AT1G32127

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008026
Physical Location & Seq
Forward (+)
11556744 .. 11558702
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32127.1

Sequence Viewer

Length: 795 bp
ATGGGTTCTTTCAAGGGTCATGCTTTGCCTGGTACATTGTTCTTGGTAGTTGGAGTATGGCACATTTGGAGCTCAGTTGTTAGATACATATCGAATCCTAGTTCATTTCGGGTTAGAGTTTGGCATCCTGTTCCTGGTTTCAATGATAGGATCAAGTACTTGGAGCTTTACGTTGTTACTATTGGCTCGTTCATTGACTTGTGCATTGAGTTCTTGTATTCAACTCATCTCAAGTTCTTTGTTAATGGTGTTTTGAATCCTTCCCATATGAATGACTTTGAGCACTCTGGGATGCTTCTCATGTTCTTCATCCTCGGATTTATCGCTTTGCTCTCCGAGAAAACAAGGTTACTTCCTCTGCCACAAGAAGCTCTGTGTCTAATCGCTGCAACAGCTTTTACGGCAGAGTGTCTTCTCTTCTTCTTCCACTCCACAAGCCACAAAGGTCTTGAAGGTTATTACCATCTCCTCCTCGTCTTTCTCATCGGTCTCTGCGTCATCTCCTCAATCGCTGGAGCAATCTGCCCTACAAGCTTCCCAGTAGATCTATGCAATGGCATTGCAATGACTCTTCAAGGCCTCTGGTTTTATCAGACAGCTTTCACTCTGTATGGCCCTATGATGCCTCAAGGCTGCAGTTTAAAACAAAACTCTGTAGTTTGCAGATCAGTTGATTCAGAAGTCTCAGGAGAGTTTCTGGCTAATTTTCAGCTCTTTTCATTGGTTCTTGCTGTTCTTGTTTGCGTTGTGGGTTCATATGTTTTTGCAGCTTCAAGATTTGGAGTAAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF716 PMD

Protein Analysis

264

Amino Acids

29.34

Weight (kDa)

