MD11G1205100.v1.1

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013187
Physical Location & Seq
Reverse (-)
29921836 .. 29924825
2990 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1205100.v1.1.491

Sequence Viewer

Length: 1728 bp
ATGGCGACGACGACTGCGGAAACAATCTCAGCGGCCATGGAACTGATTGACACGAAGAAACAGAACCTAAAGAAGGCCTTCGACGAGCTCCAATCCCACTCCGCCGTCCTCTCCTCCTTCAATCTCTCTTGGTCCGACCTCGATTCCCACTTCACCTCCATCCAAACCTCCCTCACCCAAAAATTCCACCTCCTCCAATCCCTCCAGTCACAGTCCTCCACAAACCCTTCTTCTCCTTCATGTCAGATACCACAAGACCCCTCTCCTTCGTCGAATTTACCGACCCAGGTAGCAAAAGACCCGTCTTTGCCGTCGCTCGGGTCGACCCAGATGGCGGAAGACCCCAAATCATCGATCCAGATGCCAAAGTACCTGCCTTGTTCGTCAATTTTGTCGACCCAGATTGCAAAAGACCCTTCTTCCTCATCAAACCCCCCGAGCCAGAACGTGGTTGAAACAGATATCAATTGTGAAGTGGATGTTGTGCCTCCTCGGCCCGAATTGGTGGCGTTCTGTGAGAGAATGGATGCGATGGGGTTGAGGAATTATATGAATGAGTCGGTGAATAACCGAAACACAATTCGGGGTGAGCTCCTGGAGGCAATTCGGTGTGCCAAGGACCCTGCTGCCATGGTTCTGAATGCAATGGAGGGGTTCTATTGCGCAAATGGGAGAAATAAGGGCGATAAGGACCCACAATTATTTGGTGTGAGGAGGAGTGCTGTGCTGTTGTTGGAAGTGTTAATGGGAATTTCTCCGAATGTAGGATCGGAAGTGAGGGAGAGAGCCAAGAAGTTAGCATTAGAGTGGAAAGGGAAGTTGAGTATGGATGGCGAAAACCCGTTCGAGGCGTTGGGATTCTTGCATTTGGTTGCAGCTTATGGACTGCAGGCCGAATTCAAGACGGATGAGCTTGTTGATCATTTTGTTATAGTTGCGCGGTATAGGCAAGCTGTTGAGTTATGCCGGAAAATTGGTTTGGGGGATAAGCTTCCAGATCTGATTCAGAAACTTGTGAGTAAGGGAAAACATCTTTTGGCTGTCAAATTCATTTCTGAATTTGGTCTGACCAATAAGTTCCCACCAGTTCCCATCTTAAAATCCTACATCAAAGAGTCCAAAAAGCTTGCTAAGAAAGTATGCAAGGATGGAACTCGCCAGTCAATGAATGAAGCCACAGCGAAAGAATCCGGTGCTTTGAAATCAGTAATCAAGGTTATTGAAGACCTCAAGCTCGAATCTGAGTATCCACCTGCTTTTCTTCAAAAGCGTCTGGAGCAGCTGGAGAAGGAGAAGGCAGACAGTAAACGCAATGCTGTGGCTTCTGCTGCCAAGCCTCTGCAACTGCGGCAGCAACAGAAACAGCAGACAGTAAAGGAGCCGGCAAAGAAACTGAAGCAGCAGCTGTATGGAAACAAGCGTCCTAGAATGACCGCTCCAGATGGATCTGCAGCAGTCTCAATTAATGTTAATGACGCAGGTTTGTTGCGAGCCTATTCCTTGTCTGGCATTGCTCCTGCTCCTCCAGCTGCCACTTATGCGGGTTCATCAGCTGGGCTGTATGGTTTTTCAGGAGGCCAGATGGGTTTTCCTGGGCATCCAGCCCCTACTAGTACCCACTTATCCTTGTCTGAACAGTATGTTCCGTCAGGTTATTATAACCAGCCAACTACCTATGGTGGATATGGTGCACCCCCCAAATATCATCCATCTTACTACCCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

576

Amino Acids

62.8

Weight (kDa)

9.0

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 163 - 439 2.3e-98 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31814 AT5G16320
fragaria_vesca FvH4_3g24000
malus_domestica MD11G1205100.v1.1
prunus_persica Prupe.4G232500_v2.0.a1
pyrus_communis pycom11g17780
rosa_chinensis RchiOBHm_Chr5g0042571
rosa_laevigata RLG00000034141
rosa_multiflora Rmu_sc0004704.1_g000003
rosa_roxburghii Rroxscaffold_1G00038070
