AT1G32580

plastid developmental protein DAG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011905
Physical Location & Seq
Forward (+)
11783543 .. 11785704
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32580.1

Sequence Viewer

Length: 690 bp
ATGGCGAAAACCCTAGCTCGCTCCACAGCGTCACGCATCACCAAGCGCTTAATCTCCACCTCCGGAGCCACCACTCCTTCCCCTTCTTATATCCTCTCCCGTCGATCAACCCCGGTGTTCTCCCATGCCGTCGGATTCATCTCTTCCTTGAATCGTTTCACAACGATTCGAACTCGAATGGATAGGTCCGGTGGATCGTACTCTCCTCTAAAATCCGGTTCGAATTTCAGCGACCGAGCACCCACTGAGATGGCGCCGTTGTTTCCTGGCTGCGATTATGAGCATTGGTTGATTGTAATGGACAAACCTGGAGGCGAAAACGCTACTAAGCAGCAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAGGTATTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAGGACTTCCTGGTGTTCTCTTCATTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGCTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCCTCCAGAGAGACAGAGAAAGATCATTGAGTTAACGACCCAGAGAACCAATGATAAACCAAAGTACCACGACAAGACCAGATATGTCCGAAGAAGAGAGAACATGCGTTGA

Protein Analysis

229

Amino Acids

26.02

Weight (kDa)

