Rh5AG287800

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013187
Physical Location & Seq
Forward (+)
39027793 .. 39033444
5652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG287800.1

Sequence Viewer

Length: 1296 bp
ATGGCGACAAGAGCGGAAACAATCTCAGCGGCTATGCAACTGATCGACCCAAAGAAAGAGAACCTAAAGAAGGCCTTCGACGACCTTCAATCCCACTCCGACGTCCTCTCTCTCTTCTCTCTCACCTGGTCCGACCTCGATTCCCATTTCACCTCCCTCCAAAACTCCCTTTCCCAAAAACTCCAACTCCTCCAAACCCTAGAGTCCCAATCCCCAAACCCTTCTTCCTCTGCCTCAATCCCACAAACCCAGATAACCCAAGACCCGTCTTCGTCGAATTTAGTGACCCAGATACCAAAGGACTCATCTTTGGACCCCAAAGCACCAACCCAGATAGCAAAGGATCAGAATTTGCCGACCCAGGTGGCAAAGGACTCATTTTTGGAGCCCAAAGCACCAACCCAGGTAGCAAAGGATCCGAATTTGTCGACCCAGGTAGCAAAGGACCCGAATTTGTCGACTCAGGTAGCGAAAGAGTCTTCTTCTTCATTGAACCCACCGAGCCGGATCAGTGTTGAGCTCAACAATGGTCATGATGCAGATGCAGTGCCTCCTCGGCCTGAGTTGGTGGCGTTTTGCGAGAAAATGGATTCAATTGGGCTGAGGAAGTATATGAATGACACTAAAAATAACCGGAACACGATCCGGTCCGAGCTCCATGGGGCTTTACGGCACGCTCAGGACCCGGCGTTGATGGTTCTCAATGCAATGGAGGGGTTTTACGTGGAGAATAAGGGTGATAAGGACCTGGAAGTGAGTAGTGTGAGGAGAACTGGTGTGCTGTTGTTGGAAGTGTTGTGTGGAGTTTCGCCAAATGTAGGAGTGGAGGTGAGGGAGAGAGCCAAGAAGTTGGCATTGGAGTGGAAAGGGAAGGTTAGTATGGAGGGAGAGAACCAGTTTGAGGCGTTGGGATTCTTGCATTTGGTGGCAGCTTATGGACTGGTGTCTGAATTCAACATGGATGAGCTTGTGGATCATTTGGTTGTTGTTGCAAGGTATAGGCAAGCTACTGATTTGTGCCGCAGACTTGGCTTGGGAGATAAGCTTGCAGATCTGATTCAGAAACTCATGAGCAATGGCAAACATCTTTTGGCTATCAAGTTCATTTCTGAATTTGATATGACTGATAAGTTTCCACCTGTTCCCATCTTAAAAGCGTATGTGAAGGAGTCTAAAAGGTTGGCCAAGAAAGTTTGTGAGGAAGGAAATAACTCTAAGAAGGCGGCGGTAATTTTACATTCTCTTATAGCTCGTCTTTGTCTTTTAAATCTAACACTTTGTCTTCTCTTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

431

Amino Acids

47.52

Weight (kDa)