rosa_rugosa Rorug05G0202600 Rorug05G0202700 Rorug05G0202800
rosa_samantha Rh5AG287800 Rh5BG292200 Rh5CG324600 Rh5DG302000
rosa_wichuraiana Rw5G026720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1659
AarI CACCTGC 1 cut(s) 1261
Acc16I TGCGCA 1 cut(s) 664
Acc36I ACCTGC 3 cut(s) 381, 1261, 1469
AccB7I CCANNNNNTGG 1 cut(s) 448
AccBSI CCGCTC 1 cut(s) 1436
AccI GTMKAC 2 cut(s) 323, 395
AccII CGCG 1 cut(s) 940
AciI CCGC 8 cut(s) 17, 32, 102, 335, 940, 1348, 1434, 1541
AclWI GGATC 3 cut(s) 349, 775, 1453
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 6 cut(s) 182, 274, 750, 896, 1046, 1058
AcuI CTGAAG 1 cut(s) 1415
AfaI GTAC 2 cut(s) 371, 1615
AfiI CCNNNNNNNGG 6 cut(s) 73, 317, 334, 448, 764, 847
AgsI TTSAA 6 cut(s) 121, 455, 901, 1201, 1223, 1265
AhlI ACTAGT 1 cut(s) 1610
AjnI CCWGG 3 cut(s) 285, 594, 1591
AjuI GAANNNNNNNTTGG 2 cut(s) 962, 994
Alw21I GWGCWC 3 cut(s) 90, 594, 1693
Alw26I GTCTC 1 cut(s) 1462
Alw44I GTGCAC 1 cut(s) 1689
AlwI GGATC 3 cut(s) 349, 775, 1453
AlwNI CAGNNNCTG 1 cut(s) 1405
Ama87I CYCGRG 2 cut(s) 317, 436
AoxI GGCC 5 cut(s) 33, 75, 494, 891, 1576
ApaLI GTGCAC 1 cut(s) 1689
ApeKI GCWGC 9 cut(s) 626, 875, 1279, 1328, 1351, 1399, 1402, 1451, 1529
ApoI RAATTY 6 cut(s) 182, 274, 750, 896, 1046, 1058
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AseI ATTAAT 1 cut(s) 1464
Asp700I GAANNNNTTC 1 cut(s) 77
AspLEI GCGC 2 cut(s) 665, 940
AspS9I GGNCC 4 cut(s) 132, 495, 619, 691
AsuHPI GGTGA 4 cut(s) 145, 166, 574, 599
AvaI CYCGRG 2 cut(s) 317, 436
AvaII GGWCC 3 cut(s) 132, 619, 691
BaeGI GKGCMC 1 cut(s) 1693
BanII GRGCYC 2 cut(s) 90, 594
BbsI GAAGAC 2 cut(s) 345, 1230
Bbv12I GWGCWC 3 cut(s) 90, 594, 1693
BbvI GCAGC 9 cut(s) 613, 887, 1291, 1315, 1363, 1411, 1414, 1463, 1516
BccI CCATC 9 cut(s) 167, 325, 526, 824, 1100, 1142, 1436, 1576, 1717
BceAI ACGGC 2 cut(s) 89, 295
BcgI CGANNNNNNTGC 2 cut(s) 343, 377
BciT130I CCWGG 3 cut(s) 287, 596, 1593
BciVI GTATCC 1 cut(s) 1257
BclI TGATCA 1 cut(s) 919
BcoDI GTCTC 1 cut(s) 1462
BcuI ACTAGT 1 cut(s) 1610
BfaI CTAG 2 cut(s) 1425, 1611
BfmI CTRYAG 2 cut(s) 887, 1449
BfuAI ACCTGC 3 cut(s) 381, 1261, 1469
BfuI GTATCC 1 cut(s) 1257
BglI GCCNNNNNGGC 1 cut(s) 493
BglII AGATCT 1 cut(s) 997
Bme1390I CCNGG 3 cut(s) 287, 596, 1593
Bme18I GGWCC 3 cut(s) 132, 619, 691
BmeT110I CYCGRG 2 cut(s) 317, 436
BmgT120I GGNCC 4 cut(s) 132, 495, 619, 691
BmiI GGNNCC 3 cut(s) 621, 693, 1380
BmrFI CCNGG 3 cut(s) 287, 596, 1593
BmsI GCATC 3 cut(s) 351, 517, 1606
