Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000084.1

Orthogroup ID

OG0008026

Physical Location & Seq

Genomic Coordinates Forward (+)

60703 .. 65127

Gene Structure 4425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000084.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgggttctttcaagggtcatgctgtgccagggacgttgtttcttgtagttgggttgtggcatatatggagcgcgttggtcagatatgcatccgaccccaaggcatttcgggtccgggtttggaatcctgtgccgggttttgatgggaggatcaagtacctggagctttatgttatagccgttggtgcttttattgatctgtgtatcgagcttttgtattcgccccatctcaagttctttgttaatggagttttgaaccctactcacatgaatgattttgagcactcggggatgcttcttatgttctttatcttcggtgtaattgctctgctctcacaggagacaagatttcttccattgcctgaaggagctctttgtctgattgctgccacggcattctctgcggagtatctcttgttctactttcactcaacaactcataaaggcctcgaggggtattaccacatcatccttgtccttctaattgggctctgtatattatcaactgttacaggagcgctcctaccaaccagctttccagttgatttatgcaatggtattgccttaactctccaaggcatctggttttatcagactgcattcaccctctatggtccgatgatgccagatggttgtcagttgaaggaaggaatgatctcatgtcattctgcagacaatgaggtccggggagagttacttgcaaacttccagttcttctccatagttcttggtgtacttgttgcagttgtgggagcatatggtttcattgcttcaagatttgggcattcagatcttacccgtttgcatgcagtacctgcattggttgacgatcaaatgaggggtttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

282

Amino Acids

31.22

Weight (kDa)

6.09

Isoelectric Point (pI)

