Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000186.1

Orthogroup ID

OG0009482

Physical Location & Seq

Genomic Coordinates Reverse (-)

95642 .. 99086

Gene Structure 3445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000186.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgtacaataatgtgggagcccagcctggtgtgccgagaccacctgcaaatccccagcctaatccgtttggaaatacgttttatggtgctggttcaggacttatccgaggtggattgggtgcctatggagagaaaattctaggatcaagctctgagtatgtacaaagcaacattagtagatatttctctgatcctcagtattacttccaagtgaatgatcagtatgtgaggaacaaattgaaggtggttctatttccatttctgcacaggggtcattggacacggataactgagcccgtaggaggcagactttcttataaacccccaatatacgatatcaatgcacccgacctatacattccctttatggcatttggtacctatgtggttttggctggcttctcattgggtcgtcatgggaagttcagccctgaggctctaaactggttatttatcaagggattgcttggctggtttgtgcaagttataattctgaaaatcacgttgttttcattgggtggcggtgaggcgcccttgctagatatggtggcatatgcagggtatactttcactgggttatgcttggctgtgcttggacggattatgtggaattattcgtactattttttgatgccttggacctgtttatgcatgggagtcttcttggtgaagactatgaagagagtcctctttgcagaggtgaggagttatgattcaagcaagcaccattatctcctgctcttcattgctttggctcagttcccagtttttacttggcttggtaacattagtgttaattggctgatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YIF1

Protein Analysis

269

Amino Acids

30.37

Weight (kDa)