BpiI GAAGAC 2 cut(s) 345, 1230
BpmI CTGGAG 6 cut(s) 188, 617, 1295, 1304, 1422, 1509
BpuEI CTTGAG 1 cut(s) 1214
Bsa29I ATCGAT 1 cut(s) 353
BsaJI CCNNGG 6 cut(s) 36, 285, 491, 615, 630, 1592
BsaWI WCCGGW 1 cut(s) 1190
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 6 cut(s) 73, 317, 334, 448, 764, 847
Bse118I RCCGGY 1 cut(s) 1381
Bse1I ACTGG 3 cut(s) 205, 1085, 1159
Bse3DI GCAATG 3 cut(s) 651, 1318, 1509
BseBI CCWGG 3 cut(s) 287, 596, 1593
BseCI ATCGAT 1 cut(s) 353
BseDI CCNNGG 6 cut(s) 36, 285, 491, 615, 630, 1592
BseGI GGATG 8 cut(s) 159, 484, 532, 835, 913, 1153, 1597, 1705
BseLI CCNNNNNNNGG 6 cut(s) 73, 317, 334, 448, 764, 847
BseMI GCAATG 3 cut(s) 651, 1318, 1509
BseMII CTCAG 2 cut(s) 42, 1233
BseNI ACTGG 3 cut(s) 205, 1085, 1159
BseRI GAGGAG 6 cut(s) 103, 182, 480, 727, 730, 1512
BseSI GKGCMC 1 cut(s) 1693
BseXI GCAGC 9 cut(s) 613, 887, 1291, 1315, 1363, 1411, 1414, 1463, 1516
BseYI CCCAGC 1 cut(s) 1553
Bsh1236I CGCG 1 cut(s) 940
BshFI GGCC 5 cut(s) 35, 77, 496, 893, 1578
BshVI ATCGAT 1 cut(s) 353
BsiHKAI GWGCWC 3 cut(s) 90, 594, 1693
BsiHKCI CYCGRG 2 cut(s) 317, 436
BsiSI CCGG 3 cut(s) 967, 1191, 1382
BslI CCNNNNNNNGG 6 cut(s) 73, 317, 334, 448, 764, 847
BsmAI GTCTC 1 cut(s) 1462
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 5 cut(s) 35, 77, 496, 893, 1578
BsoBI CYCGRG 2 cut(s) 317, 436
Bsp1286I GDGCHC 3 cut(s) 90, 594, 1693
Bsp143I GATC 5 cut(s) 354, 767, 919, 997, 1445
Bsp19I CCATGG 2 cut(s) 36, 630
BspACI CCGC 8 cut(s) 17, 32, 102, 335, 940, 1348, 1434, 1541
BspANI GGCC 5 cut(s) 35, 77, 496, 893, 1578
BspCNI CTCAG 2 cut(s) 41, 1234
BspDI ATCGAT 1 cut(s) 353
BspFNI CGCG 1 cut(s) 940
BspLI GGNNCC 3 cut(s) 621, 693, 1380
BspMAI CTGCAG 2 cut(s) 891, 1453
BspMI ACCTGC 3 cut(s) 381, 1261, 1469
BspPI GGATC 3 cut(s) 349, 775, 1453
BsrBI CCGCTC 1 cut(s) 1436
BsrDI GCAATG 3 cut(s) 651, 1318, 1509
BsrFI RCCGGY 1 cut(s) 1381
BsrI ACTGG 3 cut(s) 205, 1085, 1159
BssAI RCCGGY 1 cut(s) 1381
BssECI CCNNGG 6 cut(s) 36, 285, 491, 615, 630, 1592
BssMI GATC 5 cut(s) 354, 767, 919, 997, 1445
BssT1I CCWWGG 3 cut(s) 36, 615, 630
Bst2UI CCWGG 3 cut(s) 287, 596, 1593
Bst4CI ACNGT 4 cut(s) 213, 1304, 1372, 1638
BstC8I GCNNGC 5 cut(s) 891, 951, 1128, 1383, 1491
BstDEI CTNAG 4 cut(s) 28, 1131, 1242, 1722
BstDSI CCRYGG 2 cut(s) 36, 630
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 8 cut(s) 159, 484, 532, 835, 913, 1153, 1597, 1705
BstFNI CGCG 1 cut(s) 940
BstHHI GCGC 2 cut(s) 665, 940
BstKTI GATC 5 cut(s) 357, 770, 922, 1000, 1448