6.53

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 183 - 408 3.6e-79 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31814 AT5G16320
fragaria_vesca FvH4_3g24000
malus_domestica MD11G1205100.v1.1
prunus_persica Prupe.4G232500_v2.0.a1
pyrus_communis pycom11g17780
rosa_chinensis RchiOBHm_Chr5g0042571
rosa_laevigata RLG00000034141
rosa_multiflora Rmu_sc0004704.1_g000003
rosa_roxburghii Rroxscaffold_1G00038070
rosa_rugosa Rorug05G0202600 Rorug05G0202700 Rorug05G0202800
rosa_samantha Rh5AG287800 Rh5BG292200 Rh5CG324600 Rh5DG302000
rosa_wichuraiana Rw5G026720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 105
AccBSI CCGCTC 1 cut(s) 14
AccI GTMKAC 2 cut(s) 428, 458
AciI CCGC 5 cut(s) 14, 29, 1021, 1223, 1226
AclWI GGATC 6 cut(s) 351, 410, 423, 515, 637, 981
AcoI YGGCCR 1 cut(s) 1182
AcsI RAATTY 6 cut(s) 277, 349, 421, 451, 950, 1112
AcyI GRCGYC 1 cut(s) 102
AfiI CCNNNNNNNGG 3 cut(s) 70, 818, 901
AgsI TTSAA 4 cut(s) 89, 493, 594, 955
AjnI CCWGG 5 cut(s) 125, 360, 402, 432, 747
AjuI GAANNNNNNNTTGG 4 cut(s) 208, 240, 839, 871
AluBI AGCT 7 cut(s) 520, 655, 932, 967, 1007, 1045, 1250
AluI AGCT 7 cut(s) 520, 655, 932, 967, 1007, 1045, 1250
Alw21I GWGCWC 2 cut(s) 522, 657
AlwI GGATC 6 cut(s) 351, 410, 423, 515, 637, 981
AoxI GGCC 3 cut(s) 72, 557, 1182
ApeKI GCWGC 1 cut(s) 929
ApoI RAATTY 6 cut(s) 277, 349, 421, 451, 950, 1112
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 6 cut(s) 129, 313, 445, 648, 682, 745
AsuC2I CCSGG 1 cut(s) 686
AsuHPI GGTGA 4 cut(s) 115, 142, 749, 841
AvaII GGWCC 6 cut(s) 129, 313, 445, 648, 682, 745
BalI TGGCCA 1 cut(s) 1184
BamHI GGATCC 1 cut(s) 415
BanII GRGCYC 3 cut(s) 390, 522, 657
BbsI GAAGAC 3 cut(s) 261, 471, 1274
Bbv12I GWGCWC 2 cut(s) 522, 657
BbvCI CCTCAGC 1 cut(s) 602
BbvI GCAGC 1 cut(s) 941
BccI CCATC 2 cut(s) 688, 1154
BceAI ACGGC 1 cut(s) 686
BciT130I CCWGG 5 cut(s) 127, 362, 404, 434, 749
BcnI CCSGG 1 cut(s) 686
BfaI CTAG 1 cut(s) 200
BglI GCCNNNNNGGC 1 cut(s) 556
BglII AGATCT 1 cut(s) 1051
BisI GCNGC 4 cut(s) 30, 930, 1021, 1224
BlsI GCNGC 4 cut(s) 31, 931, 1022, 1225
Bme1390I CCNGG 6 cut(s) 127, 362, 404, 434, 686, 749
Bme18I GGWCC 6 cut(s) 129, 313, 445, 648, 682, 745
BmgT120I GGNCC 6 cut(s) 129, 313, 445, 648, 682, 745
BmiI GGNNCC 5 cut(s) 315, 387, 417, 447, 684
BmrFI CCNGG 6 cut(s) 127, 362, 404, 434, 686, 749
BmsI GCATC 2 cut(s) 526, 532
BoxI GACNNNNGTC 1 cut(s) 943
BpiI GAAGAC 3 cut(s) 261, 471, 1274
Bpu10I CCTNAGC 2 cut(s) 602, 678
BpuMI CCSGG 1 cut(s) 686
BsaAI YACGTR 1 cut(s) 724
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 5 cut(s) 360, 402, 432, 554, 658
BsaWI WCCGGW 2 cut(s) 633, 645
BsaXI ACNNNNNCTCC 6 cut(s) 171, 201, 760, 790, 813, 843
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 818, 901
Bse1I ACTGG 3 cut(s) 778, 895, 945
