AT1G31814

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013187
Physical Location & Seq
Reverse (-)
11412392 .. 11414502
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31814.1

Sequence Viewer

Length: 1422 bp
ATGACGGCGGCGGAATCAATCGCCGCATCGATTAATCAAATTGATGAGAAGAAACAAAAATTGAAGAAAGCTTTCGATGATCTTCAAGCTCATCGATCTCTCCTTTCACCATCTTTTAACCTCTCATGGTCTGAGATTGACTCTCACTTTTCTTCTCTCCAGTCTTCATTGTTTAACCGCCTCCAATCAGCCGTGACTAGTTCCAATTCCGGTAATATCGAAACTCCCACGGCGGTTACGACGGAGACACCAGTCCTTTGGCCGGAATTGAGAAAGTTTTGTGAGAAGAATGATGGAAAAGGTTTGGGTAACTACATGATTGAGAATTCGAGGAAGCGTTTATCTATCAATGAAGAGCTTCCTAATGCGATTCGATGCTCAGAGAATCCAGCACCTTTGGTTCTAGATGCAATCGAAGGTTCTTACCATTGCTCATCACCATCGTCGTCTTCCTCGGCGAGAGCGATCGATGTGAAGAGGATCTTCGTTTTGTTATTAGAAGCTTTGATTGAGATCAATGCGAATCTCACGAATGATTTGAGAGAAAGAGCTAGGACTATTGCTTATGATTGGAAACCAAATATAGGTAACAAACCATCAGAAGCGTTAGGGTTTTTGCATTTGGTTGCAGCTTTTGAATTAGGGTCTTTATTTAGTACTGAGGAGATTTGTGATTACATTTTCTTGATCTCTAAGTATAAACAAGCAACAACGATCTGCAAGAAGATTGGTTTAGATAGAAATCGAATAGGAGTTCTCGTTCAGAAGTTTTTGGATACTGGGAGATTACTTGTTGCTATTAGATTCATTTACGAGAATGAGATGGTGGGTGAATTTGAACCAGTTTCGATTTTGAAAACTAGTTTGAAGAACTCTAGAGAAGCTGCTAAGAGAGTTTGTGCTGAAGGGAATTACTCTCTTAAGGTGCAGAACGAAGCTACTGATAAAGAACTAAGTGCTTTGAGAGCAGTTATCAAAGTCGTGAAAGAGAAAAACATCGAGTCCGAGTTCATGGAAGAGAAACTCGAAGAATGTGTTAAGGAGTTGGAGGATCAGAAAGCTCAGAGGAAGCGTGCCACTAAGTTCAATTCACCTGCTAATCCCCAACAACCACAAGAACAAAAGGTCGATAATAAGCGTCCTCGAGTTGCTAATGGTTCAAGTATGGAATATAATTTGACAATCCCACCTCTGAGGCCGCAACAACAACCACCACTTTTGCCTACTCCTAGTCAGATTTTACAAGTGAACCCATATGGTCTTTTAAGCTCAATACTTCCTGGTGTTGCTGTCCCATATGGCAACCCAAGGGCTCTATTTGGCTCGGTTCCAGCTCCAGCTTCTCGACCCGTCTTTTATGTGCAGCAAACTGGTTATGGGATGCCACCACCTCAGTACCGCCCACCGTACTATCCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

473

Amino Acids

52.86

Weight (kDa)

8.63

Isoelectric Point (pI)