BstMAI GTCTC 1 cut(s) 1462
BstMBI GATC 5 cut(s) 354, 767, 919, 997, 1445
BstMWI GCNNNNNNNGC 7 cut(s) 493, 946, 1276, 1328, 1348, 1526, 1538
BstNI CCWGG 3 cut(s) 287, 596, 1593
BstSCI CCNGG 3 cut(s) 285, 594, 1591
BstSFI CTRYAG 2 cut(s) 887, 1449
BstSLI GKGCMC 1 cut(s) 1693
BstUI CGCG 1 cut(s) 940
BstV1I GCAGC 9 cut(s) 613, 887, 1291, 1315, 1363, 1411, 1414, 1463, 1516
BstV2I GAAGAC 2 cut(s) 345, 1230
BstX2I RGATCY 2 cut(s) 997, 1445
BstYI RGATCY 2 cut(s) 997, 1445
Bsu15I ATCGAT 1 cut(s) 353
BsuI GTATCC 1 cut(s) 1257
BsuRI GGCC 5 cut(s) 35, 77, 496, 893, 1578
BsuTUI ATCGAT 1 cut(s) 353
BtgI CCRYGG 2 cut(s) 36, 630
BtgZI GCGATG 1 cut(s) 545
BtsCI GGATG 8 cut(s) 159, 484, 532, 835, 913, 1153, 1597, 1705
BveI ACCTGC 3 cut(s) 381, 1261, 1469
Cac8I GCNNGC 5 cut(s) 891, 951, 1128, 1383, 1491
CaiI CAGNNNCTG 1 cut(s) 1405
CfoI GCGC 2 cut(s) 665, 940
Cfr10I RCCGGY 1 cut(s) 1381
Cfr13I GGNCC 4 cut(s) 132, 495, 619, 691
ClaI ATCGAT 1 cut(s) 353
CseI GACGC 3 cut(s) 1259, 1409, 1484
Csp6I GTAC 2 cut(s) 370, 1614
CviAII CATG 3 cut(s) 37, 240, 631
CviQI GTAC 2 cut(s) 370, 1614
DdeI CTNAG 4 cut(s) 28, 1131, 1242, 1722
DpnI GATC 5 cut(s) 356, 769, 921, 999, 1447
DpnII GATC 5 cut(s) 354, 767, 919, 997, 1445
EaeI YGGCCR 1 cut(s) 33
EciI GGCGGA 2 cut(s) 91, 350
Ecl136II GAGCTC 2 cut(s) 88, 592
Eco130I CCWWGG 3 cut(s) 36, 615, 630
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 2 cut(s) 90, 594
Eco32I GATATC 1 cut(s) 463
Eco47I GGWCC 3 cut(s) 132, 619, 691
Eco53kI GAGCTC 2 cut(s) 88, 592
Eco57I CTGAAG 1 cut(s) 1415
Eco88I CYCGRG 2 cut(s) 317, 436
EcoICRI GAGCTC 2 cut(s) 88, 592
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO109I RGGNCCY 2 cut(s) 619, 691
EcoRI GAATTC 1 cut(s) 896
EcoRII CCWGG 3 cut(s) 285, 594, 1591
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 3 cut(s) 36, 615, 630
EcoT38I GRGCYC 2 cut(s) 90, 594
ErhI CCWWGG 3 cut(s) 36, 615, 630
FaeI CATG 3 cut(s) 40, 243, 634
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 3 cut(s) 36, 239, 630
FauI CCCGC 1 cut(s) 1534
FbaI TGATCA 1 cut(s) 919
FblI GTMKAC 2 cut(s) 323, 395
FokI GGATG 8 cut(s) 146, 491, 539, 842, 920, 1160, 1584, 1692
FriOI GRGCYC 2 cut(s) 90, 594
FspBI CTAG 2 cut(s) 1425, 1611
FspI TGCGCA 1 cut(s) 664
GlaI GCGC 2 cut(s) 664, 939
GsaI CCCAGC 1 cut(s) 1557
GsuI CTGGAG 6 cut(s) 188, 617, 1295, 1304, 1422, 1509
HaeIII GGCC 5 cut(s) 35, 77, 496, 893, 1578
HapII CCGG 3 cut(s) 967, 1191, 1382
HgaI GACGC 3 cut(s) 1259, 1409, 1484
HhaI GCGC 2 cut(s) 665, 940