Bse3DI GCAATG 2 cut(s) 714, 1081
BseBI CCWGG 5 cut(s) 127, 362, 404, 434, 749
BseDI CCNNGG 5 cut(s) 360, 402, 432, 554, 658
BseGI GGATG 1 cut(s) 967
BseLI CCNNNNNNNGG 3 cut(s) 70, 818, 901
BseMI GCAATG 2 cut(s) 714, 1081
BseMII CTCAG 5 cut(s) 39, 476, 552, 593, 692
BseNI ACTGG 3 cut(s) 778, 895, 945
BseRI GAGGAG 3 cut(s) 179, 543, 781
BseXI GCAGC 1 cut(s) 941
BshFI GGCC 3 cut(s) 74, 559, 1184
BsiHKAI GWGCWC 2 cut(s) 522, 657
BsiSI CCGG 4 cut(s) 505, 634, 646, 686
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 3 cut(s) 70, 818, 901
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 3 cut(s) 74, 559, 1184
Bsp1286I GDGCHC 3 cut(s) 390, 522, 657
Bsp143I GATC 7 cut(s) 42, 343, 415, 507, 642, 973, 1051
Bsp19I CCATGG 1 cut(s) 658
BspACI CCGC 5 cut(s) 14, 29, 1021, 1223, 1226
BspANI GGCC 3 cut(s) 74, 559, 1184
BspCNI CTCAG 5 cut(s) 38, 475, 553, 594, 691
BspHI TCATGA 2 cut(s) 532, 1068
BspLI GGNNCC 5 cut(s) 315, 387, 417, 447, 684
BspPI GGATC 6 cut(s) 351, 410, 423, 515, 637, 981
BsrBI CCGCTC 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 714, 1081
BsrI ACTGG 3 cut(s) 778, 895, 945
BssECI CCNNGG 5 cut(s) 360, 402, 432, 554, 658
BssMI GATC 7 cut(s) 42, 343, 415, 507, 642, 973, 1051
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 5 cut(s) 127, 362, 404, 434, 749
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 724
BstC8I GCNNGC 3 cut(s) 675, 1005, 1047
BstDEI CTNAG 7 cut(s) 25, 462, 561, 602, 678, 1215, 1288
BstDSI CCRYGG 1 cut(s) 658
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 967
BstKTI GATC 7 cut(s) 45, 346, 418, 510, 645, 976, 1054
BstMBI GATC 7 cut(s) 42, 343, 415, 507, 642, 973, 1051
BstMWI GCNNNNNNNGC 3 cut(s) 11, 556, 1029
BstNI CCWGG 5 cut(s) 127, 362, 404, 434, 749
BstPAI GACNNNNGTC 1 cut(s) 943
BstSCI CCNGG 6 cut(s) 125, 360, 402, 432, 684, 747
BstV1I GCAGC 1 cut(s) 941
BstV2I GAAGAC 3 cut(s) 261, 471, 1274
BstX2I RGATCY 2 cut(s) 415, 1051
BstXI CCANNNNNNTGG 1 cut(s) 850
BstYI RGATCY 2 cut(s) 415, 1051
BsuRI GGCC 3 cut(s) 74, 559, 1184
BtgI CCRYGG 1 cut(s) 658
BtsCI GGATG 1 cut(s) 967
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 2 cut(s) 517, 552
Cac8I GCNNGC 3 cut(s) 675, 1005, 1047
CciI TCATGA 2 cut(s) 532, 1068
Cfr13I GGNCC 6 cut(s) 129, 313, 445, 648, 682, 745
CpoI CGGWCCG 1 cut(s) 648
CsiI ACCWGGT 1 cut(s) 125
CspI CGGWCCG 1 cut(s) 648
CviAII CATG 4 cut(s) 533, 659, 958, 1069
DdeI CTNAG 7 cut(s) 25, 462, 561, 602, 678, 1215, 1288
DpnI GATC 7 cut(s) 44, 345, 417, 509, 644, 975, 1053
DpnII GATC 7 cut(s) 42, 343, 415, 507, 642, 973, 1051
DraI TTTAAA 1 cut(s) 1266
EaeI YGGCCR 1 cut(s) 1182
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Ecl136II GAGCTC 2 cut(s) 520, 655
Eco130I CCWWGG 1 cut(s) 658
Eco147I AGGCCT 1 cut(s) 74
Eco24I GRGCYC 3 cut(s) 390, 522, 657
