Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009482

Physical Location & Seq

Genomic Coordinates Reverse (-)

17155389 .. 17158098

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16760.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTACAGTAATGTGGGAGGCCAGCCTGGGGCGGCAATGCCGACGGCATCCCCGCCGATGAATCCGTTTGGGAATTCGTTGTACGGTGCTAGTTCCGGATTAATCCGTGGTGGATTGGGTGCATATGGAGAGAAGATTTTAGGATCAAGCTCTGAGTATGTACAAAGCAATATCGGTCAAAACGGGATCGATCCGCAATACTACTTCCAAGTGAATGACCAGTATGTGAGGAACAAATTGAAGGTTGTTCTATTTCCTTTTCTCCACAGGGGTCATTGGACCAGAATAACGGAGCCAGTAGGAGGCAGGCTTTCTTATAAACCCCCAATCTATGACATAAATGCACCAGACCTATACATTCCATTTATGGCATTTGGTACCTATGTGGTTCTGGCTGGCTTCTCATTGGGTCTTCAAGGAAAGTTTAGCCCTGAAGCTCTAAACTGGTTGTTTATCAAGGGCTTGCTTGGCTGGTTTATACAAGTTGCACTACTGAAAGTATCATTGCTTTCATTGGGCGGTGGTGAGGCACCGTTGCTGGACATGGTGGCATATGCTGGGTATGCTTTCACGGGGTTGTGCTTTGCTGTACTTGGACGGATTATGTTGAGCTACTCATACTACTTTTTGATGCCTTGGACGTGTTTATGCATGGGAGTCTTCTTGGTGAAGACAATGAAGAGAGTTCTATTCGCCGAGGTGAGGAGTTATGATTCAAGCAAGCAGCATTACCTGTTGCTGTTTATTGCTTTGGCTCAGTTACCTCTGTTTACGTGGCTTGGCAACGTTACTGTTAATTGGCTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YIF1

Protein Analysis

270

Amino Acids

29.77

Weight (kDa)