Hin1II CATG 3 cut(s) 40, 243, 634
Hin6I GCGC 2 cut(s) 663, 938
HinP1I GCGC 2 cut(s) 663, 938
HincII GTYRAC 2 cut(s) 324, 396
HindII GTYRAC 2 cut(s) 324, 396
HindIII AAGCTT 2 cut(s) 989, 1124
HinfI GANTC 7 cut(s) 143, 557, 858, 1003, 1115, 1187, 1238
HpaII CCGG 3 cut(s) 967, 1191, 1382
HphI GGTGA 4 cut(s) 145, 166, 574, 599
Hpy166II GTNNAC 4 cut(s) 324, 396, 1307, 1691
Hpy188III TCNNGA 6 cut(s) 358, 901, 995, 1274, 1439, 1572
Hpy8I GTNNAC 4 cut(s) 324, 396, 1307, 1691
Hpy99I CGWCG 5 cut(s) 10, 13, 86, 274, 316
HpyAV CCTTC 9 cut(s) 67, 88, 127, 237, 246, 276, 426, 1282, 1288
HpyCH4III ACNGT 4 cut(s) 213, 1304, 1372, 1638
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 9 cut(s) 407, 644, 865, 875, 889, 1143, 1342, 1451, 1691
HpyF10VI GCNNNNNNNGC 7 cut(s) 493, 946, 1276, 1328, 1348, 1526, 1538
HpyF3I CTNAG 4 cut(s) 28, 1131, 1242, 1722
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 3 cut(s) 40, 243, 634
HspAI GCGC 2 cut(s) 663, 938
KroI GCCGGC 1 cut(s) 1381
KroNI GCCGGC 1 cut(s) 1383
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 5 cut(s) 354, 767, 919, 997, 1445
LmnI GCTCC 7 cut(s) 93, 597, 1276, 1378, 1441, 1519, 1525
Lsp1109I GCAGC 9 cut(s) 613, 887, 1291, 1315, 1363, 1411, 1414, 1463, 1516
LweI GCATC 3 cut(s) 351, 517, 1606
MaeI CTAG 2 cut(s) 1425, 1611
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 207
MalI GATC 5 cut(s) 356, 769, 921, 999, 1447
MbiI CCGCTC 1 cut(s) 1436
MboI GATC 5 cut(s) 354, 767, 919, 997, 1445
MboII GAAGA 6 cut(s) 67, 222, 350, 411, 1235, 1253
MfeI CAATTG 1 cut(s) 466
MflI RGATCY 2 cut(s) 997, 1445
MhlI GDGCHC 3 cut(s) 90, 594, 1693
MlyI GAGTC 2 cut(s) 566, 1124
MmeI TCCRAC 2 cut(s) 159, 714
MroNI GCCGGC 1 cut(s) 1381
MroXI GAANNNNTTC 1 cut(s) 77
MseI TTAA 4 cut(s) 743, 1097, 1464, 1470
MslI CAYNNNNRTG 1 cut(s) 805
MspA1I CMGCKG 5 cut(s) 32, 1282, 1405, 1529, 1553
MspI CCGG 3 cut(s) 967, 1191, 1382
MspR9I CCNGG 3 cut(s) 287, 596, 1593
MunI CAATTG 1 cut(s) 466
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 3 cut(s) 287, 596, 1593
MvnI CGCG 1 cut(s) 940
MwoI GCNNNNNNNGC 7 cut(s) 493, 946, 1276, 1328, 1348, 1526, 1538
NaeI GCCGGC 1 cut(s) 1383
NcoI CCATGG 2 cut(s) 36, 630
NdeII GATC 5 cut(s) 354, 767, 919, 997, 1445
NgoMIV GCCGGC 1 cut(s) 1381
NlaIII CATG 3 cut(s) 40, 243, 634
NlaIV GGNNCC 3 cut(s) 621, 693, 1380
NmeAIII GCCGAG 1 cut(s) 472
NmuCI GTSAC 1 cut(s) 207
NsbI TGCGCA 1 cut(s) 664
PaqCI CACCTGC 1 cut(s) 1261
PceI AGGCCT 1 cut(s) 77
PcsI WCGNNNNNNNCGW 2 cut(s) 278, 320