9.21

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 93 - 183 4.6e-42 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32580 AT2G35240
fragaria_vesca FvH4_7g07460
malus_domestica MD13G1218600.v1.1 MD16G1223900.v1.1
prunus_persica Prupe.1G045300_v2.0.a1
pyrus_communis pycom13g19350 pycom17g21670
rosa_chinensis RchiOBHm_Chr7g0223791
rosa_laevigata RLG00000001946
rosa_multiflora Rmu_sc0004540.1_g000007 Rmu_sc0010556.1_g000006
rosa_roxburghii Rroxscaffold_3G00235330
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363100 Rh7BG353900 Rh7CG381500 Rh7DG357900
rosa_wichuraiana Rw7G030820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 253
AccIII TCCGGA 1 cut(s) 62
AclWI GGATC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 2 cut(s) 200, 644
AfeI AGCGCT 1 cut(s) 47
AgsI TTSAA 4 cut(s) 151, 356, 476, 575
AjnI CCWGG 3 cut(s) 265, 307, 484
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AloI GAACNNNNNNTCC 2 cut(s) 555, 587
AluBI AGCT 5 cut(s) 17, 365, 392, 545, 550
AluI AGCT 5 cut(s) 17, 365, 392, 545, 550
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 2 cut(s) 452, 583
AlwI GGATC 1 cut(s) 202
Aor13HI TCCGGA 1 cut(s) 62
Aor51HI AGCGCT 1 cut(s) 47
ApeKI GCWGC 2 cut(s) 270, 331
ApoI RAATTY 1 cut(s) 223
Asp700I GAANNNNTTC 3 cut(s) 155, 480, 570
AspLEI GCGC 2 cut(s) 48, 256
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 31
AsuII TTCGAA 2 cut(s) 169, 221
AvaII GGWCC 1 cut(s) 186
BaeI ACNNNNGTAYC 2 cut(s) 626, 659
BanI GGYRCC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 257, 343
BccI CCATC 1 cut(s) 244
BceAI ACGGC 2 cut(s) 113, 241
BciT130I CCWGG 3 cut(s) 267, 309, 486
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 2 cut(s) 452, 583
BfaI CTAG 2 cut(s) 14, 362
BfoI RGCGCY 2 cut(s) 49, 257
BisI GCNGC 2 cut(s) 271, 332
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 2 cut(s) 272, 333
Bme1390I CCNGG 4 cut(s) 113, 267, 309, 486
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 67, 255
BmrFI CCNGG 4 cut(s) 113, 267, 309, 486
BmsI GCATC 1 cut(s) 45
BpmI CTGGAG 2 cut(s) 330, 567
Bpu1102I GCTNAGC 1 cut(s) 546
Bpu14I TTCGAA 2 cut(s) 169, 221
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 3 cut(s) 62, 188, 215
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
BseAI TCCGGA 1 cut(s) 62
BseBI CCWGG 3 cut(s) 267, 309, 486
BseDI CCNNGG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 237, 537
BseRI GAGGAG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 257, 343
Bsh1285I CGRYCG 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 253
BsiEI CGRYCG 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 4 cut(s) 63, 113, 189, 216
BsmAI GTCTC 2 cut(s) 452, 583
Bsp119I TTCGAA 2 cut(s) 169, 221
Bsp1286I GDGCHC 1 cut(s) 241
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 4 cut(s) 104, 194, 520, 600
Bsp1720I GCTNAGC 1 cut(s) 546
BspCNI CTCAG 2 cut(s) 238, 538
BspEI TCCGGA 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 67, 255
BspPI GGATC 1 cut(s) 202
BspT104I TTCGAA 2 cut(s) 169, 221
BspT107I GGYRCC 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 4 cut(s) 104, 194, 520, 600
BssNI GRCGYC 1 cut(s) 254
Bst2UI CCWGG 3 cut(s) 267, 309, 486
Bst6I CTCTTC 4 cut(s) 148, 450, 500, 667
BstACI GRCGYC 1 cut(s) 254
BstBI TTCGAA 2 cut(s) 169, 221
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 4 cut(s) 246, 327, 393, 546
BstH2I RGCGCY 2 cut(s) 49, 257
BstHHI GCGC 2 cut(s) 48, 256
BstKTI GATC 4 cut(s) 107, 197, 523, 603
BstMAI GTCTC 2 cut(s) 452, 583
BstMBI GATC 4 cut(s) 104, 194, 520, 600
BstMCI CGRYCG 1 cut(s) 235
BstNI CCWGG 3 cut(s) 267, 309, 486
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 4 cut(s) 111, 265, 307, 484
BstV1I GCAGC 2 cut(s) 257, 343
BstXI CCANNNNNNTGG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 243, 385
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 2 cut(s) 48, 256
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 18
Csp6I GTAC 2 cut(s) 199, 643
CviAII CATG 2 cut(s) 125, 682
CviJI RGCY 7 cut(s) 17, 68, 270, 365, 392, 545, 550
CviKI_1 RGCY 7 cut(s) 17, 68, 270, 365, 392, 545, 550
CviQI GTAC 2 cut(s) 199, 643
DdeI CTNAG 4 cut(s) 246, 327, 393, 546
DinI GGCGCC 1 cut(s) 255