9.12

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30890 AT1G30890 AT3G59500 AT3G59500
fragaria_vesca	FvH4_4g10910
malus_domestica	MD09G1251200.v1.1 MD17G1243500.v1.1
prunus_persica	Prupe.3G156000_v2.0.a1 Prupe.3G156000_v2.0.a1
pyrus_communis	pycom09g16760 pycom17g24610
rosa_chinensis	RchiOBHm_Chr4g0406461
rosa_laevigata	RLG00000008769
rosa_multiflora	Rmu_ssc0000186.1_g000019
rosa_roxburghii	Rroxscaffold_5G00351340
rosa_rugosa	Rorug04G0071500 Rorug04G0071600
rosa_samantha	Rh4AG138500 Rh4BG135700 Rh4CG145900 Rh4DG133000
rosa_wichuraiana	Rw4G011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	2 cut(s)	377, 529
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	4 cut(s)	32, 53, 194, 519
AclI	AACGTT	1 cut(s)	786
AclWI	GGATC	3 cut(s)	151, 185, 194
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	5 cut(s)	5, 83, 162, 379, 591
AfiI	CCNNNNNNNGG	3 cut(s)	28, 302, 702
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	3 cut(s)	241, 416, 717
AjiI	CACGTC	1 cut(s)	642
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	150, 437, 612
AluI	AGCT	3 cut(s)	150, 437, 612
AlwI	GGATC	3 cut(s)	151, 185, 194
Aor13HI	TCCGGA	1 cut(s)	95
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	724
ApoI	RAATTY	1 cut(s)	73
AseI	ATTAAT	1 cut(s)	101
Asp718I	GGTACC	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	536, 679, 712
AvaII	GGWCC	1 cut(s)	279
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BanI	GGYRCC	2 cut(s)	377, 529
BbsI	GAAGAC	3 cut(s)	404, 652, 677
BbvI	GCAGC	1 cut(s)	736
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	27
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	33, 725
BlsI	GCNGC	2 cut(s)	34, 726
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	279
BmgBI	CACGTC	1 cut(s)	642
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	3 cut(s)	294, 379, 531
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	56, 621
BpiI	GAAGAC	3 cut(s)	404, 652, 677
Bsa29I	ATCGAT	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	774
BsaJI	CCNNGG	4 cut(s)	26, 106, 635, 696
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 302, 702
Bse1I	ACTGG	3 cut(s)	220, 296, 449
Bse3DI	GCAATG	2 cut(s)	42, 503
BseAI	TCCGGA	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	4 cut(s)	26, 106, 635, 696
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	3 cut(s)	28, 302, 702
BseMI	GCAATG	2 cut(s)	42, 503
BseMII	CTCAG	2 cut(s)	144, 770
BseNI	ACTGG	3 cut(s)	220, 296, 449
BseRI	GAGGAG	1 cut(s)	718
BseXI	GCAGC	1 cut(s)	736
BseYI	CCCAGC	1 cut(s)	557
BshFI	GGCC	1 cut(s)	21
BshNI	GGYRCC	2 cut(s)	377, 529
BshVI	ATCGAT	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	3 cut(s)	28, 302, 702
BsnI	GGCC	1 cut(s)	21
Bsp13I	TCCGGA	1 cut(s)	95
Bsp1407I	TGTACA	2 cut(s)	3, 160
Bsp143I	GATC	3 cut(s)	143, 186, 190
BspACI	CCGC	4 cut(s)	32, 53, 194, 519
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	2 cut(s)	145, 769
BspDI	ATCGAT	1 cut(s)	189
BspEI	TCCGGA	1 cut(s)	95
BspLI	GGNNCC	3 cut(s)	294, 379, 531
BspPI	GGATC	3 cut(s)	151, 185, 194
BspT107I	GGYRCC	2 cut(s)	377, 529
BsrDI	GCAATG	2 cut(s)	42, 503
BsrGI	TGTACA	2 cut(s)	3, 160
BsrI	ACTGG	3 cut(s)	220, 296, 449
BssECI	CCNNGG	4 cut(s)	26, 106, 635, 696
BssMI	GATC	3 cut(s)	143, 186, 190
BssT1I	CCWWGG	1 cut(s)	635
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	4 cut(s)	8, 86, 534, 793
Bst6I	CTCTTC	1 cut(s)	674
BstAUI	TGTACA	2 cut(s)	3, 160
BstBAI	YACGTR	1 cut(s)	774
BstC8I	GCNNGC	5 cut(s)	23, 308, 397, 464, 722
BstDEI	CTNAG	2 cut(s)	153, 756
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	47
BstKTI	GATC	3 cut(s)	146, 189, 193
BstMBI	GATC	3 cut(s)	143, 186, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	468, 563
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	736
