AT3G59500

Integral membrane HRF1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009482
Physical Location & Seq
Forward (+)
21986463 .. 21988326
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59500.1

Sequence Viewer

Length: 810 bp
ATGTATAATAATATGGGACCCCGGCCTGGAATGGCAATGCCTCAGGCAAATCCTCAGCCTAGCCCATTTGGGAATCCGTTCTCTGGACCTGGCTCTGGACTTATCCGGAGTGGCTTGGGAGCTTATGGGGAGAAGATTTTCGGTTCTAGCTCTGAGTATGTGCAGAGCAACATAAGTCGCTACTTCTCCGATCCTCAATACTATTTTCAAGTGAATGACCAGTATGTGAGGAACAAGTTGAAGATTGTTCTACTTCCATTCCTTCACAGGGGACACTGGACTCGAATATCAGAACCAGTTGGGGGTAGACTTTCATACAAACCACCGATATACGATATAAATGCACCAGACTTATACATTCCGCTTATGGCCTTTGGCACTTACGTTGTTCTTGCTGGTTTGTCACTAGGACTCTATGGAAAGTTTACTCCAGAAGCTCTGAACTGGCTTTTTGTGAAAGGAATGGTTGGCTGGTTTTTGCAAGTGATGCTGCTGAAGATAACATTGCTTTCACTTGGAAGCGGAGAAGCCCCTCTCTTGGATATTGTGGCATATGCAGGCTATACTTTCACAGGCCTTTGTCTAGCTGTTCTTGGCAAGATAATCTGGGGATACTCTTACTATGTTTTGATTCCGTGGACCTGCTTATGCACTGGGGTATTCTTAGTGAAGACAATGAAGCGAGTTCTCTTTGCAGAATCTAGGAGTTATGACTCAAGCAGGCATCACTATCTCTTGATCTTTGTTGCTTTAGCCCAGTTTCCTCTTTTGATCTGGCTTGGTAACATTAGTGTGAATTGGCTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YIF1

Protein Analysis

269

Amino Acids

30.17

Weight (kDa)