DpnI GATC 4 cut(s) 106, 196, 522, 602
DpnII GATC 4 cut(s) 104, 194, 520, 600
Eam1104I CTCTTC 4 cut(s) 148, 450, 500, 667
EarI CTCTTC 4 cut(s) 148, 450, 500, 667
Eco47I GGWCC 1 cut(s) 186
Eco47III AGCGCT 1 cut(s) 47
EcoRII CCWGG 3 cut(s) 265, 307, 484
EgeI GGCGCC 1 cut(s) 255
EheI GGCGCC 1 cut(s) 255
FaeI CATG 2 cut(s) 128, 685
FaiI YATR 8 cut(s) 90, 126, 279, 351, 408, 516, 663, 683
FatI CATG 2 cut(s) 124, 681
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 2 cut(s) 271, 332
Fsp4HI GCNGC 2 cut(s) 271, 332
FspBI CTAG 2 cut(s) 14, 362
GlaI GCGC 2 cut(s) 47, 255
GluI GCNGC 2 cut(s) 271, 332
GsuI CTGGAG 2 cut(s) 330, 567
HaeII RGCGCY 2 cut(s) 49, 257
HapII CCGG 4 cut(s) 63, 113, 189, 216
HgaI GACGC 1 cut(s) 18
HhaI GCGC 2 cut(s) 48, 256
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 2 cut(s) 128, 685
Hin6I GCGC 2 cut(s) 46, 254
HinP1I GCGC 2 cut(s) 46, 254
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HinfI GANTC 4 cut(s) 135, 151, 166, 509
HpaI GTTAAC 1 cut(s) 612
HpaII CCGG 4 cut(s) 63, 113, 189, 216
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 612
Hpy188I TCNGA 2 cut(s) 134, 668
Hpy188III TCNNGA 3 cut(s) 63, 524, 584
Hpy8I GTNNAC 1 cut(s) 612
Hpy99I CGWCG 2 cut(s) 105, 134
HpyAV CCTTC 3 cut(s) 87, 93, 470
HpyCH4IV ACGT 1 cut(s) 577
HpyF3I CTNAG 4 cut(s) 246, 327, 393, 546
HpySE526I ACGT 1 cut(s) 577
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 2 cut(s) 128, 685
HspAI GCGC 2 cut(s) 46, 254
KasI GGCGCC 1 cut(s) 253
Kpn2I TCCGGA 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 612
Kzo9I GATC 4 cut(s) 104, 194, 520, 600
LmnI GCTCC 3 cut(s) 26, 65, 542
Lsp1109I GCAGC 2 cut(s) 257, 343
LweI GCATC 1 cut(s) 45
MaeI CTAG 2 cut(s) 14, 362
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 1 cut(s) 30
MalI GATC 4 cut(s) 106, 196, 522, 602
MboI GATC 4 cut(s) 104, 194, 520, 600
MboII GAAGA 8 cut(s) 135, 398, 409, 412, 467, 487, 681, 684
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 2 cut(s) 223, 369
Mly113I GGCGCC 1 cut(s) 254
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 6 cut(s) 70, 104, 216, 305, 376, 591
MroI TCCGGA 1 cut(s) 62
MroXI GAANNNNTTC 3 cut(s) 155, 480, 570
MseI TTAA 2 cut(s) 50, 611
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 4 cut(s) 63, 113, 189, 216
MspR9I CCNGG 4 cut(s) 113, 267, 309, 486
MvaI CCWGG 3 cut(s) 267, 309, 486
NarI GGCGCC 1 cut(s) 254
NciI CCSGG 1 cut(s) 113
NdeII GATC 4 cut(s) 104, 194, 520, 600
NlaIII CATG 2 cut(s) 128, 685
NlaIV GGNNCC 2 cut(s) 67, 255
NmuCI GTSAC 1 cut(s) 30
NspI RCATGY 1 cut(s) 685
NspV TTCGAA 2 cut(s) 169, 221
PdmI GAANNNNTTC 3 cut(s) 155, 480, 570
PfeI GAWTC 3 cut(s) 135, 151, 166
PkrI GCNGC 2 cut(s) 272, 333
PleI GAGTC 1 cut(s) 503
PluTI GGCGCC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 503
PsiI TTATAA 1 cut(s) 408
Psp6I CCWGG 3 cut(s) 265, 307, 484
PspGI CCWGG 3 cut(s) 265, 307, 484
PspN4I GGNNCC 2 cut(s) 67, 255
PspPI GGNCC 1 cut(s) 186
PsrI GAACNNNNNNTAC 2 cut(s) 521, 553
RsaI GTAC 2 cut(s) 200, 644
RsaNI GTAC 2 cut(s) 199, 643
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 2 cut(s) 50, 611
SatI GCNGC 2 cut(s) 271, 332
Sau3AI GATC 4 cut(s) 104, 194, 520, 600
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 4 cut(s) 113, 267, 309, 486
SduI GDGCHC 1 cut(s) 241
SfaNI GCATC 1 cut(s) 45
SfoI GGCGCC 1 cut(s) 255
SfuI TTCGAA 2 cut(s) 169, 221
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 2 cut(s) 223, 369
SspDI GGCGCC 1 cut(s) 253
SspMI CTAG 2 cut(s) 14, 362
StyD4I CCNGG 4 cut(s) 111, 265, 307, 484
TaiI ACGT 1 cut(s) 580
TaqI TCGA 4 cut(s) 103, 169, 175, 221
TaqII GACCGA 1 cut(s) 249
TasI AATT 2 cut(s) 223, 369
TfiI GAWTC 3 cut(s) 135, 151, 166
Tru1I TTAA 2 cut(s) 50, 611
Tru9I TTAA 2 cut(s) 50, 611
TscAI CASTG 2 cut(s) 250, 385
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 2 cut(s) 270, 331
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 3 cut(s) 127, 468, 487
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 2 cut(s) 250, 385
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 223
XceI RCATGY 1 cut(s) 685
XmnI GAANNNNTTC 3 cut(s) 155, 480, 570
XspI CTAG 2 cut(s) 14, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.