7.09

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF716 PF04819 123 - 254 5.7e-42 Family of unknown function (DUF716)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 158
AfaI GTAC 2 cut(s) 34, 158
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 7 cut(s) 13, 142, 222, 256, 452, 575, 774
AjnI CCWGG 2 cut(s) 28, 133
AluBI AGCT 8 cut(s) 72, 166, 371, 395, 534, 599, 712, 770
AluI AGCT 8 cut(s) 72, 166, 371, 395, 534, 599, 712, 770
Alw21I GWGCWC 2 cut(s) 74, 285
Alw26I GTCTC 2 cut(s) 494, 688
AlwI GGATC 1 cut(s) 158
AoxI GGCC 2 cut(s) 577, 613
ApeKI GCWGC 3 cut(s) 386, 633, 767
AspS9I GGNCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 2 cut(s) 74, 285
BbvI GCAGC 3 cut(s) 373, 620, 779
BccI CCATC 1 cut(s) 471
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 2 cut(s) 30, 135
BcoDI GTCTC 2 cut(s) 494, 688
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 2 cut(s) 634, 654
BglII AGATCT 1 cut(s) 544
BisI GCNGC 3 cut(s) 387, 634, 768
BlsI GCNGC 3 cut(s) 388, 635, 769
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 30, 135
BmgT120I GGNCC 1 cut(s) 614
BmrFI CCNGG 2 cut(s) 30, 135
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 3 cut(s) 133, 282, 612
BmuI ACTGGG 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 534
BpuEI CTTGAG 2 cut(s) 215, 612
BsaBI GATNNNNATC 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 539
Bse3DI GCAATG 3 cut(s) 558, 559, 570
Bse8I GATNNNNATC 1 cut(s) 88
BseBI CCWGG 2 cut(s) 30, 135
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 3 cut(s) 124, 297, 309
BseJI GATNNNNATC 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 3 cut(s) 558, 559, 570
BseMII CTCAG 2 cut(s) 87, 699
BseNI ACTGG 1 cut(s) 539
BseRI GAGGAG 3 cut(s) 458, 461, 493
BseXI GCAGC 3 cut(s) 373, 620, 779
BshFI GGCC 2 cut(s) 579, 615
BsiHKAI GWGCWC 2 cut(s) 74, 285
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 494, 688
BsnI GGCC 2 cut(s) 579, 615
Bso31I GGTCTC 1 cut(s) 494
Bsp1286I GDGCHC 2 cut(s) 74, 285
Bsp143I GATC 3 cut(s) 150, 544, 665
BspANI GGCC 2 cut(s) 579, 615
BspCNI CTCAG 2 cut(s) 86, 698
BspMAI CTGCAG 1 cut(s) 638
BspPI GGATC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 494
BsrDI GCAATG 3 cut(s) 558, 559, 570
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 3 cut(s) 150, 544, 665
Bst2UI CCWGG 2 cut(s) 30, 135
Bst6I CTCTTC 2 cut(s) 422, 576
BstDEI CTNAG 2 cut(s) 73, 685
BstF5I GGATG 3 cut(s) 124, 297, 309
BstKTI GATC 3 cut(s) 153, 547, 668
BstMAI GTCTC 2 cut(s) 494, 688
BstMBI GATC 3 cut(s) 150, 544, 665
BstMWI GCNNNNNNNGC 3 cut(s) 392, 401, 531
BstNI CCWGG 2 cut(s) 30, 135
BstSCI CCNGG 2 cut(s) 28, 133
BstSFI CTRYAG 2 cut(s) 634, 654
BstV1I GCAGC 3 cut(s) 373, 620, 779
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuRI GGCC 2 cut(s) 579, 615
BtsCI GGATG 3 cut(s) 124, 297, 309
Cfr13I GGNCC 1 cut(s) 614
CseI GACGC 1 cut(s) 484
Csp6I GTAC 2 cut(s) 33, 157
CviAII CATG 2 cut(s) 20, 301
CviQI GTAC 2 cut(s) 33, 157
DdeI CTNAG 2 cut(s) 73, 685
DpnI GATC 3 cut(s) 152, 546, 667
DpnII GATC 3 cut(s) 150, 544, 665
DraI TTTAAA 1 cut(s) 642
Eam1104I CTCTTC 2 cut(s) 422, 576
EarI CTCTTC 2 cut(s) 422, 576
Ecl136II GAGCTC 1 cut(s) 72
Eco147I AGGCCT 1 cut(s) 579
Eco24I GRGCYC 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 494
Eco53kI GAGCTC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 28, 133
EcoT38I GRGCYC 1 cut(s) 74
FaeI CATG 2 cut(s) 23, 304
FatI CATG 2 cut(s) 19, 300
FauNDI CATATG 2 cut(s) 267, 757
Fnu4HI GCNGC 3 cut(s) 387, 634, 768
FokI GGATG 3 cut(s) 111, 296, 304
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 3 cut(s) 387, 634, 768
FspBI CTAG 1 cut(s) 99
GluI GCNGC 3 cut(s) 387, 634, 768
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 2 cut(s) 579, 615
HgaI GACGC 1 cut(s) 484
Hin1II CATG 2 cut(s) 23, 304
HindIII AAGCTT 1 cut(s) 532
HinfI GANTC 4 cut(s) 94, 256, 568, 674
Hpy188I TCNGA 4 cut(s) 317, 337, 594, 679
Hpy188III TCNNGA 3 cut(s) 449, 687, 774
HpyAV CCTTC 2 cut(s) 270, 446
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 7 cut(s) 204, 389, 552, 563, 636, 663, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 401, 531
HpyF3I CTNAG 2 cut(s) 73, 685
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 2 cut(s) 23, 304
Kzo9I GATC 3 cut(s) 150, 544, 665
LmnI GCTCC 3 cut(s) 69, 163, 515
Lsp1109I GCAGC 3 cut(s) 373, 620, 779
LweI GCATC 3 cut(s) 133, 282, 612
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 175, 348
MalI GATC 3 cut(s) 152, 546, 667
MboI GATC 3 cut(s) 150, 544, 665
MboII GAAGA 6 cut(s) 298, 404, 409, 412, 415, 563
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 2 cut(s) 74, 285
MluCI AATT 1 cut(s) 703
MlyI GAGTC 1 cut(s) 562
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 7 cut(s) 323, 366, 479, 482, 514, 590, 636
MseI TTAA 2 cut(s) 243, 641
MslI CAYNNNNRTG 2 cut(s) 270, 563
MspR9I CCNGG 2 cut(s) 30, 135
MvaI CCWGG 2 cut(s) 30, 135
MwoI GCNNNNNNNGC 3 cut(s) 392, 401, 531
NdeI CATATG 2 cut(s) 267, 757
NdeII GATC 3 cut(s) 150, 544, 665
NlaIII CATG 2 cut(s) 23, 304
PceI AGGCCT 1 cut(s) 579
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PfeI GAWTC 3 cut(s) 94, 256, 674
PkrI GCNGC 3 cut(s) 388, 635, 769
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
Psp124BI GAGCTC 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 28, 133
PspGI CCWGG 2 cut(s) 28, 133
PspPI GGNCC 1 cut(s) 614
PstI CTGCAG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 2 cut(s) 34, 158
RsaNI GTAC 2 cut(s) 33, 157
RseI CAYNNNNRTG 2 cut(s) 270, 563
SacI GAGCTC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 243, 641
SatI GCNGC 3 cut(s) 387, 634, 768
Sau3AI GATC 3 cut(s) 150, 544, 665
Sau96I GGNCC 1 cut(s) 614
ScaI AGTACT 1 cut(s) 158
SchI GAGTC 1 cut(s) 562
ScrFI CCNGG 2 cut(s) 30, 135
SduI GDGCHC 2 cut(s) 74, 285
SfaNI GCATC 3 cut(s) 133, 282, 612
SfcI CTRYAG 2 cut(s) 634, 654
SmiMI CAYNNNNRTG 2 cut(s) 270, 563
SmlI CTYRAG 2 cut(s) 230, 627
SmoI CTYRAG 2 cut(s) 230, 627
Sse9I AATT 1 cut(s) 703
SseBI AGGCCT 1 cut(s) 579
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 1 cut(s) 74
StuI AGGCCT 1 cut(s) 579
StyD4I CCNGG 2 cut(s) 28, 133
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 92
TaqII GACCGA 1 cut(s) 476
TasI AATT 1 cut(s) 703
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 3 cut(s) 94, 256, 674
Tru1I TTAA 2 cut(s) 243, 641
Tru9I TTAA 2 cut(s) 243, 641
TseI GCWGC 3 cut(s) 386, 633, 767
TspDTI ATGAA 6 cut(s) 93, 181, 284, 298, 708, 744
XspI CTAG 1 cut(s) 99
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.