FvH4_4g10910

YIF1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009482
Physical Location & Seq
Forward (+)
14592568 .. 14595470
2903 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10910.t1

Sequence Viewer

Length: 792 bp
ATGTACAATAATGTGGGAGCCCAGCCTGCAAATCCCCAGCCTAATCCCTTCGGAAATACCTTTTATGGCGCTGGTTCAGGACTTATCCGAGGTGGATTGGGTGCCTATGGAGAGAAAATTCTAGGATCAAGCTCTGACTATGTACAAAGCAATATTAGTAGATATTTCTCTGATCCTCAGTATTACTTCCAAGTGAATGATCAGTATGTGAGGAACAAATTGAAGGTTGTTCTATTTCCATTTCTGCACAGGGGTCATTGGACACGGATAACTGAGCCAGTAGGAGGCAGACTTTCTTATAAACCCCCAATATATGATATCAATGCACCTGACCTATACATCCCCTTTATGGCATTTGGTACCTATGTGGTTTTAGCTGGCTTCTCATTGGGTCGTCATGGGAAGTTCAGCCCTGAGGCTTTAAACTGGTTATTCATCAAGGGATTGCTTGGCTGGCTTGTGCAAGTTATAATTCTGAAAGTCACGTTGTTTTTATTGGGTAGTGGTGAGGCACCCTTGCTAGACCTAGTGGCATATGCTGGGTATACTTTCACAGGGTTGTGCTTGGCTGTGCTTGGACGGATTATGTGGAATTACTCGTACTATTTTTTGATGCTTTGGACCTGTGTATGCATGGGAGTGTTCTTAGTGAAGACTATGAAGAGAGTCCTCTTTGCAGAAGTGAGGAGTTATGATTCAAGCAAGCACCATTATCTCCTGCTCTTCATTGCTTTGGCTCAGTTCCCGGTATTTACTTGGCTCGGTAACGTGAGTGTTAATTGGCTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YIF1

Protein Analysis

264

Amino Acids

29.73

Weight (kDa)