Eco47I GGWCC 6 cut(s) 129, 313, 445, 648, 682, 745
Eco53kI GAGCTC 2 cut(s) 520, 655
EcoICRI GAGCTC 2 cut(s) 520, 655
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoO109I RGGNCCY 3 cut(s) 445, 682, 745
EcoRI GAATTC 1 cut(s) 950
EcoRII CCWGG 5 cut(s) 125, 360, 402, 432, 747
EcoT14I CCWWGG 1 cut(s) 658
EcoT38I GRGCYC 3 cut(s) 390, 522, 657
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 4 cut(s) 536, 662, 961, 1072
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 1 cut(s) 190
FatI CATG 4 cut(s) 532, 658, 957, 1068
FblI GTMKAC 2 cut(s) 428, 458
Fnu4HI GCNGC 4 cut(s) 30, 930, 1021, 1224
FokI GGATG 1 cut(s) 974
FriOI GRGCYC 3 cut(s) 390, 522, 657
Fsp4HI GCNGC 4 cut(s) 30, 930, 1021, 1224
FspBI CTAG 1 cut(s) 200
GluI GCNGC 4 cut(s) 30, 930, 1021, 1224
HaeIII GGCC 3 cut(s) 74, 559, 1184
HapII CCGG 4 cut(s) 505, 634, 646, 686
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 4 cut(s) 536, 662, 961, 1072
HincII GTYRAC 2 cut(s) 429, 459
HindII GTYRAC 2 cut(s) 429, 459
HindIII AAGCTT 1 cut(s) 1043
HpaII CCGG 4 cut(s) 505, 634, 646, 686
HphI GGTGA 4 cut(s) 115, 142, 749, 841
Hpy166II GTNNAC 2 cut(s) 429, 459
Hpy188I TCNGA 9 cut(s) 100, 133, 348, 420, 652, 949, 1056, 1062, 1111
Hpy188III TCNNGA 3 cut(s) 533, 680, 1069
Hpy8I GTNNAC 2 cut(s) 429, 459
Hpy99I CGWCG 3 cut(s) 83, 104, 277
HpyAV CCTTC 8 cut(s) 64, 85, 95, 231, 865, 1159, 1196, 1213
HpyCH4IV ACGT 2 cut(s) 102, 723
HpyCH4V TGCA 7 cut(s) 37, 539, 545, 707, 919, 992, 1049
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 556, 1029
HpyF3I CTNAG 7 cut(s) 25, 462, 561, 602, 678, 1215, 1288
HpySE526I ACGT 2 cut(s) 102, 723
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 4 cut(s) 536, 662, 961, 1072
Kzo9I GATC 7 cut(s) 42, 343, 415, 507, 642, 973, 1051
LmnI GCTCC 2 cut(s) 385, 660
Lsp1109I GCAGC 1 cut(s) 941
LweI GCATC 2 cut(s) 526, 532
MabI ACCWGGT 1 cut(s) 125
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 102, 723
MaeIII GTNAC 1 cut(s) 283
MalI GATC 7 cut(s) 44, 345, 417, 509, 644, 975, 1053
MbiI CCGCTC 1 cut(s) 14
MboI GATC 7 cut(s) 42, 343, 415, 507, 642, 973, 1051
MboII GAAGA 7 cut(s) 106, 216, 261, 471, 474, 477, 1274
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 2 cut(s) 415, 1051
MhlI GDGCHC 3 cut(s) 390, 522, 657
MlsI TGGCCA 1 cut(s) 1184
MluCI AATT 8 cut(s) 277, 349, 421, 451, 594, 950, 1112, 1230
MluNI TGGCCA 1 cut(s) 1184
MlyI GAGTC 6 cut(s) 212, 296, 368, 454, 485, 1178
MmeI TCCRAC 4 cut(s) 123, 156, 208, 768
Mox20I TGGCCA 1 cut(s) 1184
MroXI GAANNNNTTC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 1184
MseI TTAA 2 cut(s) 1151, 1265
MslI CAYNNNNRTG 1 cut(s) 859
Msp20I TGGCCA 1 cut(s) 1184
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 4 cut(s) 505, 634, 646, 686
