Rh7BG267600

Transmembrane protein 45B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008026
Physical Location & Seq
Forward (+)
24522999 .. 24528041
5043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG267600.1

Sequence Viewer

Length: 507 bp
ATGGGTTCTTTCAAGGGTCATGCTGTGCCAGGGACGTTGTTTCTTGTAGTTGGGTTGTGGCATATATGGAGCGCGTTGGTCAGATATGTATCCGACCCCAAGTCATTTCGGGTCCGGGTTTGGAATCCTGTGCCGGGTTTTGATGGGAGGATCAAGTACTTGGAGCTTTATGTTATAGCCGTTGGTGCTTTTATTGATCTGTGTATCGAGCTTTTGTATTCGCCCCATCTCAAGTTCTTTGTTAATGGAGTTTTGAACCCTGCTCACATGAATGATTTTGAGCACTCGGGGATGCTTCTTATGTTCTTTATCTTCGGTGTAATTGCTCTGCTCTCACAGGAGACAAGATTTCTTCCATTGCCTGAAGGAGCTCTTTGTCTGATTGCTGCCACGGCATTCTCTGCGGAGTATCTCTTGTTCTACTTTCACTCAACAACTCATAAAGGCCTCGAGGGGTATTACCACATCATCCTTTCAGCCAACATTGAACTACTCAAAAGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF716

Protein Analysis

168

Amino Acids

18.97

Weight (kDa)

6.69

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF716 PF04819 123 - 162 4.3e-10 Family of unknown function (DUF716)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 449
AccII CGCG 1 cut(s) 74
AciI CCGC 1 cut(s) 404
AclWI GGATC 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 3 cut(s) 13, 256, 488
AhdI GACNNNNNGTC 1 cut(s) 100
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 3 cut(s) 166, 211, 371
AluI AGCT 3 cut(s) 166, 211, 371
Alw21I GWGCWC 2 cut(s) 285, 373
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 1 cut(s) 158
Ama87I CYCGRG 2 cut(s) 286, 449
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 2 cut(s) 116, 135
AvaI CYCGRG 2 cut(s) 286, 449
AvaII GGWCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 373
Bbv12I GWGCWC 2 cut(s) 285, 373
BbvI GCAGC 1 cut(s) 373
BccI CCATC 2 cut(s) 137, 234
BceAI ACGGC 2 cut(s) 164, 408
BciT130I CCWGG 1 cut(s) 30
BciVI GTATCC 1 cut(s) 100
BcnI CCSGG 2 cut(s) 116, 135
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 1 cut(s) 505
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 3 cut(s) 30, 116, 135
Bme18I GGWCC 1 cut(s) 112
BmeRI GACNNNNNGTC 1 cut(s) 100
BmeT110I CYCGRG 2 cut(s) 286, 449
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 3 cut(s) 30, 116, 135
BmsI GCATC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 2 cut(s) 116, 135
BsaBI GATNNNNATC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 29, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 356
Bse8I GATNNNNATC 1 cut(s) 88
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 29, 390
BseGI GGATG 2 cut(s) 297, 468
BseJI GATNNNNATC 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 447
BsiHKAI GWGCWC 2 cut(s) 285, 373
BsiHKCI CYCGRG 2 cut(s) 286, 449
BsiSI CCGG 2 cut(s) 115, 134
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 395
BsnI GGCC 1 cut(s) 447
BsoBI CYCGRG 2 cut(s) 286, 449
Bsp1286I GDGCHC 2 cut(s) 285, 373
Bsp143I GATC 2 cut(s) 150, 196
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 447
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 113
BspPI GGATC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 29, 390
BssMI GATC 2 cut(s) 150, 196
Bst2UI CCWGG 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 401
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 297, 468
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 153, 199
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 2 cut(s) 150, 196
BstMWI GCNNNNNNNGC 3 cut(s) 185, 392, 401
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 3 cut(s) 28, 114, 133
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 373
BsuI GTATCC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 447
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 297, 468
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 157
CviAII CATG 2 cut(s) 20, 268
CviJI RGCY 6 cut(s) 166, 179, 211, 371, 447, 479
CviKI_1 RGCY 6 cut(s) 166, 179, 211, 371, 447, 479
CviQI GTAC 1 cut(s) 157
DpnI GATC 2 cut(s) 152, 198
DpnII GATC 2 cut(s) 150, 196
DriI GACNNNNNGTC 1 cut(s) 100
Eam1105I GACNNNNNGTC 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 371
Eco147I AGGCCT 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 384
Eco88I CYCGRG 2 cut(s) 286, 449
EcoICRI GAGCTC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 373
FaeI CATG 2 cut(s) 23, 271
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 1 cut(s) 46
FatI CATG 2 cut(s) 19, 267
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 2 cut(s) 304, 455
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 1 cut(s) 505
GlaI GCGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 447
HapII CCGG 2 cut(s) 115, 134
HhaI GCGC 1 cut(s) 74
Hin1II CATG 2 cut(s) 23, 271
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 1 cut(s) 124
HpaII CCGG 2 cut(s) 115, 134
Hpy188I TCNGA 3 cut(s) 83, 94, 381
HpyAV CCTTC 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 392, 401
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 2 cut(s) 23, 271
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 150, 196
LmnI GCTCC 3 cut(s) 69, 163, 368
LpnPI CCDG 8 cut(s) 15, 42, 128, 141, 147, 273, 323, 375
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 505
MaeII ACGT 1 cut(s) 35
MalI GATC 2 cut(s) 152, 198
MboI GATC 2 cut(s) 150, 196
MboII GAAGA 2 cut(s) 304, 344
MhlI GDGCHC 2 cut(s) 285, 373
MluCI AATT 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 3 cut(s) 141, 445, 458
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 2 cut(s) 115, 134
MspR9I CCNGG 3 cut(s) 30, 116, 135
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 185, 392, 401
NciI CCSGG 2 cut(s) 116, 135
NdeII GATC 2 cut(s) 150, 196
NlaIII CATG 2 cut(s) 23, 271
NlaIV GGNNCC 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 449
PceI AGGCCT 1 cut(s) 447
PctI GAATGC 1 cut(s) 395
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 388
Psp124BI GAGCTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 112
PspXI VCTCGAGB 1 cut(s) 449
PsrI GAACNNNNNNTAC 2 cut(s) 401, 433
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 270
SacI GAGCTC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 2 cut(s) 150, 196
Sau96I GGNCC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 158
ScrFI CCNGG 3 cut(s) 30, 116, 135
SduI GDGCHC 2 cut(s) 285, 373
SetI ASST 4 cut(s) 38, 168, 213, 373
SfaNI GCATC 1 cut(s) 282
Sfr274I CTCGAG 1 cut(s) 449
SinI GGWCC 1 cut(s) 112
SlaI CTCGAG 1 cut(s) 449
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 2 cut(s) 230, 449
SmoI CTYRAG 2 cut(s) 230, 449
Sse9I AATT 1 cut(s) 321
SseBI AGGCCT 1 cut(s) 447
SsiI CCGC 1 cut(s) 404
SspMI CTAG 1 cut(s) 505
SstI GAGCTC 1 cut(s) 373
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 3 cut(s) 28, 114, 133
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 207, 450
TasI AATT 1 cut(s) 321
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 449
XspI CTAG 1 cut(s) 505
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.