BstV2I	GAAGAC	3 cut(s)	404, 652, 677
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	642
BtsCI	GGATG	1 cut(s)	47
Cac8I	GCNNGC	5 cut(s)	23, 308, 397, 464, 722
Cfr13I	GGNCC	1 cut(s)	279
ClaI	ATCGAT	1 cut(s)	189
Csp6I	GTAC	5 cut(s)	4, 82, 161, 378, 590
CviAII	CATG	2 cut(s)	544, 652
CviQI	GTAC	5 cut(s)	4, 82, 161, 378, 590
DdeI	CTNAG	2 cut(s)	153, 756
DpnI	GATC	3 cut(s)	145, 188, 192
DpnII	GATC	3 cut(s)	143, 186, 190
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	453
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	635
EcoT22I	ATGCAT	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	635
FaeI	CATG	2 cut(s)	547, 655
FatI	CATG	2 cut(s)	543, 651
FauI	CCCGC	1 cut(s)	60
FauNDI	CATATG	2 cut(s)	124, 553
Fnu4HI	GCNGC	2 cut(s)	33, 725
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	33, 725
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	2 cut(s)	33, 725
GsaI	CCCAGC	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	2 cut(s)	547, 655
HinfI	GANTC	3 cut(s)	61, 657, 713
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	3 cut(s)	536, 679, 712
Hpy166II	GTNNAC	1 cut(s)	771
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	771
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	4 cut(s)	8, 86, 534, 793
HpyCH4IV	ACGT	3 cut(s)	641, 773, 786
HpyCH4V	TGCA	4 cut(s)	122, 344, 488, 651
HpyF10VI	GCNNNNNNNGC	2 cut(s)	468, 563
HpyF3I	CTNAG	2 cut(s)	153, 756
HpySE526I	ACGT	3 cut(s)	641, 773, 786
Hsp92II	CATG	2 cut(s)	547, 655
Kpn2I	TCCGGA	1 cut(s)	95
KpnI	GGTACC	1 cut(s)	381
Kzo9I	GATC	3 cut(s)	143, 186, 190
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	736
LweI	GCATC	2 cut(s)	56, 621
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	3 cut(s)	641, 773, 786
MaeIII	GTNAC	2 cut(s)	759, 787
MalI	GATC	3 cut(s)	145, 188, 192
MboI	GATC	3 cut(s)	143, 186, 190
MboII	GAAGA	5 cut(s)	145, 404, 652, 682, 691
MluCI	AATT	3 cut(s)	73, 236, 796
MlyI	GAGTC	1 cut(s)	666
MnlI	CCTC	7 cut(s)	11, 222, 296, 520, 691, 696, 774
Mph1103I	ATGCAT	1 cut(s)	653
MroI	TCCGGA	1 cut(s)	95
MseI	TTAA	2 cut(s)	101, 795
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	468, 563
NdeI	CATATG	2 cut(s)	124, 553
NdeII	GATC	3 cut(s)	143, 186, 190
NlaIII	CATG	2 cut(s)	547, 655
NlaIV	GGNNCC	3 cut(s)	294, 379, 531
NmeAIII	GCCGAG	1 cut(s)	721
NsiI	ATGCAT	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	61, 713
PkrI	GCNGC	2 cut(s)	34, 726
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
Ppu21I	YACGTR	1 cut(s)	774
PshBI	ATTAAT	1 cut(s)	101
PsiI	TTATAA	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	786
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	3 cut(s)	294, 379, 531
PspPI	GGNCC	1 cut(s)	279
RsaI	GTAC	5 cut(s)	5, 83, 162, 379, 591
RsaNI	GTAC	5 cut(s)	4, 82, 161, 378, 590
SaqAI	TTAA	2 cut(s)	101, 795
SatI	GCNGC	2 cut(s)	33, 725
Sau3AI	GATC	3 cut(s)	143, 186, 190
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	1 cut(s)	666
ScrFI	CCNGG	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	56, 621
SinI	GGWCC	1 cut(s)	279
Sse9I	AATT	3 cut(s)	73, 236, 796
SsiI	CCGC	4 cut(s)	32, 53, 194, 519
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	635
TaaI	ACNGT	4 cut(s)	8, 86, 534, 793
TaiI	ACGT	3 cut(s)	644, 776, 789
TaqI	TCGA	1 cut(s)	189
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	3 cut(s)	73, 236, 796
TatI	WGTACW	3 cut(s)	3, 160, 589
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	61, 713
Tru1I	TTAA	2 cut(s)	101, 795
Tru9I	TTAA	2 cut(s)	101, 795
TseI	GCWGC	1 cut(s)	724
TspDTI	ATGAA	3 cut(s)	74, 501, 692
TspGWI	ACGGA	4 cut(s)	54, 95, 305, 613
VpaK11BI	GGWCC	1 cut(s)	279
VspI	ATTAAT	1 cut(s)	101
XapI	RAATTY	1 cut(s)	73
XspI	CTAG	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.