27.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32127 AT1G32127
fragaria_vesca	FvH4_5g23820
malus_domestica	MD00G1000700.v1.1 MD06G1014200.v1.1
prunus_persica	Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1
pyrus_communis	pycom06g01120 pycom16g25410
rosa_chinensis	RchiOBHm_Chr7g0213211
rosa_laevigata	RLG00000002822
rosa_multiflora	Rmu_ssc0000084.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246170
rosa_rugosa	Rorug07G0140200 Rorug07G0140300
rosa_samantha	Rh7AG271900 Rh7BG267600 Rh7CG291200 Rh7DG280000
rosa_wichuraiana	Rw7G023600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	680
AbsI	CCTCGAGG	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	823
AccII	CGCG	1 cut(s)	74
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	3 cut(s)	158, 735, 813
AfeI	AGCGCT	1 cut(s)	519
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	13, 256, 643, 774
AjnI	CCWGG	2 cut(s)	28, 159
AluBI	AGCT	4 cut(s)	166, 211, 371, 534
AluI	AGCT	4 cut(s)	166, 211, 371, 534
Alw21I	GWGCWC	2 cut(s)	285, 373
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	815
Ama87I	CYCGRG	2 cut(s)	286, 449
Aor51HI	AGCGCT	1 cut(s)	519
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	386
AspLEI	GCGC	2 cut(s)	74, 520
AspS9I	GGNCC	3 cut(s)	112, 614, 682
AsuC2I	CCSGG	3 cut(s)	116, 135, 686
AsuHPI	GGTGA	1 cut(s)	595
AvaI	CYCGRG	2 cut(s)	286, 449
AvaII	GGWCC	3 cut(s)	112, 614, 682
BanII	GRGCYC	2 cut(s)	373, 492
Bbv12I	GWGCWC	2 cut(s)	285, 373
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	3 cut(s)	137, 234, 623
BceAI	ACGGC	2 cut(s)	164, 408
BciT130I	CCWGG	2 cut(s)	30, 161
BcnI	CCSGG	3 cut(s)	116, 135, 686
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	847
BfmI	CTRYAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	521
BfuAI	ACCTGC	1 cut(s)	823
BglII	AGATCT	1 cut(s)	790
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	5 cut(s)	30, 116, 135, 161, 686
Bme18I	GGWCC	3 cut(s)	112, 614, 682
BmeT110I	CYCGRG	2 cut(s)	286, 449
BmgT120I	GGNCC	3 cut(s)	112, 614, 682
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	5 cut(s)	30, 116, 135, 161, 686
BmsI	GCATC	4 cut(s)	98, 282, 588, 612
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	3 cut(s)	116, 135, 686
BsaBI	GATNNNNATC	1 cut(s)	88
BsaJI	CCNNGG	5 cut(s)	29, 99, 390, 574, 685
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	539, 709
Bse3DI	GCAATG	3 cut(s)	356, 559, 765
Bse8I	GATNNNNATC	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	30, 161
BseDI	CCNNGG	5 cut(s)	29, 99, 390, 574, 685
BseGI	GGATG	3 cut(s)	89, 297, 468
BseJI	GATNNNNATC	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	3 cut(s)	356, 559, 765
BseNI	ACTGG	2 cut(s)	539, 709
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	447
BsiHKAI	GWGCWC	2 cut(s)	285, 373
BsiHKCI	CYCGRG	2 cut(s)	286, 449
BsiSI	CCGG	3 cut(s)	115, 134, 685
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	3 cut(s)	395, 599, 784
BsnI	GGCC	1 cut(s)	447
BsoBI	CYCGRG	2 cut(s)	286, 449
Bsp1286I	GDGCHC	3 cut(s)	285, 373, 492
Bsp143I	GATC	5 cut(s)	150, 196, 654, 790, 829
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	447
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	673
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	1 cut(s)	158
BsrDI	GCAATG	3 cut(s)	356, 559, 765
BsrI	ACTGG	2 cut(s)	539, 709
BssECI	CCNNGG	5 cut(s)	29, 99, 390, 574, 685
BssMI	GATC	5 cut(s)	150, 196, 654, 790, 829
BssT1I	CCWWGG	2 cut(s)	99, 574
Bst2UI	CCWGG	2 cut(s)	30, 161
Bst4CI	ACNGT	1 cut(s)	508
BstAPI	GCANNNNNTGC	2 cut(s)	401, 815
BstC8I	GCNNGC	1 cut(s)	807
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	89, 297, 468
BstFNI	CGCG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	2 cut(s)	74, 520
BstKTI	GATC	5 cut(s)	153, 199, 657, 793, 832
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	5 cut(s)	150, 196, 654, 790, 829
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 392, 401, 815
BstNI	CCWGG	2 cut(s)	30, 161
BstNSI	RCATGY	1 cut(s)	809
BstSCI	CCNGG	5 cut(s)	28, 114, 133, 159, 684
BstSFI	CTRYAG	1 cut(s)	669
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	89, 297, 468
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	1 cut(s)	807
CaiI	CAGNNNCTG	1 cut(s)	815
CfoI	GCGC	2 cut(s)	74, 520
Cfr13I	GGNCC	3 cut(s)	112, 614, 682
Csp6I	GTAC	3 cut(s)	157, 734, 812
CviAII	CATG	4 cut(s)	20, 268, 660, 806
CviJI	RGCY	7 cut(s)	166, 179, 211, 371, 447, 490, 534
CviKI_1	RGCY	7 cut(s)	166, 179, 211, 371, 447, 490, 534
CviQI	GTAC	3 cut(s)	157, 734, 812
DpnI	GATC	5 cut(s)	152, 198, 656, 792, 831
DpnII	GATC	5 cut(s)	150, 196, 654, 790, 829
DrdI	GACNNNNNNGTC	1 cut(s)	680
DseDI	GACNNNNNNGTC	1 cut(s)	680
Ecl136II	GAGCTC	1 cut(s)	371