9.32

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YIF1 PF03878 41 - 260 5.9e-57 YIF1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 650
AccI GTMKAC 1 cut(s) 307
AccIII TCCGGA 1 cut(s) 105
AciI CCGC 2 cut(s) 362, 522
AclWI GGATC 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 515
AfiI CCNNNNNNNGG 6 cut(s) 26, 83, 95, 268, 302, 538
AgsI TTSAA 2 cut(s) 209, 241
AjnI CCWGG 2 cut(s) 25, 88
AluBI AGCT 4 cut(s) 122, 150, 437, 587
AluI AGCT 4 cut(s) 122, 150, 437, 587
AlwI GGATC 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 105
AoxI GGCC 3 cut(s) 23, 369, 574
ApeKI GCWGC 1 cut(s) 490
Asp700I GAANNNNTTC 2 cut(s) 77, 137
AspS9I GGNCC 3 cut(s) 17, 86, 639
AsuC2I CCSGG 1 cut(s) 22
AvaII GGWCC 3 cut(s) 17, 86, 639
AxyI CCTNAGG 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 677
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 477
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 2 cut(s) 27, 90
BciVI GTATCC 1 cut(s) 605
BcnI CCSGG 1 cut(s) 22
BfaI CTAG 5 cut(s) 60, 147, 407, 584, 702
BfuAI ACCTGC 1 cut(s) 650
BfuI GTATCC 1 cut(s) 605
BisI GCNGC 1 cut(s) 491
BlsI GCNGC 1 cut(s) 492
Bme1390I CCNGG 3 cut(s) 22, 27, 90
Bme18I GGWCC 3 cut(s) 17, 86, 639
BmgT120I GGNCC 3 cut(s) 17, 86, 639
BmiI GGNNCC 2 cut(s) 18, 19
BmrFI CCNGG 3 cut(s) 22, 27, 90
BmrI ACTGGG 2 cut(s) 663, 751
BmsI GCATC 2 cut(s) 477, 733
BmuI ACTGGG 2 cut(s) 663, 751
BpiI GAAGAC 1 cut(s) 677
BpmI CTGGAG 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 700
BpuMI CCSGG 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 20, 635
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 83, 95, 268, 302, 538
Bse1I ACTGG 6 cut(s) 220, 281, 296, 449, 658, 757
Bse21I CCTNAGG 1 cut(s) 42
Bse3DI GCAATG 2 cut(s) 42, 503
BseAI TCCGGA 1 cut(s) 105
BseBI CCWGG 2 cut(s) 27, 90
BseDI CCNNGG 2 cut(s) 20, 635
BseLI CCNNNNNNNGG 6 cut(s) 26, 83, 95, 268, 302, 538
BseMI GCAATG 2 cut(s) 42, 503
BseMII CTCAG 3 cut(s) 56, 68, 144
BseNI ACTGG 6 cut(s) 220, 281, 296, 449, 658, 757
BseXI GCAGC 1 cut(s) 477
BsgI GTGCAG 1 cut(s) 182
BshFI GGCC 3 cut(s) 25, 371, 576
BsiSI CCGG 2 cut(s) 22, 106
BslFI GGGAC 2 cut(s) 30, 285
BslI CCNNNNNNNGG 6 cut(s) 26, 83, 95, 268, 302, 538
BsmFI GGGAC 2 cut(s) 30, 285
BsnI GGCC 3 cut(s) 25, 371, 576
Bsp13I TCCGGA 1 cut(s) 105
Bsp143I GATC 3 cut(s) 190, 738, 771
BspACI CCGC 2 cut(s) 362, 522
BspANI GGCC 3 cut(s) 25, 371, 576
BspCNI CTCAG 3 cut(s) 55, 67, 145
BspEI TCCGGA 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 18, 19
BspMI ACCTGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 42, 503
BsrI ACTGG 6 cut(s) 220, 281, 296, 449, 658, 757
BssECI CCNNGG 2 cut(s) 20, 635
BssMI GATC 3 cut(s) 190, 738, 771
Bst2UI CCWGG 2 cut(s) 27, 90
BstAPI GCANNNNNTGC 1 cut(s) 487
BstC8I GCNNGC 2 cut(s) 559, 722
BstDEI CTNAG 4 cut(s) 42, 54, 153, 664
BstDSI CCRYGG 1 cut(s) 635
BstKTI GATC 3 cut(s) 193, 741, 774
BstMBI GATC 3 cut(s) 190, 738, 771
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNI CCWGG 2 cut(s) 27, 90
BstSCI CCNGG 3 cut(s) 20, 25, 88
BstV1I GCAGC 1 cut(s) 477
BstV2I GAAGAC 1 cut(s) 677
Bsu36I CCTNAGG 1 cut(s) 42
BsuI GTATCC 1 cut(s) 605
BsuRI GGCC 3 cut(s) 25, 371, 576
BtgI CCRYGG 1 cut(s) 635
BtsIMutI CAGTG 2 cut(s) 274, 651
BveI ACCTGC 1 cut(s) 650
Cac8I GCNNGC 2 cut(s) 559, 722
Cfr13I GGNCC 3 cut(s) 17, 86, 639
DdeI CTNAG 4 cut(s) 42, 54, 153, 664