61.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 84 - 360 3.8e-91 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31814 AT5G16320
fragaria_vesca FvH4_3g24000
malus_domestica MD11G1205100.v1.1
prunus_persica Prupe.4G232500_v2.0.a1
pyrus_communis pycom11g17780
rosa_chinensis RchiOBHm_Chr5g0042571
rosa_laevigata RLG00000034141
rosa_multiflora Rmu_sc0004704.1_g000003
rosa_roxburghii Rroxscaffold_1G00038070
rosa_rugosa Rorug05G0202600 Rorug05G0202700 Rorug05G0202800
rosa_samantha Rh5AG287800 Rh5BG292200 Rh5CG324600 Rh5DG302000
rosa_wichuraiana Rw5G026720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1102
Acc36I ACCTGC 1 cut(s) 1102
AciI CCGC 7 cut(s) 8, 11, 24, 178, 233, 1199, 1399
AclWI GGATC 2 cut(s) 488, 1059
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 2 cut(s) 325, 833
AcuI CTGAAG 1 cut(s) 924
AfaI GTAC 3 cut(s) 658, 1397, 1409
AfiI CCNNNNNNNGG 2 cut(s) 262, 584
AflII CTTAAG 1 cut(s) 920
AgsI TTSAA 8 cut(s) 64, 86, 638, 839, 856, 868, 1087, 1161
AhlI ACTAGT 2 cut(s) 197, 860
AjnI CCWGG 1 cut(s) 1279
AloI GAACNNNNNNTCC 2 cut(s) 744, 776
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 2 cut(s) 488, 1059
Ama87I CYCGRG 1 cut(s) 1143
AoxI GGCC 2 cut(s) 260, 1196
ApeKI GCWGC 3 cut(s) 629, 884, 1363
ApoI RAATTY 2 cut(s) 325, 833
AseI ATTAAT 1 cut(s) 33
Asp700I GAANNNNTTC 2 cut(s) 71, 357
AsuHPI GGTGA 4 cut(s) 99, 429, 842, 1083
AvaI CYCGRG 1 cut(s) 1143
BaeI ACNNNNGTAYC 2 cut(s) 1379, 1412
BanII GRGCYC 1 cut(s) 1315
BbsI GAAGAC 2 cut(s) 156, 441
BbvI GCAGC 3 cut(s) 641, 871, 1375
BccI CCATC 5 cut(s) 118, 287, 448, 604, 817
BceAI ACGGC 3 cut(s) 21, 176, 246
BciT130I CCWGG 1 cut(s) 1281
BciVI GTATCC 1 cut(s) 769
BcoDI GTCTC 1 cut(s) 239
BcuI ACTAGT 2 cut(s) 197, 860
BfaI CTAG 6 cut(s) 198, 404, 552, 861, 876, 1230
BfrI CTTAAG 1 cut(s) 920
BfuAI ACCTGC 1 cut(s) 1102
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 6 cut(s) 9, 24, 630, 885, 1199, 1364
BlsI GCNGC 6 cut(s) 10, 25, 631, 886, 1200, 1365
BmcAI AGTACT 1 cut(s) 658
Bme1390I CCNGG 1 cut(s) 1281
BmeT110I CYCGRG 1 cut(s) 1143
BmiI GGNNCC 1 cut(s) 1329
BmrFI CCNGG 1 cut(s) 1281
BmrI ACTGGG 1 cut(s) 789
BmsI GCATC 4 cut(s) 35, 365, 397, 1371
BmuI ACTGGG 1 cut(s) 789
BoxI GACNNNNGTC 1 cut(s) 251
BpiI GAAGAC 2 cut(s) 156, 441
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpmI CTGGAG 2 cut(s) 143, 1320
Bsa29I ATCGAT 3 cut(s) 29, 94, 468
BsaBI GATNNNNATC 2 cut(s) 512, 741
BsaJI CCNNGG 3 cut(s) 228, 453, 1307
BsaWI WCCGGW 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 584
Bse1I ACTGG 5 cut(s) 160, 251, 784, 842, 1375
Bse3DI GCAATG 1 cut(s) 427
Bse8I GATNNNNATC 2 cut(s) 512, 741
BseBI CCWGG 1 cut(s) 1281
BseCI ATCGAT 3 cut(s) 29, 94, 468
BseDI CCNNGG 3 cut(s) 228, 453, 1307
BseGI GGATG 1 cut(s) 1386
BseJI GATNNNNATC 2 cut(s) 512, 741
BseLI CCNNNNNNNGG 2 cut(s) 262, 584
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 6 cut(s) 123, 393, 651, 1076, 1184, 1406
BseNI ACTGG 5 cut(s) 160, 251, 784, 842, 1375
BseRI GAGGAG 1 cut(s) 677
BseXI GCAGC 3 cut(s) 641, 871, 1375
BsgI GTGCAG 2 cut(s) 947, 1382
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 2 cut(s) 262, 1198
BshVI ATCGAT 3 cut(s) 29, 94, 468
BsiEI CGRYCG 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 1143
BsiSI CCGG 2 cut(s) 210, 263
