Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009482

Physical Location & Seq

Genomic Coordinates Reverse (-)

17411165 .. 17414899

Gene Structure 3735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G156000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTACAATAACGTGGGAGCCCAGCCTGGAGTGCCAATACCGCCTGCAACTTCGCAGCCAAATCCGTTTGGAAATACGTTTTACGGTGCCGGTTCAGGACTTATCCGTGGTGGATTGGGCGCGTATGGAGAGAAAATTTTAGGATCAAGTTCTGAGTATGTACAAAGCAATATCAGTAGGTATTTCTCTGATCCTCAATACTACTTCCAAGTGAATGACCAGTATGTCCGGAACAAGTTGAAGGTTGTTCTATTTCCATTTCTTCACAGGGGCCATTGGACAAGAATAACTGAACCAGTAGGAGGCAGGCTTTCTTATAAACCCCCAATCTATGACATCAATGCACCAGACCTGTACATTCCATTTATGGCATTTGGTACCTATGTGGTACTGGCTGGCTTCTCATTGGGTCTTCAAGGAAAGTTTAGTCCTGAAGCTCTAAACTGGTTGTTTATCAAGGGATTGCTTGGCTGGTTTATGCAAGTTGCACTACTGAAAGTAACATTGCTTTCCTTGGGTGGTGGTGAGGCACCATTGCTGGACATGGTGGCATATGCTGGCTATGCTTTCACAGGGTTGTGCTTGGCCGTACTTGGACGGATTGTGTTGAGTTACTCATACTATTTTTTGATGCCTTGGACCTGTTTATGCATGGGAGTTTTCTTGGTGAAGACTATGAAAAGAGTCCTTTTTGCAGAGGTGAGGAGTTATGATTCAAGCAAGCATCATTATCTTTTGCTCTTTATCGCTTTGGCGCAGTTCCCTCTTTTTACATGGCTTGGCAACGTTAGTGTTAATTGGCTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YIF1

Protein Analysis

270

Amino Acids

30.03

Weight (kDa)