DpnI GATC 3 cut(s) 192, 740, 773
DpnII GATC 3 cut(s) 190, 738, 771
Eco147I AGGCCT 1 cut(s) 576
Eco47I GGWCC 3 cut(s) 17, 86, 639
Eco57I CTGAAG 1 cut(s) 515
Eco81I CCTNAGG 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 25, 88
FaqI GGGAC 2 cut(s) 30, 285
FauNDI CATATG 1 cut(s) 553
FblI GTMKAC 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 491
Fsp4HI GCNGC 1 cut(s) 491
FspBI CTAG 5 cut(s) 60, 147, 407, 584, 702
GluI GCNGC 1 cut(s) 491
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 3 cut(s) 25, 371, 576
HapII CCGG 2 cut(s) 22, 106
HinfI GANTC 6 cut(s) 73, 280, 411, 631, 698, 713
HpaII CCGG 2 cut(s) 22, 106
Hpy166II GTNNAC 3 cut(s) 308, 426, 639
Hpy188I TCNGA 4 cut(s) 154, 190, 292, 441
Hpy188III TCNNGA 5 cut(s) 84, 96, 106, 431, 736
Hpy8I GTNNAC 3 cut(s) 308, 426, 639
HpyAV CCTTC 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 6 cut(s) 163, 344, 481, 557, 651, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpyF3I CTNAG 4 cut(s) 42, 54, 153, 664
HpySE526I ACGT 1 cut(s) 384
KflI GGGWCCC 1 cut(s) 17
Kpn2I TCCGGA 1 cut(s) 105
Kzo9I GATC 3 cut(s) 190, 738, 771
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 1 cut(s) 477
LweI GCATC 2 cut(s) 477, 733
MaeI CTAG 5 cut(s) 60, 147, 407, 584, 702
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 402, 782
MalI GATC 3 cut(s) 192, 740, 773
MboI GATC 3 cut(s) 190, 738, 771
MboII GAAGA 4 cut(s) 145, 253, 508, 682
MluCI AATT 1 cut(s) 796
MlyI GAGTC 3 cut(s) 274, 405, 707
MnlI CCTC 6 cut(s) 51, 63, 204, 222, 543, 774
MroI TCCGGA 1 cut(s) 105
MroXI GAANNNNTTC 2 cut(s) 77, 137
MslI CAYNNNNRTG 1 cut(s) 791
MspI CCGG 2 cut(s) 22, 106
MspR9I CCNGG 3 cut(s) 22, 27, 90
MvaI CCWGG 2 cut(s) 27, 90
MwoI GCNNNNNNNGC 1 cut(s) 487
NciI CCSGG 1 cut(s) 22
NdeI CATATG 1 cut(s) 553
NdeII GATC 3 cut(s) 190, 738, 771
NlaIV GGNNCC 2 cut(s) 18, 19
NmuCI GTSAC 1 cut(s) 402
PceI AGGCCT 1 cut(s) 576
PdmI GAANNNNTTC 2 cut(s) 77, 137
PfeI GAWTC 3 cut(s) 73, 631, 698
PkrI GCNGC 1 cut(s) 492
PleI GAGTC 3 cut(s) 274, 405, 707
PpsI GAGTC 3 cut(s) 274, 405, 707
PpuMI RGGWCCY 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 25, 88
PspGI CCWGG 2 cut(s) 25, 88
PspN4I GGNNCC 2 cut(s) 18, 19
PspPI GGNCC 3 cut(s) 17, 86, 639
PspPPI RGGWCCY 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 791
SatI GCNGC 1 cut(s) 491
Sau3AI GATC 3 cut(s) 190, 738, 771
Sau96I GGNCC 3 cut(s) 17, 86, 639
SchI GAGTC 3 cut(s) 274, 405, 707
ScrFI CCNGG 3 cut(s) 22, 27, 90
SetI ASST 7 cut(s) 91, 124, 152, 387, 439, 589, 644
SfaNI GCATC 2 cut(s) 477, 733
SinI GGWCC 3 cut(s) 17, 86, 639
SmiMI CAYNNNNRTG 1 cut(s) 791
SmlI CTYRAG 1 cut(s) 715
SmoI CTYRAG 1 cut(s) 715
Sse9I AATT 1 cut(s) 796
SseBI AGGCCT 1 cut(s) 576
SsiI CCGC 2 cut(s) 362, 522
SspMI CTAG 5 cut(s) 60, 147, 407, 584, 702
StuI AGGCCT 1 cut(s) 576
StyD4I CCNGG 3 cut(s) 20, 25, 88
TaiI ACGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 283
TasI AATT 1 cut(s) 796
TfiI GAWTC 3 cut(s) 73, 631, 698
TscAI CASTG 2 cut(s) 281, 658
TseFI GTSAC 1 cut(s) 402
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 2 cut(s) 303, 692
TspGWI ACGGA 2 cut(s) 66, 624
TspRI CASTG 2 cut(s) 281, 658
VpaK11BI GGWCC 3 cut(s) 17, 86, 639
XmiI GTMKAC 1 cut(s) 307
XmnI GAANNNNTTC 2 cut(s) 77, 137
XspI CTAG 5 cut(s) 60, 147, 407, 584, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.