BslFI GGGAC 1 cut(s) 1277
BslI CCNNNNNNNGG 2 cut(s) 262, 584
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 1277
BsnI GGCC 2 cut(s) 262, 1198
BsoBI CYCGRG 1 cut(s) 1143
Bsp1286I GDGCHC 1 cut(s) 1315
Bsp143I GATC 8 cut(s) 79, 95, 465, 480, 513, 687, 714, 1051
BspACI CCGC 7 cut(s) 8, 11, 24, 178, 233, 1199, 1399
BspANI GGCC 2 cut(s) 262, 1198
BspCNI CTCAG 6 cut(s) 124, 392, 652, 1075, 1185, 1405
BspDI ATCGAT 3 cut(s) 29, 94, 468
BspLI GGNNCC 1 cut(s) 1329
BspMI ACCTGC 1 cut(s) 1102
BspPI GGATC 2 cut(s) 488, 1059
BspQI GCTCTTC 1 cut(s) 348
BspTI CTTAAG 1 cut(s) 920
BsrDI GCAATG 1 cut(s) 427
BsrI ACTGG 5 cut(s) 160, 251, 784, 842, 1375
BssECI CCNNGG 3 cut(s) 228, 453, 1307
BssMI GATC 8 cut(s) 79, 95, 465, 480, 513, 687, 714, 1051
BssT1I CCWWGG 1 cut(s) 1307
Bst2UI CCWGG 1 cut(s) 1281
Bst4CI ACNGT 1 cut(s) 1407
Bst6I CTCTTC 3 cut(s) 348, 470, 1011
BstAFI CTTAAG 1 cut(s) 920
BstC8I GCNNGC 1 cut(s) 1074
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 1386
BstKTI GATC 8 cut(s) 82, 98, 468, 483, 516, 690, 717, 1054
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 8 cut(s) 79, 95, 465, 480, 513, 687, 714, 1051
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 1 cut(s) 965
BstNI CCWGG 1 cut(s) 1281
BstPAI GACNNNNGTC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 1279
BstV1I GCAGC 3 cut(s) 641, 871, 1375
BstV2I GAAGAC 2 cut(s) 156, 441
BstX2I RGATCY 1 cut(s) 480
BstXI CCANNNNNNTGG 1 cut(s) 258
BstYI RGATCY 1 cut(s) 480
Bsu15I ATCGAT 3 cut(s) 29, 94, 468
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 2 cut(s) 262, 1198
BsuTUI ATCGAT 3 cut(s) 29, 94, 468
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 1386
BveI ACCTGC 1 cut(s) 1102
Cac8I GCNNGC 1 cut(s) 1074
ClaI ATCGAT 3 cut(s) 29, 94, 468
CseI GACGC 1 cut(s) 1127
Csp6I GTAC 3 cut(s) 657, 1396, 1408
CspCI CAANNNNNGTGG 2 cut(s) 1200, 1235
CviAII CATG 3 cut(s) 126, 316, 1012
CviQI GTAC 3 cut(s) 657, 1396, 1408
DpnI GATC 8 cut(s) 81, 97, 467, 482, 515, 689, 716, 1053
DpnII GATC 8 cut(s) 79, 95, 465, 480, 513, 687, 714, 1051
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 3 cut(s) 348, 470, 1011
EarI CTCTTC 3 cut(s) 348, 470, 1011
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 1307
Eco24I GRGCYC 1 cut(s) 1315
Eco57I CTGAAG 1 cut(s) 924
Eco88I CYCGRG 1 cut(s) 1143
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 1279
EcoT14I CCWWGG 1 cut(s) 1307
EcoT38I GRGCYC 1 cut(s) 1315
ErhI CCWWGG 1 cut(s) 1307
FaeI CATG 3 cut(s) 129, 319, 1015
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 1277
FatI CATG 3 cut(s) 125, 315, 1011
FauNDI CATATG 2 cut(s) 1255, 1297
Fnu4HI GCNGC 6 cut(s) 9, 24, 630, 885, 1199, 1364
FokI GGATG 1 cut(s) 1393
FriOI GRGCYC 1 cut(s) 1315
Fsp4HI GCNGC 6 cut(s) 9, 24, 630, 885, 1199, 1364
FspBI CTAG 6 cut(s) 198, 404, 552, 861, 876, 1230
GluI GCNGC 6 cut(s) 9, 24, 630, 885, 1199, 1364
GsuI CTGGAG 2 cut(s) 143, 1320
HaeIII GGCC 2 cut(s) 262, 1198
HapII CCGG 2 cut(s) 210, 263
HgaI GACGC 1 cut(s) 1127
Hin1II CATG 3 cut(s) 129, 319, 1015
HindIII AAGCTT 2 cut(s) 69, 501
HinfI GANTC 7 cut(s) 14, 140, 370, 385, 523, 804, 1001
HpaII CCGG 2 cut(s) 210, 263
HphI GGTGA 4 cut(s) 99, 429, 842, 1083
Hpy166II GTNNAC 1 cut(s) 1249
Hpy188I TCNGA 9 cut(s) 133, 382, 601, 765, 1006, 1056, 1065, 1194, 1236
