Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008026

Physical Location & Seq

Genomic Coordinates Forward (+)

1194254 .. 1196504

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGTTCTTTCAAAGGTCATATTCTGCCAGGGACTTTGTTTTTGGTTGTTGGGGTGTGGCACGTATGGTGCTCGCTGGTGAGATATGTGTCAAACCCCAAGTCCTTTCGGGTACATGTATGGAACCCAGTTCCCGGTGTTGATGGGAGGCTTAAGTATTTTGAGCTTTATCTTATAGCAGTTGGTGCTTTCATTGATATGTGTATCGAGCTTTTGTATTCGACCCATCTCAAGTTCTTTGTAGATGGAGTCTTGAACCCTCATCACATGAATGATTTCGAGCACTCGGGGATGCTTCTTATGTTCTTTATCTTTGGGGTTGTCACCCTGATCTCACAGGAGACAAGATTTCTTCCGATGCCTGAAGGAGCTCTTGCTCTGATTGCTGCTACAGCATTCTGTGCAGAGTATCTCCTTTTCTACTTTCACTCAACAACTCATAAAGGCCTCGAGGGGTATTACCACATCCTCCTTGTCCTCCTGATCGGGCTCTGCATATTATCAACTGTGGCTGGAGCCCTCTTACCAACCAGCTTTCCAATTGATTTATGTAGCGGTATTGCCATAACTCTCCAAGGCCTCTGGTTTTATCAGACTGCATTCACTCTCTACGGCCCCATGATGCCAGATGGTTGTCAGCTCAAGGATGATATGATCTCATGTCATTCTGTCGACAGTGAGGTCCGAGGTGAGTTGCTTGCAAACTTCCAGTTCTTTACCATGGTTCTTAGCTTGCTTGTTGCAGTTGTGGGAGGATATGGTTTTGTTGCCTCAAGATTTGGGCATTCTGATCAACGGAGCTTGCGTGCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

272

Amino Acids

30.23

Weight (kDa)