PctI GAATGC 1 cut(s) 646
PdiI GCCGGC 1 cut(s) 1383
PdmI GAANNNNTTC 1 cut(s) 77
PfeI GAWTC 5 cut(s) 143, 858, 1003, 1187, 1238
PflMI CCANNNNNTGG 1 cut(s) 448
PfoI TCCNGGA 1 cut(s) 594
PleI GAGTC 2 cut(s) 565, 1123
PpsI GAGTC 2 cut(s) 565, 1123
PpuMI RGGWCCY 2 cut(s) 619, 691
PshBI ATTAAT 1 cut(s) 1464
PsiI TTATAA 1 cut(s) 1659
Psp124BI GAGCTC 2 cut(s) 90, 594
Psp5II RGGWCCY 2 cut(s) 619, 691
Psp6I CCWGG 3 cut(s) 285, 594, 1591
PspFI CCCAGC 1 cut(s) 1553
PspGI CCWGG 3 cut(s) 285, 594, 1591
PspN4I GGNNCC 3 cut(s) 621, 693, 1380
PspPI GGNCC 4 cut(s) 132, 495, 619, 691
PspPPI RGGWCCY 2 cut(s) 619, 691
PstI CTGCAG 2 cut(s) 891, 1453
PstNI CAGNNNCTG 1 cut(s) 1405
PsuI RGATCY 2 cut(s) 997, 1445
PvuII CAGCTG 4 cut(s) 1282, 1405, 1529, 1553
RsaI GTAC 2 cut(s) 371, 1615
RsaNI GTAC 2 cut(s) 370, 1614
RseI CAYNNNNRTG 1 cut(s) 805
SacI GAGCTC 2 cut(s) 90, 594
SalI GTCGAC 2 cut(s) 322, 394
SaqAI TTAA 4 cut(s) 743, 1097, 1464, 1470
Sau3AI GATC 5 cut(s) 354, 767, 919, 997, 1445
Sau96I GGNCC 4 cut(s) 132, 495, 619, 691
SchI GAGTC 2 cut(s) 566, 1124
ScrFI CCNGG 3 cut(s) 287, 596, 1593
SduI GDGCHC 3 cut(s) 90, 594, 1693
SfaNI GCATC 3 cut(s) 351, 517, 1606
SfcI CTRYAG 2 cut(s) 887, 1449
SinI GGWCC 3 cut(s) 132, 619, 691
SmiMI CAYNNNNRTG 1 cut(s) 805
SmlI CTYRAG 1 cut(s) 1229
SmoI CTYRAG 1 cut(s) 1229
SpeI ACTAGT 1 cut(s) 1610
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 8 cut(s) 17, 32, 102, 335, 940, 1348, 1434, 1541
SspMI CTAG 2 cut(s) 1425, 1611
SstI GAGCTC 2 cut(s) 90, 594
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 3 cut(s) 285, 594, 1591
StyI CCWWGG 3 cut(s) 36, 615, 630
TaaI ACNGT 4 cut(s) 213, 1304, 1372, 1638
TaiI ACGT 1 cut(s) 450
TaqI TCGA 8 cut(s) 81, 141, 272, 323, 353, 395, 846, 1236
TauI GCSGC 2 cut(s) 35, 1351
TfiI GAWTC 5 cut(s) 143, 858, 1003, 1187, 1238
Tru1I TTAA 4 cut(s) 743, 1097, 1464, 1470
Tru9I TTAA 4 cut(s) 743, 1097, 1464, 1470
TseFI GTSAC 1 cut(s) 207
TseI GCWGC 9 cut(s) 626, 875, 1279, 1328, 1351, 1399, 1402, 1451, 1529
Tsp45I GTSAC 1 cut(s) 207
TspDTI ATGAA 6 cut(s) 228, 566, 1039, 1181, 1185, 1536
TspGWI ACGGA 2 cut(s) 920, 1635
Van91I CCANNNNNTGG 1 cut(s) 448
VneI GTGCAC 1 cut(s) 1689
VpaK11BI GGWCC 3 cut(s) 132, 619, 691
VspI ATTAAT 1 cut(s) 1464
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 6 cut(s) 182, 274, 750, 896, 1046, 1058
XmiI GTMKAC 2 cut(s) 323, 395
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 2 cut(s) 1425, 1611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.