
CviQI GTAC 4 cut(s) 181, 355, 378, 619
DdeI CTNAG 2 cut(s) 54, 153
DpnI GATC 3 cut(s) 145, 192, 219
DpnII GATC 3 cut(s) 143, 190, 217
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 635, 750
Eco24I GRGCYC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 4 cut(s) 17, 62, 279, 754
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 2 cut(s) 260, 717
Eco88I CYCGRG 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 43, 58
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 635, 750
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 2 cut(s) 635, 750
FaeI CATG 2 cut(s) 16, 639
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 3 cut(s) 30, 285, 423
FatI CATG 2 cut(s) 12, 635
FauI CCCGC 1 cut(s) 580
FbaI TGATCA 1 cut(s) 217
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 152
FspBI CTAG 1 cut(s) 539
GsuI CTGGAG 3 cut(s) 27, 105, 330
HapII CCGG 4 cut(s) 26, 178, 268, 431
Hin1II CATG 2 cut(s) 16, 639
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 1 cut(s) 713
HpaII CCGG 4 cut(s) 26, 178, 268, 431
HphI GGTGA 1 cut(s) 679
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 4 cut(s) 154, 165, 190, 292
Hpy188III TCNNGA 2 cut(s) 347, 493
Hpy8I GTNNAC 1 cut(s) 426
HpyAV CCTTC 2 cut(s) 235, 743
HpyCH4IV ACGT 2 cut(s) 384, 682
HpyCH4V TGCA 2 cut(s) 481, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 487, 593
HpyF3I CTNAG 2 cut(s) 54, 153
HpySE526I ACGT 2 cut(s) 384, 682
Hsp92II CATG 2 cut(s) 16, 639
KpnI GGTACC 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 3 cut(s) 143, 190, 217
LmnI GCTCC 4 cut(s) 86, 119, 349, 495
LweI GCATC 2 cut(s) 21, 621
MaeI CTAG 1 cut(s) 539
MaeII ACGT 2 cut(s) 384, 682
MaeIII GTNAC 3 cut(s) 499, 707, 782
MalI GATC 3 cut(s) 145, 192, 219
MboI GATC 3 cut(s) 143, 190, 217
MboII GAAGA 2 cut(s) 682, 728
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 3 cut(s) 135, 442, 796
MluI ACGCGT 1 cut(s) 624
MnlI CCTC 6 cut(s) 30, 51, 222, 333, 520, 551
MseI TTAA 2 cut(s) 414, 795
MspI CCGG 4 cut(s) 26, 178, 268, 431
MspR9I CCNGG 4 cut(s) 27, 45, 60, 269
MvaI CCWGG 2 cut(s) 45, 60
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 3 cut(s) 174, 487, 593
NciI CCSGG 2 cut(s) 27, 269
NcoI CCATGG 1 cut(s) 635
NdeII GATC 3 cut(s) 143, 190, 217
NlaIII CATG 2 cut(s) 16, 639
NlaIV GGNNCC 3 cut(s) 18, 379, 531
PcsI WCGNNNNNNNCGW 1 cut(s) 623
PfeI GAWTC 1 cut(s) 713
PflMI CCANNNNNTGG 1 cut(s) 302
PfoI TCCNGGA 1 cut(s) 43
PpuMI RGGWCCY 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 43, 58
PspGI CCWGG 2 cut(s) 43, 58
PspN4I GGNNCC 3 cut(s) 18, 379, 531
PspPI GGNCC 4 cut(s) 17, 62, 279, 754
PspPPI RGGWCCY 1 cut(s) 17
RsaI GTAC 4 cut(s) 182, 356, 379, 620
RsaNI GTAC 4 cut(s) 181, 355, 378, 619
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 414, 795
Sau3AI GATC 3 cut(s) 143, 190, 217
Sau96I GGNCC 4 cut(s) 17, 62, 279, 754
ScrFI CCNGG 4 cut(s) 27, 45, 60, 269
SduI GDGCHC 1 cut(s) 152
SfaNI GCATC 2 cut(s) 21, 621
SinI GGWCC 4 cut(s) 17, 62, 279, 754
Sse9I AATT 3 cut(s) 135, 442, 796
SsiI CCGC 2 cut(s) 194, 587
SspMI CTAG 1 cut(s) 539
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 4 cut(s) 25, 43, 58, 267
StyI CCWWGG 2 cut(s) 635, 750
TaiI ACGT 2 cut(s) 387, 685
TaqI TCGA 2 cut(s) 146, 716
TasI AATT 3 cut(s) 135, 442, 796
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 2 cut(s) 414, 795
Tru9I TTAA 2 cut(s) 414, 795
TscAI CASTG 3 cut(s) 88, 281, 658
TspDTI ATGAA 2 cut(s) 393, 692
TspGWI ACGGA 2 cut(s) 95, 570
TspRI CASTG 3 cut(s) 88, 281, 658
Van91I CCANNNNNTGG 1 cut(s) 302
VpaK11BI GGWCC 4 cut(s) 17, 62, 279, 754
XapI RAATTY 1 cut(s) 135
XcmI CCANNNNNNNNNTGG 1 cut(s) 771
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.