Hpy188III TCNNGA 6 cut(s) 404, 529, 685, 876, 982, 1344
Hpy8I GTNNAC 1 cut(s) 1249
Hpy99I CGWCG 2 cut(s) 244, 448
HpyAV CCTTC 2 cut(s) 410, 899
HpyCH4III ACNGT 1 cut(s) 1407
HpyCH4V TGCA 6 cut(s) 410, 619, 629, 720, 928, 1363
HpyF10VI GCNNNNNNNGC 1 cut(s) 965
Hsp92II CATG 3 cut(s) 129, 319, 1015
Kzo9I GATC 8 cut(s) 79, 95, 465, 480, 513, 687, 714, 1051
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 1339
Lsp1109I GCAGC 3 cut(s) 641, 871, 1375
LweI GCATC 4 cut(s) 35, 365, 397, 1371
MaeI CTAG 6 cut(s) 198, 404, 552, 861, 876, 1230
MaeIII GTNAC 4 cut(s) 193, 235, 308, 587
MalI GATC 8 cut(s) 81, 97, 467, 482, 515, 689, 716, 1053
MboI GATC 8 cut(s) 79, 95, 465, 480, 513, 687, 714, 1051
MflI RGATCY 1 cut(s) 480
MhlI GDGCHC 1 cut(s) 1315
MlyI GAGTC 2 cut(s) 134, 1010
MmeI TCCRAC 1 cut(s) 1026
MroXI GAANNNNTTC 2 cut(s) 71, 357
MseI TTAA 6 cut(s) 33, 117, 174, 921, 1038, 1265
MspCI CTTAAG 1 cut(s) 920
MspI CCGG 2 cut(s) 210, 263
MspR9I CCNGG 1 cut(s) 1281
MvaI CCWGG 1 cut(s) 1281
MwoI GCNNNNNNNGC 1 cut(s) 965
NdeI CATATG 2 cut(s) 1255, 1297
NdeII GATC 8 cut(s) 79, 95, 465, 480, 513, 687, 714, 1051
NlaIII CATG 3 cut(s) 129, 319, 1015
NlaIV GGNNCC 1 cut(s) 1329
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 1143
PaqCI CACCTGC 1 cut(s) 1102
PciSI GCTCTTC 1 cut(s) 348
PcsI WCGNNNNNNNCGW 2 cut(s) 236, 461
PdmI GAANNNNTTC 2 cut(s) 71, 357
PfeI GAWTC 5 cut(s) 14, 370, 385, 523, 804
PkrI GCNGC 6 cut(s) 10, 25, 631, 886, 1200, 1365
Ple19I CGATCG 1 cut(s) 468
PleI GAGTC 2 cut(s) 134, 1009
PpsI GAGTC 2 cut(s) 134, 1009
PshAI GACNNNNGTC 1 cut(s) 251
PshBI ATTAAT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 1279
PspGI CCWGG 1 cut(s) 1279
PspN4I GGNNCC 1 cut(s) 1329
PspXI VCTCGAGB 1 cut(s) 1143
PsuI RGATCY 1 cut(s) 480
PvuI CGATCG 1 cut(s) 468
RsaI GTAC 3 cut(s) 658, 1397, 1409
RsaNI GTAC 3 cut(s) 657, 1396, 1408
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 6 cut(s) 33, 117, 174, 921, 1038, 1265
SatI GCNGC 6 cut(s) 9, 24, 630, 885, 1199, 1364
Sau3AI GATC 8 cut(s) 79, 95, 465, 480, 513, 687, 714, 1051
ScaI AGTACT 1 cut(s) 658
SchI GAGTC 2 cut(s) 134, 1010
ScrFI CCNGG 1 cut(s) 1281
SduI GDGCHC 1 cut(s) 1315
SfaNI GCATC 4 cut(s) 35, 365, 397, 1371
Sfr274I CTCGAG 1 cut(s) 1143
SlaI CTCGAG 1 cut(s) 1143
SmlI CTYRAG 2 cut(s) 920, 1143
SmoI CTYRAG 2 cut(s) 920, 1143
SpeI ACTAGT 2 cut(s) 197, 860
SsiI CCGC 7 cut(s) 8, 11, 24, 178, 233, 1199, 1399
SspMI CTAG 6 cut(s) 198, 404, 552, 861, 876, 1230
StyD4I CCNGG 1 cut(s) 1279
StyI CCWWGG 1 cut(s) 1307
TaaI ACNGT 1 cut(s) 1407
TatI WGTACW 1 cut(s) 656
TauI GCSGC 3 cut(s) 11, 26, 1201
TfiI GAWTC 5 cut(s) 14, 370, 385, 523, 804
Tru1I TTAA 6 cut(s) 33, 117, 174, 921, 1038, 1265
Tru9I TTAA 6 cut(s) 33, 117, 174, 921, 1038, 1265
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 3 cut(s) 629, 884, 1363
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 4 cut(s) 156, 366, 796, 1000
TspGWI ACGGA 1 cut(s) 257
Vha464I CTTAAG 1 cut(s) 920
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 2 cut(s) 325, 833
XbaI TCTAGA 2 cut(s) 403, 875
XhoI CTCGAG 1 cut(s) 1143
XmnI GAANNNNTTC 2 cut(s) 71, 357
XspI CTAG 6 cut(s) 198, 404, 552, 861, 876, 1230
ZrmI AGTACT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.