MspR9I CCNGG 6 cut(s) 127, 362, 404, 434, 686, 749
MunI CAATTG 1 cut(s) 594
MvaI CCWGG 5 cut(s) 127, 362, 404, 434, 749
MwoI GCNNNNNNNGC 3 cut(s) 11, 556, 1029
NciI CCSGG 1 cut(s) 686
NcoI CCATGG 1 cut(s) 658
NdeII GATC 7 cut(s) 42, 343, 415, 507, 642, 973, 1051
NlaIII CATG 4 cut(s) 536, 662, 961, 1072
NlaIV GGNNCC 5 cut(s) 315, 387, 417, 447, 684
NmeAIII GCCGAG 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 283
PagI TCATGA 2 cut(s) 532, 1068
PceI AGGCCT 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 4 cut(s) 140, 590, 912, 1057
PkrI GCNGC 4 cut(s) 31, 931, 1022, 1225
PleI GAGTC 6 cut(s) 211, 296, 368, 454, 484, 1177
PpsI GAGTC 6 cut(s) 211, 296, 368, 454, 484, 1177
Ppu21I YACGTR 1 cut(s) 724
PpuMI RGGWCCY 3 cut(s) 445, 682, 745
PshAI GACNNNNGTC 1 cut(s) 943
Psp124BI GAGCTC 2 cut(s) 522, 657
Psp5II RGGWCCY 3 cut(s) 445, 682, 745
Psp6I CCWGG 5 cut(s) 125, 360, 402, 432, 747
PspGI CCWGG 5 cut(s) 125, 360, 402, 432, 747
PspN4I GGNNCC 5 cut(s) 315, 387, 417, 447, 684
PspPI GGNCC 6 cut(s) 129, 313, 445, 648, 682, 745
PspPPI RGGWCCY 3 cut(s) 445, 682, 745
PsuI RGATCY 2 cut(s) 415, 1051
RseI CAYNNNNRTG 1 cut(s) 859
Rsr2I CGGWCCG 1 cut(s) 648
RsrII CGGWCCG 1 cut(s) 648
SacI GAGCTC 2 cut(s) 522, 657
SalI GTCGAC 2 cut(s) 427, 457
SaqAI TTAA 2 cut(s) 1151, 1265
SatI GCNGC 4 cut(s) 30, 930, 1021, 1224
Sau3AI GATC 7 cut(s) 42, 343, 415, 507, 642, 973, 1051
Sau96I GGNCC 6 cut(s) 129, 313, 445, 648, 682, 745
SchI GAGTC 6 cut(s) 212, 296, 368, 454, 485, 1178
ScrFI CCNGG 6 cut(s) 127, 362, 404, 434, 686, 749
SduI GDGCHC 3 cut(s) 390, 522, 657
SexAI ACCWGGT 1 cut(s) 125
SfaNI GCATC 2 cut(s) 526, 532
SinI GGWCC 6 cut(s) 129, 313, 445, 648, 682, 745
SmiMI CAYNNNNRTG 1 cut(s) 859
Sse9I AATT 8 cut(s) 277, 349, 421, 451, 594, 950, 1112, 1230
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 5 cut(s) 14, 29, 1021, 1223, 1226
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 2 cut(s) 522, 657
StuI AGGCCT 1 cut(s) 74
StyD4I CCNGG 6 cut(s) 125, 360, 402, 432, 684, 747
StyI CCWWGG 1 cut(s) 658
TaiI ACGT 2 cut(s) 105, 726
TaqI TCGA 6 cut(s) 45, 78, 138, 275, 428, 458
TasI AATT 8 cut(s) 277, 349, 421, 451, 594, 950, 1112, 1230
TauI GCSGC 3 cut(s) 32, 1023, 1226
TfiI GAWTC 4 cut(s) 140, 590, 912, 1057
Tru1I TTAA 2 cut(s) 1151, 1265
Tru9I TTAA 2 cut(s) 1151, 1265
TscAI CASTG 2 cut(s) 517, 552
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 929
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 477, 629, 1093
TspRI CASTG 2 cut(s) 517, 552
VpaK11BI GGWCC 6 cut(s) 129, 313, 445, 648, 682, 745
XagI CCTNNNNNAGG 1 cut(s) 68
XapI RAATTY 6 cut(s) 277, 349, 421, 451, 950, 1112
XmiI GTMKAC 2 cut(s) 428, 458
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 1 cut(s) 200
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.