9.22

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30890 AT1G30890 AT3G59500 AT3G59500
fragaria_vesca	FvH4_4g10910
malus_domestica	MD09G1251200.v1.1 MD17G1243500.v1.1
prunus_persica	Prupe.3G156000_v2.0.a1 Prupe.3G156000_v2.0.a1
pyrus_communis	pycom09g16760 pycom17g24610
rosa_chinensis	RchiOBHm_Chr4g0406461
rosa_laevigata	RLG00000008769
rosa_multiflora	Rmu_ssc0000186.1_g000019
rosa_roxburghii	Rroxscaffold_5G00351340
rosa_rugosa	Rorug04G0071500 Rorug04G0071600
rosa_samantha	Rh4AG138500 Rh4BG135700 Rh4CG145900 Rh4DG133000
rosa_wichuraiana	Rw4G011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AasI	GACNNNNNNGTC	1 cut(s)	224
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	3 cut(s)	86, 377, 529
AccII	CGCG	1 cut(s)	122
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	1 cut(s)	41
AclI	AACGTT	1 cut(s)	786
AclWI	GGATC	2 cut(s)	151, 185
AcoI	YGGCCR	1 cut(s)	585
AcsI	RAATTY	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	6 cut(s)	5, 162, 356, 379, 390, 591
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	241, 416, 717
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
AlwI	GGATC	2 cut(s)	151, 185
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	2 cut(s)	271, 585
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	135
Asp718I	GGTACC	1 cut(s)	377
AspLEI	GCGC	2 cut(s)	122, 757
AspS9I	GGNCC	2 cut(s)	271, 639
AsuHPI	GGTGA	3 cut(s)	536, 679, 712
AvaII	GGWCC	1 cut(s)	639
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BanI	GGYRCC	3 cut(s)	86, 377, 529
BanII	GRGCYC	1 cut(s)	22
BbsI	GAAGAC	2 cut(s)	404, 677
BbvI	GCAGC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	572
BciT130I	CCWGG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	271, 639
BmiI	GGNNCC	5 cut(s)	19, 88, 272, 379, 531
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	621, 733
BpiI	GAAGAC	2 cut(s)	404, 677
BpmI	CTGGAG	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	106, 513, 635
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	4 cut(s)	220, 296, 396, 449
Bse3DI	GCAATG	2 cut(s)	503, 533
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	106, 513, 635
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	2 cut(s)	503, 533
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	4 cut(s)	220, 296, 396, 449
BseRI	GAGGAG	1 cut(s)	718
BseXI	GCAGC	1 cut(s)	67
BseYI	CCCAGC	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	273, 587
BshNI	GGYRCC	3 cut(s)	86, 377, 529
BsiSI	CCGG	2 cut(s)	90, 229
BslI	CCNNNNNNNGG	1 cut(s)	302
BsnI	GGCC	2 cut(s)	273, 587
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp13I	TCCGGA	1 cut(s)	228
Bsp1407I	TGTACA	3 cut(s)	3, 160, 354
Bsp143I	GATC	2 cut(s)	143, 190
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	2 cut(s)	273, 587
BspCNI	CTCAG	1 cut(s)	145
BspEI	TCCGGA	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	5 cut(s)	19, 88, 272, 379, 531
BspPI	GGATC	2 cut(s)	151, 185
BspT107I	GGYRCC	3 cut(s)	86, 377, 529
BsrDI	GCAATG	2 cut(s)	503, 533
BsrFI	RCCGGY	1 cut(s)	89
BsrGI	TGTACA	3 cut(s)	3, 160, 354
BsrI	ACTGG	4 cut(s)	220, 296, 396, 449
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	106, 513, 635
BssMI	GATC	2 cut(s)	143, 190
BssT1I	CCWWGG	2 cut(s)	513, 635
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	86
BstAUI	TGTACA	3 cut(s)	3, 160, 354
BstC8I	GCNNGC	5 cut(s)	45, 308, 397, 559, 722
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	122, 757
BstKTI	GATC	2 cut(s)	146, 193
BstMBI	GATC	2 cut(s)	143, 190
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 40, 563
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	2 cut(s)	404, 677
BsuRI	GGCC	2 cut(s)	273, 587
BtgI	CCRYGG	1 cut(s)	106
Cac8I	GCNNGC	5 cut(s)	45, 308, 397, 559, 722
CfoI	GCGC	2 cut(s)	122, 757
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	271, 639
Csp6I	GTAC	6 cut(s)	4, 161, 355, 378, 389, 590
CviAII	CATG	3 cut(s)	544, 652, 774
CviQI	GTAC	6 cut(s)	4, 161, 355, 378, 389, 590
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	145, 192
DpnII	GATC	2 cut(s)	143, 190
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	585
Eco130I	CCWWGG	2 cut(s)	513, 635
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	639
Eco57I	CTGAAG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	513, 635
EcoT22I	ATGCAT	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	513, 635
FaeI	CATG	3 cut(s)	547, 655, 777
FatI	CATG	3 cut(s)	543, 651, 773
FauNDI	CATATG	1 cut(s)	553
Fnu4HI	GCNGC	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	56
GlaI	GCGC	2 cut(s)	121, 756
GluI	GCNGC	1 cut(s)	56
GsaI	CCCAGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	273, 587
HapII	CCGG	2 cut(s)	90, 229
HhaI	GCGC	2 cut(s)	122, 757
Hin1II	CATG	3 cut(s)	547, 655, 777
Hin6I	GCGC	2 cut(s)	120, 755
HinP1I	GCGC	2 cut(s)	120, 755
HinfI	GANTC	2 cut(s)	684, 713
HpaII	CCGG	2 cut(s)	90, 229
HphI	GGTGA	3 cut(s)	536, 679, 712
Hpy188I	TCNGA	2 cut(s)	154, 190
Hpy188III	TCNNGA	3 cut(s)	96, 229, 431
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	3 cut(s)	12, 77, 786
HpyCH4V	TGCA	6 cut(s)	47, 344, 481, 488, 651, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 40, 563
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	3 cut(s)	12, 77, 786
Hsp92II	CATG	3 cut(s)	547, 655, 777
HspAI	GCGC	2 cut(s)	120, 755
Kpn2I	TCCGGA	1 cut(s)	228
KpnI	GGTACC	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	143, 190
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	2 cut(s)	621, 733
MaeII	ACGT	3 cut(s)	12, 77, 786
MaeIII	GTNAC	2 cut(s)	499, 611
MalI	GATC	2 cut(s)	145, 192
MboI	GATC	2 cut(s)	143, 190
MboII	GAAGA	3 cut(s)	254, 404, 682
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	2 cut(s)	135, 796
MlyI	GAGTC	1 cut(s)	693
MnlI	CCTC	6 cut(s)	204, 296, 520, 691, 696, 774
Mph1103I	ATGCAT	1 cut(s)	653
MroI	TCCGGA	1 cut(s)	228
MseI	TTAA	1 cut(s)	795
MspI	CCGG	2 cut(s)	90, 229
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	31, 40, 563
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	2 cut(s)	143, 190
NlaIII	CATG	3 cut(s)	547, 655, 777
NlaIV	GGNNCC	5 cut(s)	19, 88, 272, 379, 531
NsiI	ATGCAT	1 cut(s)	653
PfeI	GAWTC	1 cut(s)	713
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	692
PpsI	GAGTC	1 cut(s)	692
PsiI	TTATAA	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	786
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	5 cut(s)	19, 88, 272, 379, 531
PspPI	GGNCC	2 cut(s)	271, 639
RsaI	GTAC	6 cut(s)	5, 162, 356, 379, 390, 591
RsaNI	GTAC	6 cut(s)	4, 161, 355, 378, 389, 590
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	2 cut(s)	143, 190
Sau96I	GGNCC	2 cut(s)	271, 639
SchI	GAGTC	1 cut(s)	693
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	22
SfaNI	GCATC	2 cut(s)	621, 733
SinI	GGWCC	1 cut(s)	639
Sse9I	AATT	2 cut(s)	135, 796
SsiI	CCGC	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	2 cut(s)	513, 635
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	3 cut(s)	15, 80, 789
TasI	AATT	2 cut(s)	135, 796
TatI	WGTACW	3 cut(s)	3, 160, 354
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	692
TspGWI	ACGGA	3 cut(s)	54, 95, 613
VpaK11BI	GGWCC	1 cut(s)	639
XapI	RAATTY	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.