9.4

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30890 AT1G30890 AT3G59500 AT3G59500
fragaria_vesca	FvH4_4g10910
malus_domestica	MD09G1251200.v1.1 MD17G1243500.v1.1
prunus_persica	Prupe.3G156000_v2.0.a1 Prupe.3G156000_v2.0.a1
pyrus_communis	pycom09g16760 pycom17g24610
rosa_chinensis	RchiOBHm_Chr4g0406461
rosa_laevigata	RLG00000008769
rosa_multiflora	Rmu_ssc0000186.1_g000019
rosa_roxburghii	Rroxscaffold_5G00351340
rosa_rugosa	Rorug04G0071500 Rorug04G0071600
rosa_samantha	Rh4AG138500 Rh4BG135700 Rh4CG145900 Rh4DG133000
rosa_wichuraiana	Rw4G011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	318, 488
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	1 cut(s)	52
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	3 cut(s)	119, 377, 529
AccI	GTMKAC	1 cut(s)	563
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	2 cut(s)	151, 185
AcsI	RAATTY	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	530
AfaI	GTAC	4 cut(s)	5, 162, 379, 620
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	241, 717
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	2 cut(s)	151, 185
ApoI	RAATTY	1 cut(s)	135
Asp718I	GGTACC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	639
AsuHPI	GGTGA	3 cut(s)	536, 679, 712
AvaII	GGWCC	1 cut(s)	639
AxyI	CCTNAGG	1 cut(s)	432
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BanI	GGYRCC	3 cut(s)	119, 377, 529
BanII	GRGCYC	2 cut(s)	22, 297
BbsI	GAAGAC	2 cut(s)	652, 677
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	2 cut(s)	140, 539
BfoI	RGCGCY	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	639
BmgT120I	GGNCC	1 cut(s)	639
BmiI	GGNNCC	4 cut(s)	19, 121, 379, 531
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	2 cut(s)	582, 758
BmsI	GCATC	1 cut(s)	621
BmuI	ACTGGG	2 cut(s)	582, 758
BpiI	GAAGAC	2 cut(s)	652, 677
BsaHI	GRCGYC	1 cut(s)	530
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	106, 635
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	3 cut(s)	449, 577, 764
Bse21I	CCTNAGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	106, 635
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	5 cut(s)	144, 209, 282, 423, 770
BseNI	ACTGG	3 cut(s)	449, 577, 764
BseRI	GAGGAG	1 cut(s)	718
BseYI	CCCAGC	2 cut(s)	21, 54
BsgI	GTGCAG	1 cut(s)	248
BshNI	GGYRCC	3 cut(s)	119, 377, 529
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	31
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	22, 297
Bsp1407I	TGTACA	2 cut(s)	3, 160
Bsp143I	GATC	3 cut(s)	143, 190, 217
BspACI	CCGC	1 cut(s)	522
BspCNI	CTCAG	5 cut(s)	145, 208, 283, 424, 769
BspLI	GGNNCC	4 cut(s)	19, 121, 379, 531
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	2 cut(s)	151, 185
BspQI	GCTCTTC	1 cut(s)	746
BspT107I	GGYRCC	3 cut(s)	119, 377, 529
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	744
BsrGI	TGTACA	2 cut(s)	3, 160
BsrI	ACTGG	3 cut(s)	449, 577, 764
BssECI	CCNNGG	2 cut(s)	106, 635
BssMI	GATC	3 cut(s)	143, 190, 217
BssNAI	GTATAC	1 cut(s)	564
BssNI	GRCGYC	1 cut(s)	530
BssT1I	CCWWGG	1 cut(s)	635
Bst1107I	GTATAC	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	27
Bst6I	CTCTTC	2 cut(s)	674, 746
BstACI	GRCGYC	1 cut(s)	530
BstAUI	TGTACA	2 cut(s)	3, 160
BstC8I	GCNNGC	2 cut(s)	397, 722
BstDEI	CTNAG	5 cut(s)	153, 195, 291, 432, 756
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	3 cut(s)	146, 193, 220
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	3 cut(s)	143, 190, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstV2I	GAAGAC	2 cut(s)	652, 677
BstZ17I	GTATAC	1 cut(s)	564
Bsu36I	CCTNAGG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	570
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	2 cut(s)	397, 722
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	639
Csp6I	GTAC	4 cut(s)	4, 161, 378, 619
CviAII	CATG	2 cut(s)	416, 652
CviQI	GTAC	4 cut(s)	4, 161, 378, 619
DdeI	CTNAG	5 cut(s)	153, 195, 291, 432, 756
DinI	GGCGCC	1 cut(s)	531
DpnI	GATC	3 cut(s)	145, 192, 219
DpnII	GATC	3 cut(s)	143, 190, 217
Eam1104I	CTCTTC	2 cut(s)	674, 746
EarI	CTCTTC	2 cut(s)	674, 746
Eco130I	CCWWGG	1 cut(s)	635
Eco24I	GRGCYC	2 cut(s)	22, 297
Eco31I	GGTCTC	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	639
Eco81I	CCTNAGG	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	25
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	635
EcoT22I	ATGCAT	1 cut(s)	653
EcoT38I	GRGCYC	2 cut(s)	22, 297
EgeI	GGCGCC	1 cut(s)	531
EheI	GGCGCC	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	635
FaeI	CATG	2 cut(s)	419, 655
FatI	CATG	2 cut(s)	415, 651
FauNDI	CATATG	1 cut(s)	553
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	563
FriOI	GRGCYC	2 cut(s)	22, 297
FspBI	CTAG	2 cut(s)	140, 539
GlaI	GCGC	1 cut(s)	531
GsaI	CCCAGC	2 cut(s)	25, 58
HaeII	RGCGCY	1 cut(s)	533
HhaI	GCGC	1 cut(s)	532
Hin1I	GRCGYC	1 cut(s)	530
Hin1II	CATG	2 cut(s)	419, 655
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HinfI	GANTC	3 cut(s)	657, 684, 713
HphI	GGTGA	3 cut(s)	536, 679, 712
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	4 cut(s)	107, 154, 190, 495
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	564
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	77, 503
HpyCH4V	TGCA	7 cut(s)	47, 265, 344, 481, 557, 651, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	5 cut(s)	153, 195, 291, 432, 756
HpySE526I	ACGT	2 cut(s)	77, 503
Hsp92I	GRCGYC	1 cut(s)	530
Hsp92II	CATG	2 cut(s)	419, 655
HspAI	GCGC	1 cut(s)	530
KasI	GGCGCC	1 cut(s)	529
KpnI	GGTACC	1 cut(s)	381
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	143, 190, 217
LguI	GCTCTTC	1 cut(s)	746
LmnI	GCTCC	1 cut(s)	17
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	2 cut(s)	140, 539
MaeII	ACGT	2 cut(s)	77, 503
MaeIII	GTNAC	1 cut(s)	782
MalI	GATC	3 cut(s)	145, 192, 219
MboI	GATC	3 cut(s)	143, 190, 217
MboII	GAAGA	4 cut(s)	652, 682, 691, 733
MhlI	GDGCHC	2 cut(s)	22, 297
MluCI	AATT	5 cut(s)	135, 236, 489, 610, 796
Mly113I	GGCGCC	1 cut(s)	530
MlyI	GAGTC	2 cut(s)	666, 693
MnlI	CCTC	9 cut(s)	101, 204, 222, 296, 427, 520, 691, 696, 698
Mph1103I	ATGCAT	1 cut(s)	653
MseI	TTAA	1 cut(s)	795
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	31
NarI	GGCGCC	1 cut(s)	530
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	3 cut(s)	143, 190, 217
NlaIII	CATG	2 cut(s)	419, 655
NlaIV	GGNNCC	4 cut(s)	19, 121, 379, 531
NmeAIII	GCCGAG	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	653
PaqCI	CACCTGC	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	746
PfeI	GAWTC	1 cut(s)	713
PleI	GAGTC	2 cut(s)	665, 692
PluTI	GGCGCC	1 cut(s)	533
PpsI	GAGTC	2 cut(s)	665, 692
PsiI	TTATAA	2 cut(s)	318, 488
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	2 cut(s)	21, 54
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	4 cut(s)	19, 121, 379, 531
PspPI	GGNCC	1 cut(s)	639
RsaI	GTAC	4 cut(s)	5, 162, 379, 620
RsaNI	GTAC	4 cut(s)	4, 161, 378, 619
SapI	GCTCTTC	1 cut(s)	746
SaqAI	TTAA	1 cut(s)	795
Sau3AI	GATC	3 cut(s)	143, 190, 217
Sau96I	GGNCC	1 cut(s)	639
SchI	GAGTC	2 cut(s)	666, 693
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	22, 297
SfaNI	GCATC	1 cut(s)	621
SfoI	GGCGCC	1 cut(s)	531
SinI	GGWCC	1 cut(s)	639
Sse9I	AATT	5 cut(s)	135, 236, 489, 610, 796
SsiI	CCGC	1 cut(s)	522
SspDI	GGCGCC	1 cut(s)	529
SspMI	CTAG	2 cut(s)	140, 539
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	635
TaiI	ACGT	2 cut(s)	80, 506
TasI	AATT	5 cut(s)	135, 236, 489, 610, 796
TatI	WGTACW	2 cut(s)	3, 160
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TscAI	CASTG	1 cut(s)	577
TspDTI	ATGAA	3 cut(s)	501, 692, 733
TspGWI	ACGGA	3 cut(s)	54, 298, 613
TspRI	CASTG	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	639
XapI	RAATTY	1 cut(s)	135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771
XmiI	GTMKAC	1 cut(s)	563
XspI	CTAG	2 cut(s)	140, 539
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.