Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008026

Physical Location & Seq

Genomic Coordinates Reverse (-)

39260888 .. 39266665

Gene Structure 5778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00246170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGGTTCTTTCAAGGGTCATGCTCTGCCAGGGACGTTGTTTCTTGTAGTTGGGTTGTGGCATATATGGAGCGCGTTGGTCAGATATGTATCCGACCCCAAGTCATTTCGGGTCCGGGTTTGGAATCCTGTGCCGGGTTTTGATGGGAGGATCAAGTACTTGGAGCTTTATGTTATCGCCGTTGGTGCTTTTATTGATCTGTGTATCGAGCTTTTGTATTCGCCCCATCTCGAGTTCTTTGTTAATGGAGTTTTGAACCCTGCTCACATGAATGATTTTGAGCACTCGGGGATGCTTCTTATGTTCTTTATCTTCAGTGTAATTGCTCTGCTCTCACAGGAGACAAGTCAAGTGCAGAGAGATACTCACTCTTCTCTATATGACCAACCAATTGAACGCTGGGGTAATTATGATTTTGACATGTCAGCCACCTGGCTTTTGGAGATAATGACTGCCTTGCTTGGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

156

Amino Acids

17.86

Weight (kDa)

5.35

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32127 AT1G32127
fragaria_vesca	FvH4_5g23820
malus_domestica	MD00G1000700.v1.1 MD06G1014200.v1.1
prunus_persica	Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1
pyrus_communis	pycom06g01120 pycom16g25410
rosa_chinensis	RchiOBHm_Chr7g0213211
rosa_laevigata	RLG00000002822
rosa_multiflora	Rmu_ssc0000084.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246170
rosa_rugosa	Rorug07G0140200 Rorug07G0140300
rosa_samantha	Rh7AG271900 Rh7BG267600 Rh7CG291200 Rh7DG280000
rosa_wichuraiana	Rw7G023600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	74
AclWI	GGATC	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	298
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	134, 462
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	3 cut(s)	13, 256, 395
AhdI	GACNNNNNGTC	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	28, 431
AluBI	AGCT	2 cut(s)	166, 211
AluI	AGCT	2 cut(s)	166, 211
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	158
Ama87I	CYCGRG	2 cut(s)	230, 286
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	2 cut(s)	116, 135
AvaI	CYCGRG	2 cut(s)	230, 286
AvaII	GGWCC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	285
BccI	CCATC	2 cut(s)	137, 234
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	2 cut(s)	30, 433
BciVI	GTATCC	1 cut(s)	100
BcnI	CCSGG	2 cut(s)	116, 135
BcoDI	GTCTC	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	4 cut(s)	30, 116, 135, 433
Bme18I	GGWCC	1 cut(s)	112
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmeT110I	CYCGRG	2 cut(s)	230, 286
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	4 cut(s)	30, 116, 135, 433
BmsI	GCATC	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BpuMI	CCSGG	2 cut(s)	116, 135
BsaBI	GATNNNNATC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 462
Bse8I	GATNNNNATC	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	30, 433
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	134, 462
BseYI	CCCAGC	1 cut(s)	399
BsgI	GTGCAG	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	2 cut(s)	230, 286
BsiSI	CCGG	2 cut(s)	115, 134
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	134, 462
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	46
BsoBI	CYCGRG	2 cut(s)	230, 286
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	150, 196
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	150, 196
Bst2UI	CCWGG	2 cut(s)	30, 433
Bst6I	CTCTTC	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	153, 199
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	2 cut(s)	150, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	2 cut(s)	30, 433
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	4 cut(s)	28, 114, 133, 431
BstUI	CGCG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	322
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	3 cut(s)	20, 268, 421
CviJI	RGCY	5 cut(s)	166, 211, 428, 436, 466
CviKI_1	RGCY	5 cut(s)	166, 211, 428, 436, 466
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	2 cut(s)	152, 198
DpnII	GATC	2 cut(s)	150, 196
DriI	GACNNNNNGTC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	376
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	298
Eco88I	CYCGRG	2 cut(s)	230, 286
EcoRII	CCWGG	2 cut(s)	28, 431
FaeI	CATG	3 cut(s)	23, 271, 424
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	3 cut(s)	19, 267, 420
FokI	GGATG	1 cut(s)	304
GlaI	GCGC	1 cut(s)	73
GsaI	CCCAGC	1 cut(s)	403
HapII	CCGG	2 cut(s)	115, 134
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	23, 271, 424
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	115, 134
Hpy188I	TCNGA	2 cut(s)	83, 94
Hpy188III	TCNNGA	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	23, 271, 424
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	150, 196
LmnI	GCTCC	2 cut(s)	69, 163
LweI	GCATC	1 cut(s)	282
MaeII	ACGT	1 cut(s)	35
MalI	GATC	2 cut(s)	152, 198
MboI	GATC	2 cut(s)	150, 196
MboII	GAAGA	2 cut(s)	304, 363
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	321, 390, 406
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	1 cut(s)	141
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	2 cut(s)	115, 134
MspR9I	CCNGG	4 cut(s)	30, 116, 135, 433
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	2 cut(s)	30, 433
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	2 cut(s)	116, 135
NdeII	GATC	2 cut(s)	150, 196
NlaIII	CATG	3 cut(s)	23, 271, 424
NlaIV	GGNNCC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	424
PaeR7I	CTCGAG	1 cut(s)	230
PciI	ACATGT	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	124
PscI	ACATGT	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	28, 431
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	2 cut(s)	28, 431
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	112
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	150, 196
Sau96I	GGNCC	1 cut(s)	112
ScaI	AGTACT	1 cut(s)	158
ScrFI	CCNGG	4 cut(s)	30, 116, 135, 433
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	4 cut(s)	38, 168, 213, 434
SfaNI	GCATC	1 cut(s)	282
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	3 cut(s)	321, 390, 406
StyD4I	CCNGG	4 cut(s)	28, 114, 133, 431
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	207, 231
TasI	AATT	3 cut(s)	321, 390, 406
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	112
XceI	RCATGY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	2 cut(s)	396, 436
XhoI	CTCGAG	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.