Eco130I	CCWWGG	2 cut(s)	99, 574
Eco147I	AGGCCT	1 cut(s)	447
Eco24I	GRGCYC	2 cut(s)	373, 492
Eco47I	GGWCC	3 cut(s)	112, 614, 682
Eco47III	AGCGCT	1 cut(s)	519
Eco53kI	GAGCTC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	384
Eco88I	CYCGRG	2 cut(s)	286, 449
EcoICRI	GAGCTC	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	28, 159
EcoT14I	CCWWGG	2 cut(s)	99, 574
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	373, 492
ErhI	CCWWGG	2 cut(s)	99, 574
FaeI	CATG	4 cut(s)	23, 271, 663, 809
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	4 cut(s)	19, 267, 659, 805
FauNDI	CATATG	1 cut(s)	757
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	3 cut(s)	76, 304, 455
FriOI	GRGCYC	2 cut(s)	373, 492
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	847
GlaI	GCGC	2 cut(s)	73, 519
GluI	GCNGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	521
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	3 cut(s)	115, 134, 685
HhaI	GCGC	2 cut(s)	74, 520
Hin1II	CATG	4 cut(s)	23, 271, 663, 809
Hin6I	GCGC	2 cut(s)	72, 518
HinP1I	GCGC	2 cut(s)	72, 518
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	3 cut(s)	115, 134, 685
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	2 cut(s)	734, 826
Hpy188I	TCNGA	6 cut(s)	83, 94, 381, 594, 618, 790
Hpy188III	TCNNGA	1 cut(s)	774
Hpy8I	GTNNAC	2 cut(s)	734, 826
HpyAV	CCTTC	4 cut(s)	359, 488, 637, 641
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	9 cut(s)	89, 552, 599, 671, 701, 743, 805, 809, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 392, 401, 815
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	23, 271, 663, 809
HspAI	GCGC	2 cut(s)	72, 518
Kzo9I	GATC	5 cut(s)	150, 196, 654, 790, 829
LmnI	GCTCC	6 cut(s)	69, 163, 368, 515, 525, 752
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	4 cut(s)	98, 282, 588, 612
MaeI	CTAG	1 cut(s)	847
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	508, 693
MalI	GATC	5 cut(s)	152, 198, 656, 792, 831
MboI	GATC	5 cut(s)	150, 196, 654, 790, 829
MboII	GAAGA	3 cut(s)	304, 344, 706
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	3 cut(s)	285, 373, 492
MluCI	AATT	2 cut(s)	321, 483
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	6 cut(s)	141, 445, 458, 617, 673, 831
Mph1103I	ATGCAT	1 cut(s)	91
MseI	TTAA	2 cut(s)	243, 566
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	3 cut(s)	115, 134, 685
MspR9I	CCNGG	5 cut(s)	30, 116, 135, 161, 686
Mva1269I	GAATGC	3 cut(s)	395, 599, 784
MvaI	CCWGG	2 cut(s)	30, 161
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	185, 392, 401, 815
NciI	CCSGG	3 cut(s)	116, 135, 686
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	5 cut(s)	150, 196, 654, 790, 829
NlaIII	CATG	4 cut(s)	23, 271, 663, 809
NlaIV	GGNNCC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	1 cut(s)	809
PaeI	GCATGC	1 cut(s)	809
PaeR7I	CTCGAG	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	447
PctI	GAATGC	3 cut(s)	395, 599, 784
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	373
Psp6I	CCWGG	2 cut(s)	28, 159
PspGI	CCWGG	2 cut(s)	28, 159
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	3 cut(s)	112, 614, 682
PspXI	VCTCGAGB	1 cut(s)	449
PsrI	GAACNNNNNNTAC	2 cut(s)	401, 433
PstI	CTGCAG	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	815
PsuI	RGATCY	1 cut(s)	790
RsaI	GTAC	3 cut(s)	158, 735, 813
RsaNI	GTAC	3 cut(s)	157, 734, 812
RseI	CAYNNNNRTG	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	243, 566
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	5 cut(s)	150, 196, 654, 790, 829
Sau96I	GGNCC	3 cut(s)	112, 614, 682
ScrFI	CCNGG	5 cut(s)	30, 116, 135, 161, 686
SduI	GDGCHC	3 cut(s)	285, 373, 492
SetI	ASST	8 cut(s)	38, 162, 168, 213, 373, 536, 684, 817
SfaNI	GCATC	4 cut(s)	98, 282, 588, 612
SfcI	CTRYAG	1 cut(s)	669
Sfr274I	CTCGAG	1 cut(s)	449
SinI	GGWCC	3 cut(s)	112, 614, 682
SlaI	CTCGAG	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	230, 449
SmoI	CTYRAG	2 cut(s)	230, 449
SphI	GCATGC	1 cut(s)	809
Sse9I	AATT	2 cut(s)	321, 483
SseBI	AGGCCT	1 cut(s)	447
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	1 cut(s)	847
SstI	GAGCTC	1 cut(s)	373
StuI	AGGCCT	1 cut(s)	447
StyD4I	CCNGG	5 cut(s)	28, 114, 133, 159, 684
StyI	CCWWGG	2 cut(s)	99, 574
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	207, 450
TasI	AATT	2 cut(s)	321, 483
TatI	WGTACW	1 cut(s)	733
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	243, 566
Tru9I	TTAA	2 cut(s)	243, 566
TseI	GCWGC	1 cut(s)	386
TspDTI	ATGAA	2 cut(s)	284, 754
VpaK11BI	GGWCC	3 cut(s)	112, 614, 682
XceI	RCATGY	1 cut(s)	809
XhoI	CTCGAG	1 cut(s)	449
XspI	CTAG	1 cut(s)	847
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.