9.32

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YIF1 PF03878 35 - 254 5.2e-58 YIF1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 300, 470
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 3 cut(s) 101, 359, 511
AccI GTMKAC 1 cut(s) 545
AclWI GGATC 2 cut(s) 133, 167
AcsI RAATTY 1 cut(s) 117
AfaI GTAC 4 cut(s) 5, 144, 361, 602
AfiI CCNNNNNNNGG 2 cut(s) 284, 349
AgsI TTSAA 2 cut(s) 223, 699
AluBI AGCT 2 cut(s) 132, 377
AluI AGCT 2 cut(s) 132, 377
AlwI GGATC 2 cut(s) 133, 167
ApoI RAATTY 1 cut(s) 117
Asp718I GGTACC 1 cut(s) 359
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 621
AsuC2I CCSGG 1 cut(s) 746
AsuHPI GGTGA 1 cut(s) 518
AvaII GGWCC 1 cut(s) 621
AxyI CCTNAGG 1 cut(s) 414
BaeI ACNNNNGTAYC 2 cut(s) 351, 384
BanI GGYRCC 3 cut(s) 101, 359, 511
BanII GRGCYC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 659
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 746
BfaI CTAG 3 cut(s) 122, 521, 527
BfoI RGCGCY 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 746
Bme18I GGWCC 1 cut(s) 621
BmgT120I GGNCC 1 cut(s) 621
BmiI GGNNCC 4 cut(s) 19, 103, 361, 513
BmrFI CCNGG 1 cut(s) 746
BmsI GCATC 1 cut(s) 603
BpiI GAAGAC 1 cut(s) 659
BpuMI CCSGG 1 cut(s) 746
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 349
Bse1I ACTGG 2 cut(s) 278, 431
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 2 cut(s) 284, 349
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 4 cut(s) 191, 264, 405, 752
BseNI ACTGG 2 cut(s) 278, 431
BseRI GAGGAG 1 cut(s) 700
BseYI CCCAGC 3 cut(s) 21, 36, 539
BsgI GTGCAG 1 cut(s) 230
BshNI GGYRCC 3 cut(s) 101, 359, 511
BsiSI CCGG 1 cut(s) 746
BslI CCNNNNNNNGG 2 cut(s) 284, 349
Bsp1286I GDGCHC 1 cut(s) 22
Bsp1407I TGTACA 2 cut(s) 3, 142
Bsp143I GATC 3 cut(s) 125, 172, 199
BspCNI CTCAG 4 cut(s) 190, 265, 406, 751
BspLI GGNNCC 4 cut(s) 19, 103, 361, 513
BspPI GGATC 2 cut(s) 133, 167
BspQI GCTCTTC 1 cut(s) 728
BspT107I GGYRCC 3 cut(s) 101, 359, 511
BsrDI GCAATG 1 cut(s) 726
BsrGI TGTACA 2 cut(s) 3, 142
BsrI ACTGG 2 cut(s) 278, 431
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 3 cut(s) 125, 172, 199
BssNAI GTATAC 1 cut(s) 546
Bst1107I GTATAC 1 cut(s) 546
Bst6I CTCTTC 2 cut(s) 656, 728
BstAUI TGTACA 2 cut(s) 3, 142
BstC8I GCNNGC 4 cut(s) 27, 379, 455, 704
BstDEI CTNAG 5 cut(s) 177, 273, 414, 646, 738
BstF5I GGATG 1 cut(s) 339
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 3 cut(s) 128, 175, 202
BstMBI GATC 3 cut(s) 125, 172, 199
BstMWI GCNNNNNNNGC 2 cut(s) 26, 454
BstSCI CCNGG 1 cut(s) 744
BstV2I GAAGAC 1 cut(s) 659
BstZ17I GTATAC 1 cut(s) 546
Bsu36I CCTNAGG 1 cut(s) 414
BtsCI GGATG 1 cut(s) 339
Cac8I GCNNGC 4 cut(s) 27, 379, 455, 704
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 621
Csp6I GTAC 4 cut(s) 4, 143, 360, 601
CviAII CATG 2 cut(s) 398, 634
CviQI GTAC 4 cut(s) 4, 143, 360, 601
DdeI CTNAG 5 cut(s) 177, 273, 414, 646, 738
DpnI GATC 3 cut(s) 127, 174, 201
DpnII GATC 3 cut(s) 125, 172, 199
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 2 cut(s) 656, 728
EarI CTCTTC 2 cut(s) 656, 728
Eco24I GRGCYC 1 cut(s) 22
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 621
Eco81I CCTNAGG 1 cut(s) 414
EcoRV GATATC 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 635
EcoT38I GRGCYC 1 cut(s) 22
FaeI CATG 2 cut(s) 401, 637
FatI CATG 2 cut(s) 397, 633
FauNDI CATATG 1 cut(s) 535
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 545
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 22
FspBI CTAG 3 cut(s) 122, 521, 527
GlaI GCGC 1 cut(s) 70
GsaI CCCAGC 3 cut(s) 25, 40, 543
HaeII RGCGCY 1 cut(s) 72
HapII CCGG 1 cut(s) 746
HhaI GCGC 1 cut(s) 71
Hin1II CATG 2 cut(s) 401, 637
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 2 cut(s) 666, 695
HpaII CCGG 1 cut(s) 746
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 5 cut(s) 53, 89, 136, 172, 477
Hpy188III TCNNGA 1 cut(s) 78
Hpy8I GTNNAC 1 cut(s) 546
HpyAV CCTTC 2 cut(s) 58, 217
HpyCH4IV ACGT 2 cut(s) 485, 768
HpyCH4V TGCA 6 cut(s) 29, 247, 326, 463, 633, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 454
HpyF3I CTNAG 5 cut(s) 177, 273, 414, 646, 738
HpySE526I ACGT 2 cut(s) 485, 768
Hsp92II CATG 2 cut(s) 401, 637
HspAI GCGC 1 cut(s) 69
KpnI GGTACC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 125, 172, 199
LguI GCTCTTC 1 cut(s) 728
LmnI GCTCC 1 cut(s) 17
LweI GCATC 1 cut(s) 603
MaeI CTAG 3 cut(s) 122, 521, 527
MaeII ACGT 2 cut(s) 485, 768
MaeIII GTNAC 2 cut(s) 481, 764
MalI GATC 3 cut(s) 127, 174, 201
MboI GATC 3 cut(s) 125, 172, 199
MboII GAAGA 3 cut(s) 664, 673, 715
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 5 cut(s) 117, 218, 471, 592, 778
MlyI GAGTC 1 cut(s) 675
MnlI CCTC 8 cut(s) 83, 186, 204, 278, 409, 502, 678, 680
Mph1103I ATGCAT 1 cut(s) 635
MseI TTAA 2 cut(s) 422, 777
MslI CAYNNNNRTG 1 cut(s) 638
MspI CCGG 1 cut(s) 746
MspR9I CCNGG 1 cut(s) 746
MwoI GCNNNNNNNGC 2 cut(s) 26, 454
NciI CCSGG 1 cut(s) 746
NdeI CATATG 1 cut(s) 535
NdeII GATC 3 cut(s) 125, 172, 199
NlaIII CATG 2 cut(s) 401, 637
NlaIV GGNNCC 4 cut(s) 19, 103, 361, 513
NmuCI GTSAC 1 cut(s) 481
NsiI ATGCAT 1 cut(s) 635
PciSI GCTCTTC 1 cut(s) 728
PfeI GAWTC 1 cut(s) 695
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
PsiI TTATAA 2 cut(s) 300, 470
PspFI CCCAGC 3 cut(s) 21, 36, 539
PspN4I GGNNCC 4 cut(s) 19, 103, 361, 513
PspPI GGNCC 1 cut(s) 621
RsaI GTAC 4 cut(s) 5, 144, 361, 602
RsaNI GTAC 4 cut(s) 4, 143, 360, 601
RseI CAYNNNNRTG 1 cut(s) 638
SapI GCTCTTC 1 cut(s) 728
SaqAI TTAA 2 cut(s) 422, 777
Sau3AI GATC 3 cut(s) 125, 172, 199
Sau96I GGNCC 1 cut(s) 621
SchI GAGTC 1 cut(s) 675
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 1 cut(s) 22
SfaNI GCATC 1 cut(s) 603
SinI GGWCC 1 cut(s) 621
SmiMI CAYNNNNRTG 1 cut(s) 638
Sse9I AATT 5 cut(s) 117, 218, 471, 592, 778
SspI AATATT 1 cut(s) 154
SspMI CTAG 3 cut(s) 122, 521, 527
StyD4I CCNGG 1 cut(s) 744
TaiI ACGT 2 cut(s) 488, 771
TasI AATT 5 cut(s) 117, 218, 471, 592, 778
TatI WGTACW 2 cut(s) 3, 142
TfiI GAWTC 1 cut(s) 695
Tru1I TTAA 2 cut(s) 422, 777
Tru9I TTAA 2 cut(s) 422, 777
TseFI GTSAC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 424, 674, 715
TspGWI ACGGA 2 cut(s) 280, 595
VpaK11BI GGWCC 1 cut(s) 621
XapI RAATTY 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 545
XspI CTAG 3 cut(s) 122, 521, 527
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.