6.14

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32127 AT1G32127
fragaria_vesca	FvH4_5g23820
malus_domestica	MD00G1000700.v1.1 MD06G1014200.v1.1
prunus_persica	Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1 Prupe.5G022200_v2.0.a1
pyrus_communis	pycom06g01120 pycom16g25410
rosa_chinensis	RchiOBHm_Chr7g0213211
rosa_laevigata	RLG00000002822
rosa_multiflora	Rmu_ssc0000084.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246170
rosa_rugosa	Rorug07G0140200 Rorug07G0140300
rosa_samantha	Rh7AG271900 Rh7BG267600 Rh7CG291200 Rh7DG280000
rosa_wichuraiana	Rw7G023600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	680
AbsI	CCTCGAGG	1 cut(s)	449
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	1 cut(s)	555
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflII	CTTAAG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	13, 256
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	7 cut(s)	166, 211, 371, 534, 640, 732, 801
AluI	AGCT	7 cut(s)	166, 211, 371, 534, 640, 732, 801
Alw21I	GWGCWC	3 cut(s)	74, 285, 373
Alw26I	GTCTC	1 cut(s)	335
Ama87I	CYCGRG	2 cut(s)	286, 449
AoxI	GGCC	3 cut(s)	445, 577, 613
ApeKI	GCWGC	1 cut(s)	386
ArsI	GACNNNNNNTTYG	4 cut(s)	25, 57, 86, 118
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	614, 682
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	91, 316, 701
AvaI	CYCGRG	2 cut(s)	286, 449
AvaII	GGWCC	1 cut(s)	682
BanII	GRGCYC	3 cut(s)	373, 492, 520
Bbv12I	GWGCWC	3 cut(s)	74, 285, 373
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	4 cut(s)	137, 234, 239, 623
BceAI	ACGGC	1 cut(s)	628
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	790
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	390
BfrI	CTTAAG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	2 cut(s)	30, 135
Bme18I	GGWCC	1 cut(s)	682
BmeT110I	CYCGRG	2 cut(s)	286, 449
BmgT120I	GGNCC	2 cut(s)	614, 682
BmiI	GGNNCC	3 cut(s)	125, 517, 616
BmrFI	CCNGG	2 cut(s)	30, 135
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	3 cut(s)	282, 348, 612
BmuI	ACTGGG	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	534
BpuEI	CTTGAG	3 cut(s)	215, 626, 757
BpuMI	CCSGG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	64
BsaJI	CCNNGG	4 cut(s)	29, 574, 685, 720
BsaXI	ACNNNNNCTCC	1 cut(s)	790
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	128, 709
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	4 cut(s)	29, 574, 685, 720
BseGI	GGATG	3 cut(s)	297, 465, 652
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	128, 709
BseXI	GCAGC	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	3 cut(s)	447, 579, 615
BsiHKAI	GWGCWC	3 cut(s)	74, 285, 373
BsiHKCI	CYCGRG	2 cut(s)	286, 449
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	3 cut(s)	395, 599, 784
BsnI	GGCC	3 cut(s)	447, 579, 615
BsoBI	CYCGRG	2 cut(s)	286, 449
Bsp1286I	GDGCHC	5 cut(s)	74, 285, 373, 492, 520
Bsp143I	GATC	4 cut(s)	330, 483, 654, 790
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	1 cut(s)	555
BspANI	GGCC	3 cut(s)	447, 579, 615
BspLI	GGNNCC	3 cut(s)	125, 517, 616
BspTI	CTTAAG	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	128, 709
BssECI	CCNNGG	4 cut(s)	29, 574, 685, 720
BssMI	GATC	4 cut(s)	330, 483, 654, 790
BssT1I	CCWWGG	2 cut(s)	574, 720
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	508, 677
BstAFI	CTTAAG	1 cut(s)	152
BstAPI	GCANNNNNTGC	2 cut(s)	185, 401
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	5 cut(s)	74, 699, 734, 803, 807
BstDEI	CTNAG	1 cut(s)	728
BstDSI	CCRYGG	1 cut(s)	720
BstF5I	GGATG	3 cut(s)	297, 465, 652
BstKTI	GATC	4 cut(s)	333, 486, 657, 793
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	4 cut(s)	330, 483, 654, 790
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 383, 392, 401
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	28, 133
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	373
BsuRI	GGCC	3 cut(s)	447, 579, 615
BtgI	CCRYGG	1 cut(s)	720
BtsCI	GGATG	3 cut(s)	297, 465, 652
BtsIMutI	CAGTG	1 cut(s)	682
Cac8I	GCNNGC	5 cut(s)	74, 699, 734, 803, 807
Cfr13I	GGNCC	2 cut(s)	614, 682
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	5 cut(s)	116, 268, 619, 660, 721
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	1 cut(s)	728
DpnI	GATC	4 cut(s)	332, 485, 656, 792
DpnII	GATC	4 cut(s)	330, 483, 654, 790
DrdI	GACNNNNNNGTC	1 cut(s)	680
DseDI	GACNNNNNNGTC	1 cut(s)	680
Ecl136II	GAGCTC	1 cut(s)	371
Eco130I	CCWWGG	2 cut(s)	574, 720
Eco147I	AGGCCT	2 cut(s)	447, 579
Eco24I	GRGCYC	3 cut(s)	373, 492, 520
Eco47I	GGWCC	1 cut(s)	682
Eco53kI	GAGCTC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	384
Eco88I	CYCGRG	2 cut(s)	286, 449
EcoICRI	GAGCTC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	574, 720
EcoT38I	GRGCYC	3 cut(s)	373, 492, 520
ErhI	CCWWGG	2 cut(s)	574, 720
FaeI	CATG	5 cut(s)	119, 271, 622, 663, 724
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	5 cut(s)	115, 267, 618, 659, 720
FbaI	TGATCA	1 cut(s)	790
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	3 cut(s)	304, 452, 659
FriOI	GRGCYC	3 cut(s)	373, 492, 520
Fsp4HI	GCNGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	3 cut(s)	447, 579, 615
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	5 cut(s)	119, 271, 622, 663, 724
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	1 cut(s)	249
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	3 cut(s)	91, 316, 701
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	5 cut(s)	357, 381, 594, 686, 790
Hpy188III	TCNNGA	3 cut(s)	253, 481, 774
Hpy8I	GTNNAC	1 cut(s)	673
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	508, 677
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	6 cut(s)	404, 495, 599, 701, 743, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 383, 392, 401
HpyF3I	CTNAG	1 cut(s)	728
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	119, 271, 622, 663, 724
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	4 cut(s)	330, 483, 654, 790
LmnI	GCTCC	3 cut(s)	368, 515, 798
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	3 cut(s)	282, 348, 612
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	4 cut(s)	332, 485, 656, 792
MboI	GATC	4 cut(s)	330, 483, 654, 790
MboII	GAAGA	1 cut(s)	344
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	5 cut(s)	74, 285, 373, 492, 520
MluCI	AATT	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	2 cut(s)	197, 270
MspCI	CTTAAG	1 cut(s)	152
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	30, 135
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	3 cut(s)	395, 599, 784
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	4 cut(s)	185, 383, 392, 401
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	4 cut(s)	330, 483, 654, 790
NlaIII	CATG	5 cut(s)	119, 271, 622, 663, 724
NlaIV	GGNNCC	3 cut(s)	125, 517, 616
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	449
PceI	AGGCCT	2 cut(s)	447, 579
PciI	ACATGT	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	802
PctI	GAATGC	3 cut(s)	395, 599, 784
PdmI	GAANNNNTTC	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	64
PscI	ACATGT	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	125, 517, 616
PspPI	GGNCC	2 cut(s)	614, 682
PspXI	VCTCGAGB	1 cut(s)	449
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
RseI	CAYNNNNRTG	2 cut(s)	197, 270
SacI	GAGCTC	1 cut(s)	373
SalI	GTCGAC	1 cut(s)	671
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	4 cut(s)	330, 483, 654, 790
Sau96I	GGNCC	2 cut(s)	614, 682
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	2 cut(s)	30, 135
SduI	GDGCHC	5 cut(s)	74, 285, 373, 492, 520
SfaNI	GCATC	3 cut(s)	282, 348, 612
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	682
SlaI	CTCGAG	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	197, 270
SmlI	CTYRAG	5 cut(s)	152, 230, 449, 641, 772
SmoI	CTYRAG	5 cut(s)	152, 230, 449, 641, 772
Sse9I	AATT	1 cut(s)	540
SseBI	AGGCCT	2 cut(s)	447, 579
SsiI	CCGC	1 cut(s)	555
SstI	GAGCTC	1 cut(s)	373
StuI	AGGCCT	2 cut(s)	447, 579
StyD4I	CCNGG	2 cut(s)	28, 133
StyI	CCWWGG	2 cut(s)	574, 720
TaaI	ACNGT	2 cut(s)	508, 677
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	5 cut(s)	207, 221, 279, 450, 672
TasI	AATT	1 cut(s)	540
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	181, 284
TspGWI	ACGGA	1 cut(s)	811
TspRI	CASTG	1 cut(s)	682
Vha464I	CTTAAG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	682
XceI	RCATGY	1 cut(s)	119
XhoI	CTCGAG	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	672
XmnI	GAANNNNTTC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.